Rw2G051470

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0016379
Physical Location & Seq
Reverse (-)
79169772 .. 79170625
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051470.1

Sequence Viewer

Length: 450 bp
ATGGCTTTCAAAGCTATGCTCATTCTCTGTGCCTCTGTTCTCCTTGTCGCTACTAGGGTCTCATGCTATGACGATCACGAGAAAGTCAAGAAGAAGGATCAAAGTGAATGCCAAAGTTTACTTGGTACGTGGCTATATCCGCGCAATGTTCCTAAAGCACCCGAATCATCACCGTTACTGCCAAATCAGCCCATTGCTACTCTACCACGGTCGCCCTCGCCAATCACCTGTGCACAAGCAAAACCACCCGCCAGTCACCAGCCCCAAAATTGCATGCCGTTGTGTGCAGCAAGGTGCAGAGTAGAACCACACAGGAATATATGCAGGAGGTTGTGTATGAAGTGCTGTAGCCGGTGCAAATGTGTTCCGCCGGGAGAATATGGCGCCAACATGGATAAGTGTGGCAAGTGCTACACTGATATGGAGTATCACGGCCATAAGTGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

149

Amino Acids

16.59

Weight (kDa)

8.96

Isoelectric Point (pI)

70.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 90 - 149 2.5e-13 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50190
malus_domestica MD09G1038300.v1.1
prunus_persica Prupe.3G279500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0170451
rosa_laevigata RLG00000002283 RLG00000021958
rosa_multiflora Rmu_sc0000172.1_g000001
rosa_rugosa Rorug07G0186400
rosa_samantha Rh2BG631900 Rh2CG601500 Rh2DG644600 Rh7AG330200 Rh7BG319900 Rh7CG347500
rosa_wichuraiana Rw2G051470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AccII CGCG 1 cut(s) 142
AciI CCGC 3 cut(s) 140, 249, 368
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 433
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 1 cut(s) 127
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 64
Alw44I GTGCAC 1 cut(s) 231
AlwI GGATC 1 cut(s) 105
AoxI GGCC 1 cut(s) 433
ApaLI GTGCAC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 287
AspLEI GCGC 2 cut(s) 144, 386
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 3 cut(s) 162, 217, 248
BaeGI GKGCMC 2 cut(s) 235, 446
BanI GGYRCC 1 cut(s) 383
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 299
BceAI ACGGC 2 cut(s) 262, 448
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 346
BfoI RGCGCY 1 cut(s) 387
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 384
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bse118I RCCGGY 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 2 cut(s) 151, 192
BseDI CCNNGG 1 cut(s) 206
BseMI GCAATG 2 cut(s) 151, 192
BseNI ACTGG 1 cut(s) 252
BseSI GKGCMC 2 cut(s) 235, 446
BseXI GCAGC 1 cut(s) 299
BsgI GTGCAG 2 cut(s) 306, 316
Bsh1236I CGCG 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 212
BshFI GGCC 1 cut(s) 435
BshNI GGYRCC 1 cut(s) 383
BsiEI CGRYCG 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 235
BsiSI CCGG 2 cut(s) 352, 371
BsmAI GTCTC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 1 cut(s) 435
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 235, 446
Bsp143I GATC 2 cut(s) 73, 97
BspACI CCGC 3 cut(s) 140, 249, 368
BspANI GGCC 1 cut(s) 435
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 385
BspPI GGATC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 151, 192
BsrFI RCCGGY 1 cut(s) 351
BsrI ACTGG 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 2 cut(s) 73, 97
BssNI GRCGYC 1 cut(s) 384
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 174, 210
BstACI GRCGYC 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 206
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 2 cut(s) 144, 386
BstKTI GATC 2 cut(s) 76, 100
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 2 cut(s) 73, 97
