RLG00000012895

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017703
Physical Location & Seq
Forward (+)
23563569 .. 23564009
441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012895

Sequence Viewer

Length: 318 bp
ATGATGGATTCGAAAAATCCCAATGTTGTGAGCAATCAAGAGATGAAACTCCCACATGGGTTTGTCGATAGAGAGCCCCAAGCTGGTGGAGAGGTTGGCCAAGTAGTCATTGATGAGGGTCTCATTGTCAACGTTGGAGGAGACGGGGTCGTGAAGGACGATGACGTGGCGGTCGGGGTCGATTTGGGTGGTTTTATACCAGCGTTCTCAGCCGTGGGAGTCACACACCATGAGGCTAGAGAATCTTGGGTGGGTGAGCATGAGGGAGGACTTGACCTGGAATTTGATGGAACAAACCCATACTGGATGCTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.25

Weight (kDa)

4.2

Isoelectric Point (pI)

10.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017703)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g47191
pyrus_communis pycom12g23590
rosa_laevigata RLG00000000403 RLG00000012895 RLG00000012897
rosa_multiflora Rmu_co8119870.1_g000001 Rmu_sc0008044.1_g000011
rosa_samantha Rh3BG010400 Rh3CG010100 Rh3DG010800 Rh7AG391900 Rh7CG410800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AciI CCGC 1 cut(s) 170
AclI AACGTT 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 83
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 2 cut(s) 125, 135
AoxI GGCC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AsuHPI GGTGA 1 cut(s) 266
AsuII TTCGAA 1 cut(s) 11
BalI TGGCCA 1 cut(s) 99
BanII GRGCYC 1 cut(s) 78
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 125, 135
BfaI CTAG 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 278
BmgBI CACGTC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 125, 135
BsmBI CGTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 99
Bso31I GGTCTC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 78
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 221
BspT104I TTCGAA 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 278
BstBI TTCGAA 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 208
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 312
BstMAI GTCTC 2 cut(s) 125, 135
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstXI CCANNNNNNTGG 1 cut(s) 86
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 312
CviAII CATG 3 cut(s) 56, 230, 260
CviJI RGCY 5 cut(s) 76, 83, 99, 212, 236
CviKI_1 RGCY 5 cut(s) 76, 83, 99, 212, 236
DdeI CTNAG 1 cut(s) 208
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 3 cut(s) 59, 233, 263
FaiI YATR 5 cut(s) 57, 197, 231, 261, 301
FatI CATG 3 cut(s) 55, 229, 259
FriOI GRGCYC 1 cut(s) 78
FspBI CTAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 99
Hin1II CATG 3 cut(s) 59, 233, 263
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 3 cut(s) 8, 219, 242
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 38, 151
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 2 cut(s) 132, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 208
HpySE526I ACGT 2 cut(s) 132, 165
Hsp92II CATG 3 cut(s) 59, 233, 263
LpnPI CCDG 5 cut(s) 69, 213, 263, 289, 290
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 132, 165
MaeIII GTNAC 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 6 cut(s) 85, 109, 131, 226, 256, 260
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 209
NlaIII CATG 3 cut(s) 59, 233, 263
NmuCI GTSAC 1 cut(s) 220
NspV TTCGAA 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 2 cut(s) 8, 242
PflFI GACNNNGTC 1 cut(s) 146
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp1406I AACGTT 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PsyI GACNNNGTC 1 cut(s) 146
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 78
SetI ASST 5 cut(s) 85, 96, 135, 168, 279
SfaNI GCATC 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 11
Sse9I AATT 1 cut(s) 281
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 276
TaiI ACGT 2 cut(s) 135, 168
TaqI TCGA 3 cut(s) 11, 66, 180
TasI AATT 1 cut(s) 281
TfiI GAWTC 2 cut(s) 8, 242
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 59
Tth111I GACNNNGTC 1 cut(s) 146
XapI RAATTY 1 cut(s) 281
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.