RLG00000012897

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017703
Physical Location & Seq
Forward (+)
23594181 .. 23595625
1445 bp
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UTR
Exon/CDS
Intron
RLM00000012897

Sequence Viewer

Length: 573 bp
ATGATCGACGCGAATGTGAAGAATGGCGATAATGAGCGTGGCTCAATGCTTTTTCAGAATATGGTGATTGAGGAAGGTATAAAGCCATTTGCGATGCATTTCTGTAGGCAACTTCTCCTAGTCGTCGGCTCTCCGAAAACTCGCCAAAAACATCAACATAAGCAATATCCCATCTCCCAAGGCATGATGGATTTAAAAAATCCCAATGTTGTGAGCAATCAAGAGACAAAACTCCCATATGGGTTTGTCGATAGAGAGCCCCAAGCCAGTGGAGAGGTTGGCCAAGTAGTTATTGACGGTGGTCTCATTGTCAACGCCAGAGGAGACAGGGTCGTGAAGGATGATGACGTGGCGGTAGGCATTGATTTGGGTGGTTTTGTACCAGCGTTCTCGGCCGTGGGAGTCACGCACCATGAGGCTAGAGAATCTTGGGTGGGTGAGCATAGGGAGGACTTGACCCGGGATTTGATGAAGTATGTCTATTGGGTTTTTGAAGCCGATGACACAGTGGATTATTTGGTTCATTTAGCGTTGCAAGAAGAGATAGCCGGCCGGGGTCACGGGTTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.2

Weight (kDa)

5.3

Isoelectric Point (pI)

