RLG00000021958

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016379
Physical Location & Seq
Reverse (-)
79525131 .. 79527160
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021958

Sequence Viewer

Length: 705 bp
ATGTTTCTATGGGGTTGTTCTCTGAACACTGCTTTGGGGCCACCTTACCAGGTTTCGGCAGATACCAACTTTATCAATTTCTCTATCCAGAATAAGTTGGATCTGCAGAAGGGAATGATGAACTGCCCATATGCAAAGTGCACTCCTGGTATCACAGATTATGTAAGGGTAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTCTCATCCTATGATGATCTCGAGAAAGTCGAGAAGAAGGATCAAAGTGAACGCCAAAGTTTACTCGGTACATGGCTACATCCTCGCTTTCCTAAAGCACCCGAATCATCACTGTCACAGCTAAATCAGCCCATTACTACTCTAACAGGGTCGCCCTTGTTGGTCACCTGTGCACAAGCAGCACCACCCTCCAGTCACAAGTCCCAAAGTTTATTCAGTATGTGGCTATACCCGGGCATTCTTGAAGCACCCTCGCCAGTCACCTGTGCACAAGCAACACAACCAGCAGCATCGTCCACTCCCATTGTGAAGACTCACAGAGATTGCATGCCATTGTGTGCAGCGAGGTGCAGAGTAGAACCACATAGGAAGATATGCAGGAGATTGTGTATGAAGTGCTGTAGCGGGTGCAAATGTGCTCCGCCAGGAGAATATGGTGCCAACATGGATAAGTGTGGCAAGTGCTACTATGATATGGAGTATCACGGCCATAAGTGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

235

Amino Acids

26.01

Weight (kDa)

