Rh7BG319900

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016379
Physical Location & Seq
Reverse (-)
31147503 .. 31148687
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG319900.1

Sequence Viewer

Length: 564 bp
ATGGCTTTCAAAGCTATGCTCATTCTCTGTGCCTCTGTTCTCCTTGTCGCTACTAGGGTCTCATGCTATGATGATCACAAGAAAGTTGAGAAGAAGGATCAAAGTGAACGCCAAAGTTTACTCGGTACGTGGCTATATCCGCACAATGTTCCTAAAGCACCTGAATCATCACCGCTACTGCTAAATCAGCCCATTGCTACTCTACCACGGTCGCCCTCGCCGGTCACCTGTGCACAAGCAAAACCACCTGCCAGTCACCAGTCCCAAAGTTTATTAAGTATGTGGCTATATTCGGGCATTCCTGAAGCACCCTCGCCAATCATCTGTGCACAAGCAACACCACCCGCAACATCATCCACTCCCATTGTGAATACTCACAGAGATTGCATGCCGTTGTGTGCAGCGAGGTGCAAAGTAGAACCACACAGGAAGATATGCAGGAGATTGTGTATGAAGTGCTGTAGCCGGTGCAAATGTGTTCCGCCGGGAGAATATGGCGCCAACATGGATAAGTGTGGCAAGTGCTACACTGATATGGAGTATCACGGCCATAAGTGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

187

Amino Acids

20.6

Weight (kDa)

8.94

Isoelectric Point (pI)