23.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017703)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47191
pyrus_communis pycom12g23590
rosa_laevigata RLG00000000403 RLG00000012895 RLG00000012897
rosa_multiflora Rmu_co8119870.1_g000001 Rmu_sc0008044.1_g000011
rosa_samantha Rh3BG010400 Rh3CG010100 Rh3DG010800 Rh7AG391900 Rh7CG410800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 353
AcoI YGGCCR 3 cut(s) 280, 393, 550
AfaI GTAC 1 cut(s) 381
AgsI TTSAA 1 cut(s) 494
AjiI CACGTC 1 cut(s) 349
Alw26I GTCTC 3 cut(s) 218, 308, 318
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 3 cut(s) 280, 393, 550
ArsI GACNNNNNNTTYG 2 cut(s) 448, 480
AsuC2I CCSGG 3 cut(s) 460, 461, 554
AsuHPI GGTGA 2 cut(s) 76, 449
AvaI CYCGRG 1 cut(s) 459
BalI TGGCCA 1 cut(s) 282
BanII GRGCYC 1 cut(s) 261
BccI CCATC 2 cut(s) 179, 181
BceAI ACGGC 1 cut(s) 380
BcnI CCSGG 3 cut(s) 460, 461, 554
BcoDI GTCTC 3 cut(s) 218, 308, 318
BfaI CTAG 2 cut(s) 119, 420
BfmI CTRYAG 1 cut(s) 103
Bme1390I CCNGG 3 cut(s) 460, 461, 554
BmeT110I CYCGRG 1 cut(s) 459
BmgBI CACGTC 1 cut(s) 349
BmrFI CCNGG 3 cut(s) 460, 461, 554
BmsI GCATC 1 cut(s) 84
BoxI GACNNNNGTC 1 cut(s) 300
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpuMI CCSGG 3 cut(s) 460, 461, 554
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 4 cut(s) 178, 396, 459, 553
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bse118I RCCGGY 1 cut(s) 548
Bse1I ACTGG 1 cut(s) 267
BseDI CCNNGG 4 cut(s) 178, 396, 459, 553
BseGI GGATG 1 cut(s) 346
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 336
BseX3I CGGCCG 2 cut(s) 393, 550
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 2 cut(s) 396, 553
BshFI GGCC 3 cut(s) 282, 395, 552
BsiEI CGRYCG 2 cut(s) 396, 553
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 3 cut(s) 460, 549, 553
BsmAI GTCTC 3 cut(s) 218, 308, 318
BsnI GGCC 3 cut(s) 282, 395, 552
Bso31I GGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 353
BspANI GGCC 3 cut(s) 282, 395, 552
BspFNI CGCG 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 548
BsrI ACTGG 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 548
BssECI CCNNGG 4 cut(s) 178, 396, 459, 553
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 299, 508
Bst6I CTCTTC 1 cut(s) 534
BstC8I GCNNGC 1 cut(s) 550
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 3 cut(s) 218, 308, 318
BstMBI GATC 1 cut(s) 3
BstMCI CGRYCG 2 cut(s) 396, 553
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstPAI GACNNNNGTC 1 cut(s) 300
BstSCI CCNGG 3 cut(s) 458, 459, 552
BstSFI CTRYAG 1 cut(s) 103
BstUI CGCG 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 269
BstZI CGGCCG 2 cut(s) 393, 550
BsuRI GGCC 3 cut(s) 282, 395, 552
BtgI CCRYGG 1 cut(s) 396
BtgZI GCGATG 1 cut(s) 107
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 274, 513
Cac8I GCNNGC 1 cut(s) 550
Cfr10I RCCGGY 1 cut(s) 548
Cfr9I CCCGGG 1 cut(s) 459
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 380
CviAII CATG 2 cut(s) 184, 413
CviQI GTAC 1 cut(s) 380
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraI TTTAAA 1 cut(s) 195
EaeI YGGCCR 3 cut(s) 280, 393, 550
EagI CGGCCG 2 cut(s) 393, 550
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
EclXI CGGCCG 2 cut(s) 393, 550
Eco130I CCWWGG 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 308
Eco52I CGGCCG 2 cut(s) 393, 550
Eco88I CYCGRG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 2 cut(s) 187, 416
FaiI YATR 9 cut(s) 62, 80, 159, 185, 238, 240, 414, 444, 477
FatI CATG 2 cut(s) 183, 412
FauNDI CATATG 1 cut(s) 238
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 261
FspBI CTAG 2 cut(s) 119, 420
HaeIII GGCC 3 cut(s) 282, 395, 552
HapII CCGG 3 cut(s) 460, 549, 553
HgaI GACGC 1 cut(s) 17
Hin1II CATG 2 cut(s) 187, 416
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 402, 425
HpaII CCGG 3 cut(s) 460, 549, 553
HphI GGTGA 2 cut(s) 76, 449
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 57, 135
Hpy188III TCNNGA 2 cut(s) 221, 334
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 2 cut(s) 11, 128
HpyAV CCTTC 2 cut(s) 68, 331
HpyCH4III ACNGT 2 cut(s) 299, 508
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 97, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 2 cut(s) 187, 416
KroI GCCGGC 1 cut(s) 548
KroNI GCCGGC 1 cut(s) 550
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 7 cut(s) 280, 313, 331, 396, 473, 562, 566
LweI GCATC 1 cut(s) 84
MaeI CTAG 2 cut(s) 119, 420
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 403, 557
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 31, 551
MhlI GDGCHC 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 282
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 1 cut(s) 411
MnlI CCTC 5 cut(s) 64, 268, 314, 409, 442
Mox20I TGGCCA 1 cut(s) 282
Mph1103I ATGCAT 1 cut(s) 99
MroNI GCCGGC 1 cut(s) 548
MscI TGGCCA 1 cut(s) 282
MseI TTAA 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 282
MspI CCGG 3 cut(s) 460, 549, 553
MspR9I CCNGG 3 cut(s) 460, 461, 554
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 392
NaeI GCCGGC 1 cut(s) 550
NciI CCSGG 3 cut(s) 460, 461, 554
NdeI CATATG 1 cut(s) 238
NdeII GATC 1 cut(s) 3
NgoMIV GCCGGC 1 cut(s) 548
NlaIII CATG 2 cut(s) 187, 416
NmeAIII GCCGAG 1 cut(s) 371
NmuCI GTSAC 2 cut(s) 403, 557
NsiI ATGCAT 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 550
PfeI GAWTC 1 cut(s) 425
PflFI GACNNNGTC 1 cut(s) 329
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
PshAI GACNNNNGTC 1 cut(s) 300
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
SaqAI TTAA 1 cut(s) 194
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 3 cut(s) 460, 461, 554
SduI GDGCHC 1 cut(s) 261
SetI ASST 3 cut(s) 79, 279, 351
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 103
SmaI CCCGGG 1 cut(s) 461
SsiI CCGC 1 cut(s) 353
SspMI CTAG 2 cut(s) 119, 420
StyD4I CCNGG 3 cut(s) 458, 459, 552
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 299, 508
TaiI ACGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 6, 249
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 2 cut(s) 274, 513
TseFI GTSAC 2 cut(s) 403, 557
Tsp45I GTSAC 2 cut(s) 403, 557
TspDTI ATGAA 2 cut(s) 485, 512
TspMI CCCGGG 1 cut(s) 459
TspRI CASTG 2 cut(s) 274, 513
Tth111I GACNNNGTC 1 cut(s) 329
XmaI CCCGGG 1 cut(s) 459
XspI CTAG 2 cut(s) 119, 420
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.