Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8119870.1

Orthogroup ID

OG0017703

Physical Location & Seq

Genomic Coordinates Forward (+)

68 .. 619

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8119870.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggcgggaggtggtggagcggaagcttacgcgcgaaacaaccaataccagctgcgatcgaattccagtctggtcctcctggcgtcctccgaccctcgctcacgtgagggtcacgtgcccagcggcgaggctgagtctctccgcggcagaatcgaccccaaaagcttcggtgatagggttcgcaggggaaggccgaagaggcaccgccgcgacccgagtcccccggaaccttttgcttccagcaaacggcgccgtatttgggaagagagcgtgctcactgcgacggaggaagacggcgtcgtttacaggccgaagacgaaggagacccgggctgcgtacgaggcgttgcttcacgtgattcggcagctgttgggtgaccagccggcgagtgtggtgtacggcgccgccgacgaggttctggcggtgattaaaggtaagaggtttgataagagaaaagagattgagaatttgttgaattcagtcggtgataatgtatttgatcagattgttcagattgggaagctgatcaccgattacggtgatgacgacgac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

184

Amino Acids

20.5

Weight (kDa)

8.83

Isoelectric Point (pI)

62.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47191
pyrus_communis	pycom12g23590
rosa_laevigata	RLG00000000403 RLG00000012895 RLG00000012897
rosa_multiflora	Rmu_co8119870.1_g000001 Rmu_sc0008044.1_g000011
rosa_samantha	Rh3BG010400 Rh3CG010100 Rh3DG010800 Rh7AG391900 Rh7CG410800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	201, 249, 401
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	4 cut(s)	32, 34, 144, 210
AciI	CCGC	9 cut(s)	5, 20, 123, 142, 144, 205, 208, 405, 422
AcsI	RAATTY	3 cut(s)	61, 466, 475
AcvI	CACGTG	3 cut(s)	104, 115, 355
AcyI	GRCGYC	4 cut(s)	83, 250, 297, 402
AfaI	GTAC	2 cut(s)	338, 398
AfiI	CCNNNNNNNGG	2 cut(s)	246, 259
AgsI	TTSAA	1 cut(s)	475
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	5 cut(s)	26, 52, 165, 367, 523
AluI	AGCT	5 cut(s)	26, 52, 165, 367, 523
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	2 cut(s)	141, 317
Ama87I	CYCGRG	2 cut(s)	214, 327
AoxI	GGCC	2 cut(s)	191, 308
ApeKI	GCWGC	3 cut(s)	52, 332, 364
ApoI	RAATTY	3 cut(s)	61, 466, 475
AspLEI	GCGC	3 cut(s)	34, 252, 404
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	3 cut(s)	224, 328, 329
AsuHPI	GGTGA	6 cut(s)	182, 386, 436, 497, 520, 551
AvaI	CYCGRG	2 cut(s)	214, 327
AvaII	GGWCC	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	120
BanI	GGYRCC	3 cut(s)	201, 249, 401
BbrPI	CACGTG	3 cut(s)	104, 115, 355
BbsI	GAAGAC	2 cut(s)	297, 320
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	39, 319, 376
BceAI	ACGGC	4 cut(s)	237, 263, 310, 415
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	2 cut(s)	499, 525
BcnI	CCSGG	3 cut(s)	224, 328, 329
BcoDI	GTCTC	2 cut(s)	141, 317
BfoI	RGCGCY	2 cut(s)	253, 405
BglI	GCCNNNNNGGC	1 cut(s)	199
BisI	GCNGC	7 cut(s)	53, 124, 145, 208, 333, 365, 405
BlsI	GCNGC	7 cut(s)	54, 125, 146, 209, 334, 366, 406
Bme1390I	CCNGG	4 cut(s)	80, 224, 328, 329
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	2 cut(s)	214, 327
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	4 cut(s)	203, 228, 251, 403
BmrFI	CCNGG	4 cut(s)	80, 224, 328, 329
BoxI	GACNNNNGTC	1 cut(s)	216
BpiI	GAAGAC	2 cut(s)	297, 320
BpuMI	CCSGG	3 cut(s)	224, 328, 329
BsaAI	YACGTR	3 cut(s)	104, 115, 355
BsaHI	GRCGYC	4 cut(s)	83, 250, 297, 402
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	142, 222, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 259
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	142, 222, 327
BseLI	CCNNNNNNNGG	2 cut(s)	246, 259
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	39, 319, 376
