Prupe.3G279500_v2.0.a1

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016379
Physical Location & Seq
Reverse (-)
25578004 .. 25579017
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G279500.1

Sequence Viewer

Length: 438 bp
ATGTACAAAATGGATTTCAAAGCTATGCTTCTTCTGTTTGCCTCTGTTCTCTTAGTTTCTGCTGAGGTCTCATCTAATCATGGTCCTCATGATCAGGAACTCAACATAAAGGATCGGTATATACGCTACGGTAATTTACGTAAATGGAATCCACTATTCAGGGCACCACCATCGCCACGTCAGATGAATGAAGCGGCTCCTACCGGAGTACTTGTGGTCATGCCACTTAGTGCTTCCCGAGTTAAGACCAACAAGGATTGCGTCCCGTTGTGTGACAAGAGGTGCAAAATAGAAACAGATAAGTATATCTGCAGGAGATTATGCATGGCATGCTGTGGCCGCTGCAAATGTGTACCTCCGGGAGATTATGGTAGCAACATGAACAAATGTGGCAAATGCTACACCGATAAATACTACAACGGATACAAGTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

146

Amino Acids

16.52

Weight (kDa)

9.24

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50190
malus_domestica MD09G1038300.v1.1
prunus_persica Prupe.3G279500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0170451
rosa_laevigata RLG00000002283 RLG00000021958
rosa_multiflora Rmu_sc0000172.1_g000001
rosa_rugosa Rorug07G0186400
rosa_samantha Rh2BG631900 Rh2CG601500 Rh2DG644600 Rh7AG330200 Rh7BG319900 Rh7CG347500
rosa_wichuraiana Rw2G051470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 2 cut(s) 194, 340
AclWI GGATC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 337
AdeI CACNNNGTG 1 cut(s) 230
AfaI GTAC 3 cut(s) 5, 210, 354
AgsI TTSAA 1 cut(s) 19
AjiI CACGTC 1 cut(s) 179
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 360
AvaI CYCGRG 1 cut(s) 237
AvaII GGWCC 1 cut(s) 83
BaeGI GKGCMC 2 cut(s) 166, 434
BanI GGYRCC 1 cut(s) 163
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 329
BccI CCATC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciVI GTATCC 1 cut(s) 416
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 310
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 3 cut(s) 195, 340, 343
BlsI GCNGC 3 cut(s) 196, 341, 344
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 83
BmeT110I CYCGRG 1 cut(s) 237
BmgBI CACGTC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 2 cut(s) 165, 198
BmrFI CCNGG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
BseMII CTCAG 1 cut(s) 54
BseSI GKGCMC 2 cut(s) 166, 434
BseXI GCAGC 1 cut(s) 329
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 2 cut(s) 204, 359
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 339
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 166, 434
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 91, 112
BspACI CCGC 2 cut(s) 194, 340
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 165, 198
BspMAI CTGCAG 1 cut(s) 314
BspPI GGATC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 73
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 2 cut(s) 91, 112
Bst4CI ACNGT 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 330
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 3 cut(s) 52, 63, 227
BstKTI GATC 2 cut(s) 94, 115
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 91, 112
BstMWI GCNNNNNNNGC 2 cut(s) 330, 339
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 310
BstSLI GKGCMC 2 cut(s) 166, 434
BstSNI TACGTA 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 329
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 156
BtrI CACGTC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 331
CciI TCATGA 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 83
CseI GACGC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 4, 209, 353
CviAII CATG 6 cut(s) 80, 89, 220, 325, 330, 379
CviJI RGCY 3 cut(s) 23, 197, 339
CviKI_1 RGCY 3 cut(s) 23, 197, 339
CviQI GTAC 3 cut(s) 4, 209, 353
DdeI CTNAG 3 cut(s) 52, 63, 227
DpnI GATC 2 cut(s) 93, 114
DpnII GATC 2 cut(s) 91, 112
DraIII CACNNNGTG 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 337
Eco105I TACGTA 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 326
FaeI CATG 6 cut(s) 83, 92, 223, 328, 333, 382
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 248
FatI CATG 6 cut(s) 79, 88, 219, 324, 329, 378
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 3 cut(s) 195, 340, 343
Fsp4HI GCNGC 3 cut(s) 195, 340, 343
GluI GCNGC 3 cut(s) 195, 340, 343
HaeIII GGCC 1 cut(s) 339
HapII CCGG 2 cut(s) 204, 359
HgaI GACGC 1 cut(s) 250
Hin1II CATG 6 cut(s) 83, 92, 223, 328, 333, 382
HinfI GANTC 1 cut(s) 148
HpaII CCGG 2 cut(s) 204, 359
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 3 cut(s) 89, 95, 237
Hpy8I GTNNAC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 2 cut(s) 139, 178
HpyCH4V TGCA 4 cut(s) 285, 312, 324, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 339
HpyF3I CTNAG 3 cut(s) 52, 63, 227
HpySE526I ACGT 2 cut(s) 139, 178
Hsp92II CATG 6 cut(s) 83, 92, 223, 328, 333, 382
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 91, 112
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 80, 145, 217, 298, 372
Lsp1109I GCAGC 1 cut(s) 329
MaeII ACGT 2 cut(s) 139, 178
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 93, 114
MboI GATC 2 cut(s) 91, 112
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 2 cut(s) 166, 434
MluCI AATT 1 cut(s) 133
MnlI CCTC 5 cut(s) 52, 58, 96, 273, 366
Mph1103I ATGCAT 1 cut(s) 326
MseI TTAA 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 2 cut(s) 204, 359
MspR9I CCNGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 330, 339
NciI CCSGG 1 cut(s) 360
NdeII GATC 2 cut(s) 91, 112
NlaIII CATG 6 cut(s) 83, 92, 223, 328, 333, 382
NlaIV GGNNCC 2 cut(s) 165, 198
NmuCI GTSAC 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 326
NspI RCATGY 1 cut(s) 333
PaeI GCATGC 1 cut(s) 333
PagI TCATGA 1 cut(s) 88
PfeI GAWTC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 358
PkrI GCNGC 3 cut(s) 196, 341, 344
Ppu21I YACGTR 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 165, 198
PspPI GGNCC 1 cut(s) 83
PstI CTGCAG 1 cut(s) 314
RsaI GTAC 3 cut(s) 5, 210, 354
RsaNI GTAC 3 cut(s) 4, 209, 353
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 3 cut(s) 195, 340, 343
Sau3AI GATC 2 cut(s) 91, 112
Sau96I GGNCC 1 cut(s) 83
ScaI AGTACT 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 2 cut(s) 166, 434
SetI ASST 6 cut(s) 25, 69, 142, 181, 284, 358
SfcI CTRYAG 1 cut(s) 310
SinI GGWCC 1 cut(s) 83
SnaBI TACGTA 1 cut(s) 140
SphI GCATGC 1 cut(s) 333
Sse9I AATT 1 cut(s) 133
SsiI CCGC 2 cut(s) 194, 340
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 2 cut(s) 142, 181
TasI AATT 1 cut(s) 133
TatI WGTACW 2 cut(s) 3, 208
TauI GCSGC 2 cut(s) 197, 342
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 200, 204, 395
TspGWI ACGGA 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 83
XceI RCATGY 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.