Rmu_sc0000172.1_g000001

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000172.1
OG0016379
Physical Location & Seq
Reverse (-)
749 .. 1345
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000172.1_g000001.1.cds

Sequence Viewer

Length: 510 bp
atgtttggatcaattatatccttctgtgttgcgttcgaacaggatcaaagtgaacgccaaagtttacttggtacgtggctatatccgcgcaatgttcctaaagcacccgaatcatcaccgttactgccaaatcagcccattgctactctaccacggtcgtcctcgccgatcacctgtgcacaagcaaaaccacccgctagtcaccagccccaaagtttattaagtatgtggctatatccgagcattcctgaagcaccctcgccagtcatctgtgcacaagcaacaccacccgcaacatcattcactcccattgtgaatactcacagagattgcatgccgttgtgtgcagcgaggtgcagagtagaaccacacaggaagatatgcaggaggttgtgtatgaagtgctgtagccggtgcaaatgtgttccgccgggagagtatggcgccaacatggataagtgtggcaagtgctacactgatatggagtatcacggccataagtgcccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

169

Amino Acids

18.69

Weight (kDa)

8.74

Isoelectric Point (pI)

68.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50190
malus_domestica MD09G1038300.v1.1
prunus_persica Prupe.3G279500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0170451
rosa_laevigata RLG00000002283 RLG00000021958
rosa_multiflora Rmu_sc0000172.1_g000001
rosa_rugosa Rorug07G0186400
rosa_samantha Rh2BG631900 Rh2CG601500 Rh2DG644600 Rh7AG330200 Rh7BG319900 Rh7CG347500
rosa_wichuraiana Rw2G051470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AccII CGCG 1 cut(s) 88
AciI CCGC 4 cut(s) 86, 195, 291, 428
AclWI GGATC 2 cut(s) 16, 51
AcoI YGGCCR 1 cut(s) 493
AcuI CTGAAG 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 1 cut(s) 73
Alw21I GWGCWC 2 cut(s) 181, 277
Alw44I GTGCAC 2 cut(s) 177, 273
AlwI GGATC 2 cut(s) 16, 51
AoxI GGCC 1 cut(s) 493
ApaLI GTGCAC 2 cut(s) 177, 273
ApeKI GCWGC 1 cut(s) 347
AspLEI GCGC 2 cut(s) 90, 446
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 3 cut(s) 108, 163, 194
AsuII TTCGAA 1 cut(s) 36
BaeGI GKGCMC 3 cut(s) 181, 277, 506
BanI GGYRCC 1 cut(s) 443
Bbv12I GWGCWC 2 cut(s) 181, 277
BbvI GCAGC 1 cut(s) 359
BceAI ACGGC 2 cut(s) 322, 508
BcnI CCSGG 1 cut(s) 432
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 1 cut(s) 447
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 432
BsaAI YACGTR 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bse118I RCCGGY 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 2 cut(s) 97, 138
BseDI CCNNGG 1 cut(s) 152
BseMI GCAATG 2 cut(s) 97, 138
BseNI ACTGG 1 cut(s) 263
BseSI GKGCMC 3 cut(s) 181, 277, 506
BseXI GCAGC 1 cut(s) 359
BsgI GTGCAG 2 cut(s) 366, 376
Bsh1236I CGCG 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 1 cut(s) 495
BshNI GGYRCC 1 cut(s) 443
BsiEI CGRYCG 1 cut(s) 158
BsiHKAI GWGCWC 2 cut(s) 181, 277
BsiSI CCGG 2 cut(s) 412, 431
BsmI GAATGC 1 cut(s) 243
BsnI GGCC 1 cut(s) 495
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 3 cut(s) 181, 277, 506
Bsp143I GATC 3 cut(s) 8, 43, 168
BspACI CCGC 4 cut(s) 86, 195, 291, 428
BspANI GGCC 1 cut(s) 495
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 445
BspPI GGATC 2 cut(s) 16, 51
BspT104I TTCGAA 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 97, 138
BsrFI RCCGGY 1 cut(s) 411
BsrI ACTGG 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 3 cut(s) 8, 43, 168
BssNI GRCGYC 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 120, 156
BstACI GRCGYC 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 75
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 152
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 2 cut(s) 90, 446
BstKTI GATC 3 cut(s) 11, 46, 171
BstMBI GATC 3 cut(s) 8, 43, 168