66.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 128 - 187 1.4e-13 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50190
malus_domestica MD09G1038300.v1.1
prunus_persica Prupe.3G279500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0170451
rosa_laevigata RLG00000002283 RLG00000021958
rosa_multiflora Rmu_sc0000172.1_g000001
rosa_rugosa Rorug07G0186400
rosa_samantha Rh2BG631900 Rh2CG601500 Rh2DG644600 Rh7AG330200 Rh7BG319900 Rh7CG347500
rosa_wichuraiana Rw2G051470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 256
Acc36I ACCTGC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 497
AciI CCGC 4 cut(s) 140, 173, 345, 482
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 547
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 1 cut(s) 127
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 2 cut(s) 235, 331
Alw26I GTCTC 1 cut(s) 64
Alw44I GTGCAC 2 cut(s) 231, 327
AlwI GGATC 1 cut(s) 105
AoxI GGCC 1 cut(s) 547
ApaLI GTGCAC 2 cut(s) 231, 327
ApeKI GCWGC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 500
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 3 cut(s) 162, 217, 248
BaeGI GKGCMC 3 cut(s) 235, 331, 560
BanI GGYRCC 1 cut(s) 497
Bbv12I GWGCWC 2 cut(s) 235, 331
BbvI GCAGC 1 cut(s) 413
BceAI ACGGC 2 cut(s) 376, 562
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 460
BfoI RGCGCY 1 cut(s) 501
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 486
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 1 cut(s) 486
BpuMI CCSGG 1 cut(s) 486
BsaAI YACGTR 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bse118I RCCGGY 2 cut(s) 220, 465
Bse1I ACTGG 2 cut(s) 252, 259
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 252, 259
BseSI GKGCMC 3 cut(s) 235, 331, 560
BseXI GCAGC 1 cut(s) 413
BsgI GTGCAG 1 cut(s) 420
Bsh1285I CGRYCG 1 cut(s) 212
BshFI GGCC 1 cut(s) 549
BshNI GGYRCC 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 235, 331
BsiSI CCGG 3 cut(s) 221, 466, 485
BslFI GGGAC 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 1 cut(s) 549
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 3 cut(s) 235, 331, 560
Bsp143I GATC 2 cut(s) 73, 97
BspACI CCGC 4 cut(s) 140, 173, 345, 482
BspANI GGCC 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 497
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 2 cut(s) 220, 465
BsrI ACTGG 2 cut(s) 252, 259
BssAI RCCGGY 2 cut(s) 220, 465
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 2 cut(s) 73, 97
BssNI GRCGYC 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 498
BstBAI YACGTR 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 389
BstDSI CCRYGG 1 cut(s) 206
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 2 cut(s) 76, 100
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 2 cut(s) 73, 97
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 4 cut(s) 11, 139, 187, 555
BstNSI RCATGY 1 cut(s) 391
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 460
BstSLI GKGCMC 3 cut(s) 235, 331, 560
BstV1I GCAGC 1 cut(s) 413
BsuRI GGCC 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 528
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 389
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 2 cut(s) 220, 465
Csp6I GTAC 1 cut(s) 126
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 4 cut(s) 63, 388, 505, 561
CviJI RGCY 7 cut(s) 5, 14, 133, 190, 286, 465, 549
CviKI_1 RGCY 7 cut(s) 5, 14, 133, 190, 286, 465, 549
CviQI GTAC 1 cut(s) 126
DinI GGCGCC 1 cut(s) 499
DpnI GATC 2 cut(s) 75, 99
DpnII GATC 2 cut(s) 73, 97
EaeI YGGCCR 1 cut(s) 547
EciI GGCGGA 1 cut(s) 471
Eco31I GGTCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 324
Eco91I GGTNACC 1 cut(s) 223
EcoO65I GGTNACC 1 cut(s) 223
EgeI GGCGCC 1 cut(s) 499
EheI GGCGCC 1 cut(s) 499
FaeI CATG 4 cut(s) 66, 391, 508, 564
FaqI GGGAC 1 cut(s) 247
FatI CATG 4 cut(s) 62, 387, 504, 560
FauI CCCGC 1 cut(s) 352
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 499
GluI GCNGC 1 cut(s) 402
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 1 cut(s) 549
HapII CCGG 3 cut(s) 221, 466, 485
HhaI GCGC 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 4 cut(s) 66, 391, 508, 564
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HinfI GANTC 1 cut(s) 164
HpaII CCGG 3 cut(s) 221, 466, 485
HphI GGTGA 3 cut(s) 162, 217, 248
Hpy166II GTNNAC 4 cut(s) 107, 119, 233, 329
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 4 cut(s) 107, 119, 233, 329
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 7 cut(s) 233, 329, 387, 401, 411, 438, 471
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 139, 187, 555
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 4 cut(s) 66, 391, 508, 564
HspAI GCGC 1 cut(s) 498
KasI GGCGCC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 2 cut(s) 73, 97
Lsp1109I GCAGC 1 cut(s) 413
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 223, 254
MalI GATC 2 cut(s) 75, 99
MboI GATC 2 cut(s) 73, 97
MboII GAAGA 2 cut(s) 103, 442
MhlI GDGCHC 3 cut(s) 235, 331, 560
Mly113I GGCGCC 1 cut(s) 498
MnlI CCTC 4 cut(s) 43, 226, 322, 399
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 533
MspI CCGG 3 cut(s) 221, 466, 485
MspR9I CCNGG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 297
MwoI GCNNNNNNNGC 4 cut(s) 11, 139, 187, 555
NarI GGCGCC 1 cut(s) 498
NciI CCSGG 1 cut(s) 486
NdeII GATC 2 cut(s) 73, 97
NlaIII CATG 4 cut(s) 66, 391, 508, 564
NlaIV GGNNCC 1 cut(s) 499
NmuCI GTSAC 2 cut(s) 223, 254
NspI RCATGY 1 cut(s) 391
PaeI GCATGC 1 cut(s) 391
PaqCI CACCTGC 1 cut(s) 256
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 403
PluTI GGCGCC 1 cut(s) 501
Ppu21I YACGTR 1 cut(s) 129
PspEI GGTNACC 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 499
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 2 cut(s) 73, 97
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 3 cut(s) 235, 331, 560
SetI ASST 6 cut(s) 16, 131, 163, 230, 250, 410
SfcI CTRYAG 1 cut(s) 460
SfoI GGCGCC 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 533
SphI GCATGC 1 cut(s) 391
SsiI CCGC 4 cut(s) 140, 173, 345, 482
SspDI GGCGCC 1 cut(s) 497
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 484
TaaI ACNGT 1 cut(s) 210
TaiI ACGT 1 cut(s) 131
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 2 cut(s) 223, 254
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 2 cut(s) 223, 254
TspDTI ATGAA 1 cut(s) 467
TspRI CASTG 1 cut(s) 535
VneI GTGCAC 2 cut(s) 231, 327
XceI RCATGY 1 cut(s) 391
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.