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	4 cut(s)	32, 34, 144, 210
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	193, 310
BshNI	GGYRCC	3 cut(s)	201, 249, 401
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	2 cut(s)	214, 327
BsiSI	CCGG	3 cut(s)	224, 328, 383
BsiWI	CGTACG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	246, 259
BsmAI	GTCTC	2 cut(s)	141, 317
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	193, 310
Bso31I	GGTCTC	1 cut(s)	317
BsoBI	CYCGRG	2 cut(s)	214, 327
Bsp1286I	GDGCHC	2 cut(s)	120, 276
Bsp143I	GATC	3 cut(s)	56, 499, 525
BspACI	CCGC	9 cut(s)	5, 20, 123, 142, 144, 205, 208, 405, 422
BspANI	GGCC	2 cut(s)	193, 310
BspCNI	CTCAG	1 cut(s)	124
BspFNI	CGCG	4 cut(s)	32, 34, 144, 210
BspLI	GGNNCC	4 cut(s)	203, 228, 251, 403
BspT107I	GGYRCC	3 cut(s)	201, 249, 401
BspTNI	GGTCTC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	3 cut(s)	142, 222, 327
BssMI	GATC	3 cut(s)	56, 499, 525
BssNI	GRCGYC	4 cut(s)	83, 250, 297, 402
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	539
Bst6I	CTCTTC	2 cut(s)	191, 258
BstACI	GRCGYC	4 cut(s)	83, 250, 297, 402
BstBAI	YACGTR	3 cut(s)	104, 115, 355
BstC8I	GCNNGC	2 cut(s)	272, 384
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	142
BstEII	GGTNACC	1 cut(s)	374
BstFNI	CGCG	4 cut(s)	32, 34, 144, 210
BstH2I	RGCGCY	2 cut(s)	253, 405
BstHHI	GCGC	3 cut(s)	34, 252, 404
BstKTI	GATC	3 cut(s)	59, 502, 528
BstMAI	GTCTC	2 cut(s)	141, 317
BstMBI	GATC	3 cut(s)	56, 499, 525
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 249, 341
BstNI	CCWGG	1 cut(s)	80
BstPAI	GACNNNNGTC	1 cut(s)	216
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	4 cut(s)	78, 222, 326, 327
BstSLI	GKGCMC	1 cut(s)	120
BstUI	CGCG	4 cut(s)	32, 34, 144, 210
BstV1I	GCAGC	3 cut(s)	39, 319, 376
BstV2I	GAAGAC	2 cut(s)	297, 320
BsuRI	GGCC	2 cut(s)	193, 310
BtgI	CCRYGG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	2 cut(s)	272, 384
CfoI	GCGC	3 cut(s)	34, 252, 404
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	73
Cfr42I	CCGCGG	1 cut(s)	145
Cfr9I	CCCGGG	1 cut(s)	327
CseI	GACGC	2 cut(s)	72, 286
Csp6I	GTAC	2 cut(s)	337, 397
CviQI	GTAC	2 cut(s)	337, 397
DdeI	CTNAG	1 cut(s)	132
DinI	GGCGCC	2 cut(s)	251, 403
DpnI	GATC	3 cut(s)	58, 501, 527
DpnII	GATC	3 cut(s)	56, 499, 525
Eam1104I	CTCTTC	2 cut(s)	191, 258
EarI	CTCTTC	2 cut(s)	191, 258
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	73
Eco72I	CACGTG	3 cut(s)	104, 115, 355
Eco88I	CYCGRG	2 cut(s)	214, 327
Eco91I	GGTNACC	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	374
EcoRI	GAATTC	2 cut(s)	61, 475
EcoRII	CCWGG	1 cut(s)	78
EgeI	GGCGCC	2 cut(s)	251, 403
EheI	GGCGCC	2 cut(s)	251, 403
FaqI	GGGAC	1 cut(s)	204
FbaI	TGATCA	2 cut(s)	499, 525
Fnu4HI	GCNGC	7 cut(s)	53, 124, 145, 208, 333, 365, 405
Fsp4HI	GCNGC	7 cut(s)	53, 124, 145, 208, 333, 365, 405
GlaI	GCGC	3 cut(s)	33, 251, 403
GluI	GCNGC	7 cut(s)	53, 124, 145, 208, 333, 365, 405
GsaI	CCCAGC	1 cut(s)	123
HaeII	RGCGCY	2 cut(s)	253, 405
HaeIII	GGCC	2 cut(s)	193, 310
HapII	CCGG	3 cut(s)	224, 328, 383
HgaI	GACGC	2 cut(s)	72, 286
HhaI	GCGC	3 cut(s)	34, 252, 404
Hin1I	GRCGYC	4 cut(s)	83, 250, 297, 402
Hin6I	GCGC	3 cut(s)	32, 250, 402
HinP1I	GCGC	3 cut(s)	32, 250, 402
HindIII	AAGCTT	2 cut(s)	24, 163
HinfI	GANTC	4 cut(s)	134, 150, 217, 358
HpaII	CCGG	3 cut(s)	224, 328, 383
HphI	GGTGA	6 cut(s)	182, 386, 436, 497, 520, 551
Hpy166II	GTNNAC	2 cut(s)	304, 397
Hpy188I	TCNGA	3 cut(s)	91, 504, 513
Hpy8I	GTNNAC	2 cut(s)	304, 397
Hpy99I	CGWCG	4 cut(s)	286, 302, 413, 551
