Rh3BG010400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0017703
Physical Location & Seq
Reverse (-)
662356 .. 662607
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG010400.1

Sequence Viewer

Length: 252 bp
ATGAGGCTAGAGAATCTTGGGTGGGTGAGCATGACGGAGGACTTGACCTGGGATTTGATGGAGTCAGTGTCTATTAGGTTTTTTGAAGCCGATGACGCAGTGGATTATTTGGTTCATTTGGGGCTGCAGGAAGAGACTGCCGGCCGGGGTCACGCCATCACAGGCTCGTCAGAGTTGGTTGTTGCAGCTATCGCCGATGAACCCATACTGGATTCTCTATTGGCAACGATGAGCACGGGGTGTGCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.04

Weight (kDa)

4.1

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017703)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47191
pyrus_communis pycom12g23590
rosa_laevigata RLG00000000403 RLG00000012895 RLG00000012897
rosa_multiflora Rmu_co8119870.1_g000001 Rmu_sc0008044.1_g000011
rosa_samantha Rh3BG010400 Rh3CG010100 Rh3DG010800 Rh7AG391900 Rh7CG410800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 142
AdeI CACNNNGTG 1 cut(s) 240
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw21I GWGCWC 2 cut(s) 236, 247
Alw26I GTCTC 1 cut(s) 128
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 124, 185
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 37
Bbv12I GWGCWC 2 cut(s) 236, 247
BbvI GCAGC 2 cut(s) 111, 197
BccI CCATC 2 cut(s) 52, 164
BciT130I CCWGG 1 cut(s) 49
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 125
BisI GCNGC 2 cut(s) 125, 186
BlsI GCNGC 2 cut(s) 126, 187
Bme1390I CCNGG 2 cut(s) 49, 146
BmrFI CCNGG 2 cut(s) 49, 146
BpuMI CCSGG 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 48, 145
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 48, 145
BseNI ACTGG 1 cut(s) 213
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 111, 197
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 2 cut(s) 236, 247
BsiSI CCGG 2 cut(s) 141, 145
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 236, 247
BspANI GGCC 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 48, 145
Bst2UI CCWGG 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 128
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 95, 191
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 47, 144
BstSFI CTRYAG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 111, 197
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 72, 105
Cac8I GCNNGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 140
CseI GACGC 1 cut(s) 104
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 7, 89, 124, 144, 165, 188
CviKI_1 RGCY 6 cut(s) 7, 89, 124, 144, 165, 188
DraIII CACNNNGTG 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
EclXI CGGCCG 1 cut(s) 142
Eco52I CGGCCG 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 47
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 32, 206
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 125, 186
Fsp4HI GCNGC 2 cut(s) 125, 186
FspBI CTAG 1 cut(s) 8
GluI GCNGC 2 cut(s) 125, 186
HaeIII GGCC 1 cut(s) 144
HapII CCGG 2 cut(s) 141, 145
HgaI GACGC 1 cut(s) 104
Hin1II CATG 1 cut(s) 34
HinfI GANTC 3 cut(s) 13, 62, 212
HpaII CCGG 2 cut(s) 141, 145
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 127, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 191
Hsp92II CATG 1 cut(s) 34
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
LpnPI CCDG 7 cut(s) 34, 61, 113, 147, 154, 158, 194
Lsp1109I GCAGC 2 cut(s) 111, 197
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 149
MboII GAAGA 1 cut(s) 143
MhlI GDGCHC 2 cut(s) 236, 247
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 140
MspI CCGG 2 cut(s) 141, 145
MspR9I CCNGG 2 cut(s) 49, 146
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 95, 191
NaeI GCCGGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 146
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 2 cut(s) 13, 212
PkrI GCNGC 2 cut(s) 126, 187
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PstI CTGCAG 1 cut(s) 129
SatI GCNGC 2 cut(s) 125, 186
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 49, 146
SduI GDGCHC 2 cut(s) 236, 247
SetI ASST 3 cut(s) 50, 80, 190
SfcI CTRYAG 1 cut(s) 125
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 47, 144
TfiI GAWTC 2 cut(s) 13, 212
TscAI CASTG 2 cut(s) 72, 105
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 2 cut(s) 124, 185
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 104, 213
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 72, 105
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.