8.71

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 175 - 234 2.5e-11 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50190
malus_domestica MD09G1038300.v1.1
prunus_persica Prupe.3G279500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0170451
rosa_laevigata RLG00000002283 RLG00000021958
rosa_multiflora Rmu_sc0000172.1_g000001
rosa_rugosa Rorug07G0186400
rosa_samantha Rh2BG631900 Rh2CG601500 Rh2DG644600 Rh7AG330200 Rh7BG319900 Rh7CG347500
rosa_wichuraiana Rw2G051470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 638
AciI CCGC 2 cut(s) 606, 623
AclWI GGATC 2 cut(s) 108, 249
AcoI YGGCCR 1 cut(s) 688
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 3 cut(s) 48, 145, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 2 cut(s) 175, 322
AluI AGCT 2 cut(s) 175, 322
Alw21I GWGCWC 4 cut(s) 143, 376, 472, 622
Alw26I GTCTC 1 cut(s) 208
Alw44I GTGCAC 3 cut(s) 139, 372, 468
AlwI GGATC 2 cut(s) 108, 249
Ama87I CYCGRG 2 cut(s) 221, 433
AoxI GGCC 2 cut(s) 38, 688
ApaLI GTGCAC 3 cut(s) 139, 372, 468
ApeKI GCWGC 3 cut(s) 380, 488, 542
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 2 cut(s) 434, 435
AsuHPI GGTGA 2 cut(s) 358, 454
AvaI CYCGRG 2 cut(s) 221, 433
BaeGI GKGCMC 4 cut(s) 143, 376, 472, 701
BanI GGYRCC 1 cut(s) 638
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 4 cut(s) 143, 376, 472, 622
BbvI GCAGC 3 cut(s) 392, 500, 554
BceAI ACGGC 1 cut(s) 703
BciT130I CCWGG 3 cut(s) 50, 147, 627
BcnI CCSGG 2 cut(s) 434, 435
BcoDI GTCTC 1 cut(s) 208
BfmI CTRYAG 2 cut(s) 104, 601
BisI GCNGC 3 cut(s) 381, 489, 543
BlsI GCNGC 3 cut(s) 382, 490, 544
Bme1390I CCNGG 5 cut(s) 50, 147, 434, 435, 627
BmeT110I CYCGRG 2 cut(s) 221, 433
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 39, 640
BmrFI CCNGG 5 cut(s) 50, 147, 434, 435, 627
BmsI GCATC 1 cut(s) 500
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 2 cut(s) 434, 435
BsaJI CCNNGG 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 393, 458
BseBI CCWGG 3 cut(s) 50, 147, 627
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 2 cut(s) 206, 280
BseLI CCNNNNNNNGG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 393, 458
BseSI GKGCMC 4 cut(s) 143, 376, 472, 701
BseXI GCAGC 3 cut(s) 392, 500, 554
BsgI GTGCAG 2 cut(s) 561, 571
BshFI GGCC 2 cut(s) 40, 690
BshNI GGYRCC 1 cut(s) 638
BsiHKAI GWGCWC 4 cut(s) 143, 376, 472, 622
BsiHKCI CYCGRG 2 cut(s) 221, 433
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 2 cut(s) 40, 690
BsoBI CYCGRG 2 cut(s) 221, 433
Bsp1286I GDGCHC 5 cut(s) 143, 376, 472, 622, 701
Bsp143I GATC 3 cut(s) 100, 217, 241
BspACI CCGC 2 cut(s) 606, 623
BspANI GGCC 2 cut(s) 40, 690
BspLI GGNNCC 2 cut(s) 39, 640
BspMAI CTGCAG 1 cut(s) 108
BspPI GGATC 2 cut(s) 108, 249
BspT107I GGYRCC 1 cut(s) 638
BsrI ACTGG 2 cut(s) 393, 458
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 3 cut(s) 100, 217, 241
Bst2UI CCWGG 3 cut(s) 50, 147, 627
Bst4CI ACNGT 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 530
BstEII GGTNACC 1 cut(s) 364
BstF5I GGATG 2 cut(s) 206, 280
BstKTI GATC 3 cut(s) 103, 220, 244
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 3 cut(s) 100, 217, 241
BstMWI GCNNNNNNNGC 3 cut(s) 328, 380, 696
BstNI CCWGG 3 cut(s) 50, 147, 627
BstNSI RCATGY 1 cut(s) 532
BstPI GGTNACC 1 cut(s) 364
BstSCI CCNGG 5 cut(s) 48, 145, 432, 433, 625
BstSFI CTRYAG 2 cut(s) 104, 601
BstSLI GKGCMC 4 cut(s) 143, 376, 472, 701
BstV1I GCAGC 3 cut(s) 392, 500, 554
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 2 cut(s) 40, 690
BtsCI GGATG 2 cut(s) 206, 280
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 27, 311
Cac8I GCNNGC 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 433
CsiI ACCWGGT 1 cut(s) 48
Csp6I GTAC 1 cut(s) 270
