FvH4_6g50190

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016379
Physical Location & Seq
Reverse (-)
37403346 .. 37404706
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50190.t1

Sequence Viewer

Length: 672 bp
ATGCGTAAGGCTTACCTGCACATATTCTCCTTGTCGATCTTCTCGGTAATGGCTTTCAAAGCTATGCTCATTCTCTGTGCCTCTCTTCTCCTTATAACAACTCGGGTCTCATCCTATGATGAACATGAGCAAGTCGAGAAGAAGCTGGATCAAAGTGAACGCCGAAGTGTATTTAGTATGCCGCTATATCGGCGCATACCACCTGAACCGTCACCGGCACCGCTAAATCAGCCCGTTACTCCTCTACCAACTGGTTCGCCGTCGCCAGTCACGTGTACACAAGCAACACCACCCGTCAGTCGCCAGTACTATCAAAGTTTATTCAGCATGTCGCTATATCCGAACATTCATGATGAGCCTGAACCATCATCGTCACCGCTCAGCCAGACCATTACTACTCCACCAGGGTCGCCGTTGCCAGTCACATGTGCACGAGCAACGCCGCCAGCAAAGTCGACACCGCCCACTCCCATTGTGAAAACTAGCCGAGATTGTGTGCCGTTGTGTGGAGCGAGGTGCAAAGTAGAAACAAATAAGAAGATATGGAGGAGAATGTGCATGAAGTGTTGTGACCTGTGCAAATGTGTTCCGCCGGGACATTGTGGCACCAACATGGATAAGTGCGGCAAGTGCTACATTGATATGGAAGATCACGGCCATAAGTGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

224

Amino Acids

24.73

Weight (kDa)

8.89

Isoelectric Point (pI)

