Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0017703

Physical Location & Seq

Genomic Coordinates Forward (+)

52713751 .. 52718429

Gene Structure 4679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG410800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCAGAACAGGAAGAGATTGCTCAGGATGAGTGTCTGGGTAACAAAGCCGAGAAGGGTGTAGTCAAGACATGGTGGCGGAGGTGGTGCGATGGGTGCGGCGGAGGAGATCATAGGCCCCATGGTGGTTGTGGTGGCGACGATTGTAAATCCGGTCAGGGGAGAGAGGGAGTGGAAGCTGTGATCGTGGTTGAACTGAACCGACAGAGGGAGGTCGCCTTCTTTCAAGAGGAAGGTGTGTATCAGTCTAAGACGAGGGAGACACAGGCGGCGTATGAGGATTTGCTTGGTGAGATTCAGCAACAGATGGATGGTCAGCAGCCGAGTATAATCGGTGGAGCGGCGGATGAGATTTTGGTTGTGATTAAGAATGAGAAGTTGAAGAATTCAGAGAAGAAATTGGAGATTGAAAAGCTTTTGCACCCTATACCAGATTCAGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

148

Amino Acids

16.46

Weight (kDa)

4.81

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRR2_plug	PF21188	88 - 146	1.5e-07	Pre-mRNA-splicing helicase BRR2 plug domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47191
pyrus_communis	pycom12g23590
rosa_laevigata	RLG00000000403 RLG00000012895 RLG00000012897
rosa_multiflora	Rmu_co8119870.1_g000001 Rmu_sc0008044.1_g000011
rosa_samantha	Rh3BG010400 Rh3CG010100 Rh3DG010800 Rh7AG391900 Rh7CG410800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	341
AciI	CCGC	6 cut(s)	79, 99, 102, 269, 341, 344
AcsI	RAATTY	1 cut(s)	385
AfiI	CCNNNNNNNGG	3 cut(s)	125, 159, 208
AgsI	TTSAA	4 cut(s)	194, 227, 382, 410
AluBI	AGCT	2 cut(s)	179, 415
AluI	AGCT	2 cut(s)	179, 415
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	3 cut(s)	86, 301, 305
BcoDI	GTCTC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	100, 270, 320, 342
BlsI	GCNGC	4 cut(s)	101, 271, 321, 343
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 159, 208
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	3 cut(s)	34, 316, 352
BseLI	CCNNNNNNNGG	3 cut(s)	125, 159, 208
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	125, 159, 208
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	109, 183
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	6 cut(s)	79, 99, 102, 269, 341, 344
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	109, 183
BssT1I	CCWWGG	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	24, 249
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	3 cut(s)	34, 316, 352
BstKTI	GATC	2 cut(s)	112, 186
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	109, 183
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	121
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	34, 316, 352
BtsIMutI	CAGTG	1 cut(s)	444
Cfr13I	GGNCC	1 cut(s)	117
CviAII	CATG	2 cut(s)	72, 122
CviJI	RGCY	5 cut(s)	50, 118, 179, 322, 415
CviKI_1	RGCY	5 cut(s)	50, 118, 179, 322, 415
DdeI	CTNAG	2 cut(s)	24, 249
DpnI	GATC	2 cut(s)	111, 185
DpnII	GATC	2 cut(s)	109, 183
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
EciI	GGCGGA	3 cut(s)	94, 117, 359
Eco130I	CCWWGG	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	75, 125
FaiI	YATR	6 cut(s)	73, 114, 123, 276, 329, 428
FatI	CATG	2 cut(s)	71, 121
Fnu4HI	GCNGC	4 cut(s)	100, 270, 320, 342
FokI	GGATG	3 cut(s)	41, 323, 359
Fsp4HI	GCNGC	4 cut(s)	100, 270, 320, 342
GluI	GCNGC	4 cut(s)	100, 270, 320, 342
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	2 cut(s)	75, 125
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	2 cut(s)	295, 434
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	302
Hpy188I	TCNGA	2 cut(s)	7, 391
Hpy188III	TCNNGA	3 cut(s)	26, 67, 227
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	49, 227, 229
HpyCH4V	TGCA	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	2 cut(s)	24, 249
Hsp92II	CATG	2 cut(s)	75, 125
Kzo9I	GATC	2 cut(s)	109, 183
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	5 cut(s)	11, 23, 143, 166, 251
Lsp1109I	GCAGC	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	111, 185
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	2 cut(s)	109, 183
MboII	GAAGA	3 cut(s)	26, 394, 406
MluCI	AATT	2 cut(s)	385, 398
MnlI	CCTC	8 cut(s)	75, 98, 160, 201, 205, 223, 249, 271
MseI	TTAA	1 cut(s)	366
MspI	CCGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	2 cut(s)	109, 183
NlaIII	CATG	2 cut(s)	75, 125
NlaIV	GGNNCC	1 cut(s)	119
NmeAIII	GCCGAG	2 cut(s)	76, 348
PfeI	GAWTC	2 cut(s)	295, 434
PkrI	GCNGC	4 cut(s)	101, 271, 321, 343
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	4 cut(s)	100, 270, 320, 342
Sau3AI	GATC	2 cut(s)	109, 183
Sau96I	GGNCC	1 cut(s)	117
SetI	ASST	5 cut(s)	86, 181, 216, 238, 417
Sse9I	AATT	2 cut(s)	385, 398
SsiI	CCGC	6 cut(s)	79, 99, 102, 269, 341, 344
StyI	CCWWGG	1 cut(s)	121
TasI	AATT	2 cut(s)	385, 398
TauI	GCSGC	3 cut(s)	102, 272, 344
TfiI	GAWTC	2 cut(s)	295, 434
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	1 cut(s)	319
TspRI	CASTG	1 cut(s)	444
XapI	RAATTY	1 cut(s)	385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.