HpyAV	CCTTC	2 cut(s)	183, 313
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	3 cut(s)	103, 114, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 249, 341
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	3 cut(s)	103, 114, 354
Hsp92I	GRCGYC	4 cut(s)	83, 250, 297, 402
HspAI	GCGC	3 cut(s)	32, 250, 402
KasI	GGCGCC	2 cut(s)	249, 401
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
Ksp22I	TGATCA	2 cut(s)	499, 525
KspI	CCGCGG	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	56, 499, 525
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	3 cut(s)	39, 319, 376
MaeII	ACGT	3 cut(s)	103, 114, 354
MaeIII	GTNAC	2 cut(s)	110, 374
MalI	GATC	3 cut(s)	58, 501, 527
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	3 cut(s)	56, 499, 525
MboII	GAAGA	4 cut(s)	208, 275, 302, 325
MhlI	GDGCHC	2 cut(s)	120, 276
MluCI	AATT	3 cut(s)	61, 466, 475
Mly113I	GGCGCC	2 cut(s)	250, 402
MlyI	GAGTC	2 cut(s)	143, 226
MmeI	TCCRAC	1 cut(s)	114
MroNI	GCCGGC	1 cut(s)	382
MseI	TTAA	1 cut(s)	429
MspA1I	CMGCKG	4 cut(s)	52, 123, 144, 367
MspI	CCGG	3 cut(s)	224, 328, 383
MspR9I	CCNGG	4 cut(s)	80, 224, 328, 329
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	4 cut(s)	32, 34, 144, 210
MwoI	GCNNNNNNNGC	3 cut(s)	199, 249, 341
NaeI	GCCGGC	1 cut(s)	384
NarI	GGCGCC	2 cut(s)	250, 402
NciI	CCSGG	3 cut(s)	224, 328, 329
NdeII	GATC	3 cut(s)	56, 499, 525
NgoMIV	GCCGGC	1 cut(s)	382
NlaIV	GGNNCC	4 cut(s)	203, 228, 251, 403
NmuCI	GTSAC	2 cut(s)	110, 374
PcsI	WCGNNNNNNNCGW	2 cut(s)	405, 543
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	150, 358
Pfl23II	CGTACG	1 cut(s)	336
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	7 cut(s)	54, 125, 146, 209, 334, 366, 406
Ple19I	CGATCG	1 cut(s)	59
PleI	GAGTC	2 cut(s)	142, 225
PluTI	GGCGCC	2 cut(s)	253, 405
PmaCI	CACGTG	3 cut(s)	104, 115, 355
PmlI	CACGTG	3 cut(s)	104, 115, 355
PpsI	GAGTC	2 cut(s)	142, 225
Ppu21I	YACGTR	3 cut(s)	104, 115, 355
PshAI	GACNNNNGTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	78
PspCI	CACGTG	3 cut(s)	104, 115, 355
PspEI	GGTNACC	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	78
PspLI	CGTACG	1 cut(s)	336
PspN4I	GGNNCC	4 cut(s)	203, 228, 251, 403
PspPI	GGNCC	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	296
PvuI	CGATCG	1 cut(s)	59
PvuII	CAGCTG	2 cut(s)	52, 367
RsaI	GTAC	2 cut(s)	338, 398
RsaNI	GTAC	2 cut(s)	337, 397
SacII	CCGCGG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	7 cut(s)	53, 124, 145, 208, 333, 365, 405
Sau3AI	GATC	3 cut(s)	56, 499, 525
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	2 cut(s)	143, 226
ScrFI	CCNGG	4 cut(s)	80, 224, 328, 329
SduI	GDGCHC	2 cut(s)	120, 276
SfoI	GGCGCC	2 cut(s)	251, 403
Sfr303I	CCGCGG	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	73
SmaI	CCCGGG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	61, 466, 475
SsiI	CCGC	9 cut(s)	5, 20, 123, 142, 144, 205, 208, 405, 422
SspDI	GGCGCC	2 cut(s)	249, 401
StyD4I	CCNGG	4 cut(s)	78, 222, 326, 327
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	3 cut(s)	106, 117, 357
TaqI	TCGA	2 cut(s)	59, 153
TasI	AATT	3 cut(s)	61, 466, 475
TauI	GCSGC	4 cut(s)	126, 147, 210, 407
TfiI	GAWTC	2 cut(s)	150, 358
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	110, 374
TseI	GCWGC	3 cut(s)	52, 332, 364
Tsp45I	GTSAC	2 cut(s)	110, 374
TspGWI	ACGGA	1 cut(s)	299
TspMI	CCCGGG	1 cut(s)	327
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	3 cut(s)	61, 466, 475
XmaI	CCCGGG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.