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 3 cut(s) 85, 133, 501
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 406
BstSLI GKGCMC 3 cut(s) 181, 277, 506
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 359
BsuRI GGCC 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 335
CfoI GCGC 2 cut(s) 90, 446
Cfr10I RCCGGY 1 cut(s) 411
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 334, 451, 507
CviJI RGCY 6 cut(s) 79, 136, 208, 232, 411, 495
CviKI_1 RGCY 6 cut(s) 79, 136, 208, 232, 411, 495
CviQI GTAC 1 cut(s) 72
DinI GGCGCC 1 cut(s) 445
DpnI GATC 3 cut(s) 10, 45, 170
DpnII GATC 3 cut(s) 8, 43, 168
EaeI YGGCCR 1 cut(s) 493
EciI GGCGGA 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 445
EheI GGCGCC 1 cut(s) 445
FaeI CATG 3 cut(s) 337, 454, 510
FatI CATG 3 cut(s) 333, 450, 506
FauI CCCGC 2 cut(s) 202, 298
Fnu4HI GCNGC 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 198
GlaI GCGC 2 cut(s) 89, 445
GluI GCNGC 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 1 cut(s) 495
HapII CCGG 2 cut(s) 412, 431
HhaI GCGC 2 cut(s) 90, 446
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 3 cut(s) 337, 454, 510
Hin6I GCGC 2 cut(s) 88, 444
HinP1I GCGC 2 cut(s) 88, 444
HinfI GANTC 1 cut(s) 110
HpaII CCGG 2 cut(s) 412, 431
HphI GGTGA 3 cut(s) 108, 163, 194
Hpy166II GTNNAC 4 cut(s) 53, 65, 179, 275
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 4 cut(s) 53, 65, 179, 275
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 120, 156
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 7 cut(s) 179, 275, 333, 347, 357, 384, 417
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 133, 501
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 3 cut(s) 337, 454, 510
HspAI GCGC 2 cut(s) 88, 444
KasI GGCGCC 1 cut(s) 443
Kzo9I GATC 3 cut(s) 8, 43, 168
LpnPI CCDG 9 cut(s) 26, 187, 218, 261, 276, 358, 370, 425, 444
Lsp1109I GCAGC 1 cut(s) 359
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 120, 200
MalI GATC 3 cut(s) 10, 45, 170
MboI GATC 3 cut(s) 8, 43, 168
MboII GAAGA 1 cut(s) 388
MhlI GDGCHC 3 cut(s) 181, 277, 506
MluCI AATT 1 cut(s) 12
Mly113I GGCGCC 1 cut(s) 444
MnlI CCTC 4 cut(s) 172, 268, 345, 381
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 479
MspI CCGG 2 cut(s) 412, 431
MspR9I CCNGG 1 cut(s) 432
Mva1269I GAATGC 1 cut(s) 243
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 3 cut(s) 85, 133, 501
NarI GGCGCC 1 cut(s) 444
NciI CCSGG 1 cut(s) 432
NdeII GATC 3 cut(s) 8, 43, 168
NlaIII CATG 3 cut(s) 337, 454, 510
NlaIV GGNNCC 1 cut(s) 445
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 337
NspV TTCGAA 1 cut(s) 36
PaeI GCATGC 1 cut(s) 337
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PctI GAATGC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 349
PluTI GGCGCC 1 cut(s) 447
Ppu21I YACGTR 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 445
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 479
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 3 cut(s) 8, 43, 168
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 3 cut(s) 181, 277, 506
SetI ASST 4 cut(s) 77, 176, 356, 392
SfcI CTRYAG 1 cut(s) 406
SfoI GGCGCC 1 cut(s) 445
SfuI TTCGAA 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 479
SphI GCATGC 1 cut(s) 337
Sse9I AATT 1 cut(s) 12
SsiI CCGC 4 cut(s) 86, 195, 291, 428
SspDI GGCGCC 1 cut(s) 443
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 120, 156
TaiI ACGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 413
TspRI CASTG 1 cut(s) 481
VneI GTGCAC 2 cut(s) 177, 273
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.