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 4 cut(s) 273, 529, 646, 702
CviJI RGCY 7 cut(s) 40, 175, 277, 322, 331, 427, 690
CviKI_1 RGCY 7 cut(s) 40, 175, 277, 322, 331, 427, 690
CviQI GTAC 1 cut(s) 270
DpnI GATC 3 cut(s) 102, 219, 243
DpnII GATC 3 cut(s) 100, 217, 241
EaeI YGGCCR 1 cut(s) 688
EciI GGCGGA 1 cut(s) 612
Eco88I CYCGRG 2 cut(s) 221, 433
Eco91I GGTNACC 1 cut(s) 364
EcoO65I GGTNACC 1 cut(s) 364
EcoRII CCWGG 3 cut(s) 48, 145, 625
FaeI CATG 4 cut(s) 276, 532, 649, 705
FaqI GGGAC 1 cut(s) 388
FatI CATG 4 cut(s) 272, 528, 645, 701
FauI CCCGC 1 cut(s) 599
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 3 cut(s) 381, 489, 543
FokI GGATG 2 cut(s) 193, 267
Fsp4HI GCNGC 3 cut(s) 381, 489, 543
GluI GCNGC 3 cut(s) 381, 489, 543
GsuI CTGGAG 1 cut(s) 376
HaeIII GGCC 2 cut(s) 40, 690
HapII CCGG 1 cut(s) 434
Hin1II CATG 4 cut(s) 276, 532, 649, 705
HinfI GANTC 2 cut(s) 305, 514
HpaII CCGG 1 cut(s) 434
HphI GGTGA 2 cut(s) 358, 454
Hpy166II GTNNAC 6 cut(s) 141, 251, 263, 374, 470, 498
Hpy188I TCNGA 2 cut(s) 24, 192
Hpy188III TCNNGA 5 cut(s) 88, 221, 223, 232, 443
Hpy8I GTNNAC 6 cut(s) 141, 251, 263, 374, 470, 498
HpyAV CCTTC 2 cut(s) 103, 232
HpyCH4III ACNGT 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 3 cut(s) 328, 380, 696
Hsp92II CATG 4 cut(s) 276, 532, 649, 705
Kzo9I GATC 3 cut(s) 100, 217, 241
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 3 cut(s) 392, 500, 554
LweI GCATC 1 cut(s) 500
MabI ACCWGGT 1 cut(s) 48
MaeIII GTNAC 4 cut(s) 315, 364, 395, 460
MalI GATC 3 cut(s) 102, 219, 243
MboI GATC 3 cut(s) 100, 217, 241
MboII GAAGA 3 cut(s) 247, 523, 583
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 5 cut(s) 143, 376, 472, 622, 701
MluCI AATT 1 cut(s) 76
MlyI GAGTC 1 cut(s) 508
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 4 cut(s) 294, 400, 463, 540
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 5 cut(s) 50, 147, 434, 435, 627
Mva1269I GAATGC 1 cut(s) 438
MvaI CCWGG 3 cut(s) 50, 147, 627
MwoI GCNNNNNNNGC 3 cut(s) 328, 380, 696
NciI CCSGG 2 cut(s) 434, 435
NdeI CATATG 1 cut(s) 130
NdeII GATC 3 cut(s) 100, 217, 241
NlaIII CATG 4 cut(s) 276, 532, 649, 705
NlaIV GGNNCC 2 cut(s) 39, 640
NmuCI GTSAC 4 cut(s) 315, 364, 395, 460
NspI RCATGY 1 cut(s) 532
PaeI GCATGC 1 cut(s) 532
PaeR7I CTCGAG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 3 cut(s) 382, 490, 544
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Psp6I CCWGG 3 cut(s) 48, 145, 625
PspEI GGTNACC 1 cut(s) 364
PspGI CCWGG 3 cut(s) 48, 145, 625
PspN4I GGNNCC 2 cut(s) 39, 640
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 108
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SatI GCNGC 3 cut(s) 381, 489, 543
Sau3AI GATC 3 cut(s) 100, 217, 241
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 508
ScrFI CCNGG 5 cut(s) 50, 147, 434, 435, 627
SduI GDGCHC 5 cut(s) 143, 376, 472, 622, 701
SetI ASST 7 cut(s) 46, 54, 177, 324, 371, 467, 551
SexAI ACCWGGT 1 cut(s) 48
SfaNI GCATC 1 cut(s) 500
SfcI CTRYAG 2 cut(s) 104, 601
Sfr274I CTCGAG 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 221
SmaI CCCGGG 1 cut(s) 435
SmlI CTYRAG 2 cut(s) 176, 221
SmoI CTYRAG 2 cut(s) 176, 221
SphI GCATGC 1 cut(s) 532
Sse9I AATT 1 cut(s) 76
SsiI CCGC 2 cut(s) 606, 623
StyD4I CCNGG 5 cut(s) 48, 145, 432, 433, 625
TaaI ACNGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 222, 231
TasI AATT 1 cut(s) 76
TfiI GAWTC 1 cut(s) 305
TscAI CASTG 2 cut(s) 34, 318
TseFI GTSAC 4 cut(s) 315, 364, 395, 460
TseI GCWGC 3 cut(s) 380, 488, 542
Tsp45I GTSAC 4 cut(s) 315, 364, 395, 460
TspDTI ATGAA 2 cut(s) 134, 608
TspMI CCCGGG 1 cut(s) 433
TspRI CASTG 2 cut(s) 34, 318
VneI GTGCAC 3 cut(s) 139, 372, 468
XceI RCATGY 1 cut(s) 532
XhoI CTCGAG 1 cut(s) 221
XmaI CCCGGG 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.