Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0017703

Physical Location & Seq

Genomic Coordinates Forward (+)

51292384 .. 51297062

Gene Structure 4679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG391900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCAGAACAGGAAGAGATTGCTCAGGATGAGTGTCTGGGTAACAAAGCCGAGAAGGGTGTAGTCAAGAAACGGCGTCATACCAACACAGAGGAAGGTGTGTATCAGTCTAAGACGAGGGAGACACAGGCGGCGTATGAGGATTTGCTTGGTGAGATTCAGCAACAGATGGATGGTCAGCAGCCGAGTATAATCGGTGGAGCGGCGGATGAGATTTTGGTTGTGATTAAGAATGAGAAGTTGAAGAATTCAGAGAAGAAATTGGAGATTGAAAAGCTTTTGCACCCTATACCAGATTCAGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

102

Amino Acids

11.49

Weight (kDa)

4.95

Isoelectric Point (pI)

68.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRR2_plug	PF21188	42 - 100	5.9e-08	Pre-mRNA-splicing helicase BRR2 plug domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47191
pyrus_communis	pycom12g23590
rosa_laevigata	RLG00000000403 RLG00000012895 RLG00000012897
rosa_multiflora	Rmu_co8119870.1_g000001 Rmu_sc0008044.1_g000011
rosa_samantha	Rh3BG010400 Rh3CG010100 Rh3DG010800 Rh7AG391900 Rh7CG410800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	203
AciI	CCGC	3 cut(s)	131, 203, 206
AcsI	RAATTY	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	244, 272
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	163, 167
BceAI	ACGGC	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	132, 182, 204
BlsI	GCNGC	3 cut(s)	133, 183, 205
Bpu10I	CCTNAGC	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	76
BseGI	GGATG	3 cut(s)	34, 178, 214
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	116
BspACI	CCGC	3 cut(s)	131, 203, 206
BspCNI	CTCAG	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	203
BssNI	GRCGYC	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	24, 111
BstF5I	GGATG	3 cut(s)	34, 178, 214
BstMAI	GTCTC	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	34, 178, 214
BtsIMutI	CAGTG	1 cut(s)	306
CseI	GACGC	1 cut(s)	65
CviJI	RGCY	3 cut(s)	50, 184, 277
CviKI_1	RGCY	3 cut(s)	50, 184, 277
DdeI	CTNAG	2 cut(s)	24, 111
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	247
FaiI	YATR	4 cut(s)	81, 138, 191, 290
Fnu4HI	GCNGC	3 cut(s)	132, 182, 204
FokI	GGATG	3 cut(s)	41, 185, 221
Fsp4HI	GCNGC	3 cut(s)	132, 182, 204
GluI	GCNGC	3 cut(s)	132, 182, 204
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	157, 296
HphI	GGTGA	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	7, 253
Hpy188III	TCNNGA	2 cut(s)	26, 67
HpyAV	CCTTC	2 cut(s)	49, 89
HpyCH4V	TGCA	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	24, 111
Hsp92I	GRCGYC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	3 cut(s)	11, 23, 113
Lsp1109I	GCAGC	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	41
MbiI	CCGCTC	1 cut(s)	203
MboII	GAAGA	3 cut(s)	26, 256, 268
MluCI	AATT	2 cut(s)	247, 260
MnlI	CCTC	3 cut(s)	85, 111, 133
MseI	TTAA	1 cut(s)	228
NmeAIII	GCCGAG	2 cut(s)	76, 210
PfeI	GAWTC	2 cut(s)	157, 296
PkrI	GCNGC	3 cut(s)	133, 183, 205
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	132, 182, 204
SetI	ASST	2 cut(s)	100, 279
Sse9I	AATT	2 cut(s)	247, 260
SsiI	CCGC	3 cut(s)	131, 203, 206
TasI	AATT	2 cut(s)	247, 260
TauI	GCSGC	2 cut(s)	134, 206
TfiI	GAWTC	2 cut(s)	157, 296
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	306
TseI	GCWGC	1 cut(s)	181
TspRI	CASTG	1 cut(s)	306
XapI	RAATTY	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.