72.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 164 - 223 1.2e-10 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50190
malus_domestica MD09G1038300.v1.1
prunus_persica Prupe.3G279500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0170451
rosa_laevigata RLG00000002283 RLG00000021958
rosa_multiflora Rmu_sc0000172.1_g000001
rosa_rugosa Rorug07G0186400
rosa_samantha Rh2BG631900 Rh2CG601500 Rh2DG644600 Rh7AG330200 Rh7BG319900 Rh7CG347500
rosa_wichuraiana Rw2G051470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 24
AccB1I GGYRCC 2 cut(s) 217, 605
AccBSI CCGCTC 1 cut(s) 379
AccI GTMKAC 1 cut(s) 455
AciI CCGC 7 cut(s) 182, 221, 377, 443, 461, 590, 624
AclWI GGATC 1 cut(s) 156
AcoI YGGCCR 1 cut(s) 655
AcvI CACGTG 1 cut(s) 273
AfaI GTAC 2 cut(s) 277, 308
AfiI CCNNNNNNNGG 1 cut(s) 506
AflIII ACRYGT 2 cut(s) 272, 425
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 2 cut(s) 62, 145
AluI AGCT 2 cut(s) 62, 145
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 1 cut(s) 112
Alw44I GTGCAC 1 cut(s) 429
AlwI GGATC 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 1 cut(s) 655
ApaLI GTGCAC 1 cut(s) 429
AspLEI GCGC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 2 cut(s) 204, 366
AvaI CYCGRG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 433
BanI GGYRCC 2 cut(s) 217, 605
BauI CACGAG 1 cut(s) 432
BbrPI CACGTG 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 433
BccI CCATC 1 cut(s) 373
BceAI ACGGC 4 cut(s) 244, 397, 484, 670
BciT130I CCWGG 1 cut(s) 405
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 483
BfuAI ACCTGC 1 cut(s) 24
BisI GCNGC 3 cut(s) 182, 443, 625
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 3 cut(s) 183, 444, 626
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 2 cut(s) 405, 594
BmeT110I CYCGRG 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 219, 607
BmrFI CCNGG 2 cut(s) 405, 594
Bpu1102I GCTNAGC 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 594
BsaAI YACGTR 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 4 cut(s) 256, 266, 304, 419
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMII CTCAG 1 cut(s) 394
BseNI ACTGG 4 cut(s) 256, 266, 304, 419
BseRI GAGGAG 2 cut(s) 231, 562
BseSI GKGCMC 1 cut(s) 433
BshFI GGCC 1 cut(s) 657
BshNI GGYRCC 2 cut(s) 217, 605
BsiHKAI GWGCWC 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 215, 593
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 1 cut(s) 657
Bso31I GGTCTC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 433
Bsp1407I TGTACA 1 cut(s) 275
Bsp143I GATC 3 cut(s) 36, 148, 649
Bsp1720I GCTNAGC 1 cut(s) 380
BspACI CCGC 7 cut(s) 182, 221, 377, 443, 461, 590, 624
BspANI GGCC 1 cut(s) 657
BspCNI CTCAG 1 cut(s) 393
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 219, 607
BspMI ACCTGC 1 cut(s) 24
BspPI GGATC 1 cut(s) 156
BspT107I GGYRCC 2 cut(s) 217, 605
BspTNI GGTCTC 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 275
BsrI ACTGG 4 cut(s) 256, 266, 304, 419
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 3 cut(s) 36, 148, 649
BssSI CACGAG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 275
BstBAI YACGTR 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 380
BstF5I GGATG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 3 cut(s) 39, 151, 652
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 3 cut(s) 36, 148, 649
BstMWI GCNNNNNNNGC 4 cut(s) 59, 190, 229, 630
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 2 cut(s) 331, 429
BstSCI CCNGG 2 cut(s) 403, 592
BstSLI GKGCMC 1 cut(s) 433
BsuRI GGCC 1 cut(s) 657
BtsCI GGATG 1 cut(s) 110
BveI ACCTGC 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 447
CciI TCATGA 1 cut(s) 349
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 214
Csp6I GTAC 2 cut(s) 276, 307
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 6 cut(s) 125, 328, 350, 426, 559, 613
CviJI RGCY 9 cut(s) 11, 53, 62, 145, 232, 358, 384, 486, 657
CviKI_1 RGCY 9 cut(s) 11, 53, 62, 145, 232, 358, 384, 486, 657
CviQI GTAC 2 cut(s) 276, 307
DdeI CTNAG 1 cut(s) 380
DpnI GATC 3 cut(s) 38, 150, 651
DpnII GATC 3 cut(s) 36, 148, 649
EaeI YGGCCR 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 579
Eco31I GGTCTC 1 cut(s) 112
Eco72I CACGTG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 403
FaeI CATG 6 cut(s) 128, 331, 353, 429, 562, 616
FaqI GGGAC 1 cut(s) 609
FatI CATG 6 cut(s) 124, 327, 349, 425, 558, 612
FblI GTMKAC 1 cut(s) 455
Fnu4HI GCNGC 3 cut(s) 182, 443, 625
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 3 cut(s) 182, 443, 625
FspBI CTAG 1 cut(s) 483
GlaI GCGC 1 cut(s) 194
GluI GCNGC 3 cut(s) 182, 443, 625
HaeIII GGCC 1 cut(s) 657
HapII CCGG 2 cut(s) 215, 593
HhaI GCGC 1 cut(s) 195
Hin1II CATG 6 cut(s) 128, 331, 353, 429, 562, 616
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HpaII CCGG 2 cut(s) 215, 593
HphI GGTGA 2 cut(s) 204, 366
Hpy166II GTNNAC 5 cut(s) 158, 276, 278, 431, 456
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 2 cut(s) 136, 350
Hpy8I GTNNAC 5 cut(s) 158, 276, 278, 431, 456
Hpy99I CGWCG 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 5 cut(s) 19, 431, 519, 558, 579
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 190, 229, 630
HpyF3I CTNAG 1 cut(s) 380
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 6 cut(s) 128, 331, 353, 429, 562, 616
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 3 cut(s) 36, 148, 649
LmnI GCTCC 1 cut(s) 509
MaeI CTAG 1 cut(s) 483
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 6 cut(s) 210, 235, 268, 372, 421, 569
MalI GATC 3 cut(s) 38, 150, 651
MbiI CCGCTC 1 cut(s) 379
MboI GATC 3 cut(s) 36, 148, 649
MboII GAAGA 5 cut(s) 31, 77, 151, 550, 659
MhlI GDGCHC 1 cut(s) 433
MnlI CCTC 4 cut(s) 91, 252, 507, 540
MslI CAYNNNNRTG 2 cut(s) 611, 641
MspI CCGG 2 cut(s) 215, 593
MspR9I CCNGG 2 cut(s) 405, 594
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 4 cut(s) 59, 190, 229, 630
NciI CCSGG 1 cut(s) 594
NdeII GATC 3 cut(s) 36, 148, 649
NlaIII CATG 6 cut(s) 128, 331, 353, 429, 562, 616
NlaIV GGNNCC 2 cut(s) 219, 607
NmeAIII GCCGAG 1 cut(s) 512
NmuCI GTSAC 5 cut(s) 210, 268, 372, 421, 569
NspI RCATGY 2 cut(s) 331, 429
PagI TCATGA 1 cut(s) 349
PciI ACATGT 1 cut(s) 425
PcsI WCGNNNNNNNCGW 2 cut(s) 269, 338
PkrI GCNGC 3 cut(s) 183, 444, 626
PmaCI CACGTG 1 cut(s) 273
PmlI CACGTG 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 273
PscI ACATGT 1 cut(s) 425
PsiI TTATAA 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 403
PspCI CACGTG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 219, 607
RsaI GTAC 2 cut(s) 277, 308
RsaNI GTAC 2 cut(s) 276, 307
RseI CAYNNNNRTG 2 cut(s) 611, 641
SalI GTCGAC 1 cut(s) 454
SatI GCNGC 3 cut(s) 182, 443, 625
Sau3AI GATC 3 cut(s) 36, 148, 649
ScaI AGTACT 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 405, 594
SduI GDGCHC 1 cut(s) 433
SetI ASST 7 cut(s) 18, 64, 147, 205, 275, 518, 576
SmiMI CAYNNNNRTG 2 cut(s) 611, 641
SsiI CCGC 7 cut(s) 182, 221, 377, 443, 461, 590, 624
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 2 cut(s) 403, 592
TaaI ACNGT 1 cut(s) 210
TaiI ACGT 1 cut(s) 275
TaqI TCGA 3 cut(s) 35, 135, 455
TatI WGTACW 2 cut(s) 275, 306
TauI GCSGC 3 cut(s) 184, 445, 627
TseFI GTSAC 5 cut(s) 210, 268, 372, 421, 569
Tsp45I GTSAC 5 cut(s) 210, 268, 372, 421, 569
TspDTI ATGAA 3 cut(s) 135, 338, 575
VneI GTGCAC 1 cut(s) 429
XceI RCATGY 2 cut(s) 331, 429
XmiI GTMKAC 1 cut(s) 455
XspI CTAG 1 cut(s) 483
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.