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 4 cut(s) 11, 139, 187, 441
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 346
BstSLI GKGCMC 2 cut(s) 235, 446
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 299
BsuRI GGCC 1 cut(s) 435
BtgI CCRYGG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 275
CfoI GCGC 2 cut(s) 144, 386
Cfr10I RCCGGY 1 cut(s) 351
Csp6I GTAC 1 cut(s) 126
CviAII CATG 4 cut(s) 63, 274, 391, 447
CviJI RGCY 7 cut(s) 5, 14, 133, 190, 262, 351, 435
CviKI_1 RGCY 7 cut(s) 5, 14, 133, 190, 262, 351, 435
CviQI GTAC 1 cut(s) 126
DinI GGCGCC 1 cut(s) 385
DpnI GATC 2 cut(s) 75, 99
DpnII GATC 2 cut(s) 73, 97
EaeI YGGCCR 1 cut(s) 433
EciI GGCGGA 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 64
EgeI GGCGCC 1 cut(s) 385
EheI GGCGCC 1 cut(s) 385
FaeI CATG 4 cut(s) 66, 277, 394, 450
FatI CATG 4 cut(s) 62, 273, 390, 446
FauI CCCGC 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 54
GlaI GCGC 2 cut(s) 143, 385
GluI GCNGC 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 1 cut(s) 435
HapII CCGG 2 cut(s) 352, 371
HhaI GCGC 2 cut(s) 144, 386
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 4 cut(s) 66, 277, 394, 450
Hin6I GCGC 2 cut(s) 142, 384
HinP1I GCGC 2 cut(s) 142, 384
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 352, 371
HphI GGTGA 3 cut(s) 162, 217, 248
Hpy166II GTNNAC 2 cut(s) 119, 233
Hpy188III TCNNGA 2 cut(s) 77, 88
Hpy8I GTNNAC 2 cut(s) 119, 233
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 174, 210
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 6 cut(s) 233, 273, 287, 297, 324, 357
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 139, 187, 441
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 4 cut(s) 66, 277, 394, 450
HspAI GCGC 2 cut(s) 142, 384
KasI GGCGCC 1 cut(s) 383
Kzo9I GATC 2 cut(s) 73, 97
LpnPI CCDG 7 cut(s) 241, 265, 272, 298, 310, 365, 384
Lsp1109I GCAGC 1 cut(s) 299
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 174, 254
MalI GATC 2 cut(s) 75, 99
MboI GATC 2 cut(s) 73, 97
MboII GAAGA 1 cut(s) 103
MhlI GDGCHC 2 cut(s) 235, 446
MluCI AATT 1 cut(s) 268
Mly113I GGCGCC 1 cut(s) 384
MnlI CCTC 3 cut(s) 43, 226, 321
MslI CAYNNNNRTG 1 cut(s) 419
MspI CCGG 2 cut(s) 352, 371
MspR9I CCNGG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 113
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 4 cut(s) 11, 139, 187, 441
NarI GGCGCC 1 cut(s) 384
NciI CCSGG 1 cut(s) 372
NdeII GATC 2 cut(s) 73, 97
NlaIII CATG 4 cut(s) 66, 277, 394, 450
NlaIV GGNNCC 1 cut(s) 385
NmuCI GTSAC 1 cut(s) 254
NspI RCATGY 1 cut(s) 277
PaeI GCATGC 1 cut(s) 277
PctI GAATGC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 289
PluTI GGCGCC 1 cut(s) 387
Ppu21I YACGTR 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 385
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 419
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 73, 97
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 2 cut(s) 235, 446
SetI ASST 5 cut(s) 16, 131, 230, 296, 332
SfcI CTRYAG 1 cut(s) 346
SfoI GGCGCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 419
SphI GCATGC 1 cut(s) 277
Sse9I AATT 1 cut(s) 268
SsiI CCGC 3 cut(s) 140, 249, 368
SspDI GGCGCC 1 cut(s) 383
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 174, 210
TaiI ACGT 1 cut(s) 131
TasI AATT 1 cut(s) 268
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 353
TspRI CASTG 1 cut(s) 421
VneI GTGCAC 1 cut(s) 231
XceI RCATGY 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.