Rorug07G0186400

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016379
Physical Location & Seq
Reverse (-)
15692606 .. 15695147
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0186400.1

Sequence Viewer

Length: 777 bp
ATGTCAGAGAGGGGTCTCCGGCGACGATCTCAGGTGACGGGTAGTGGCCGGAGGACCCGGCTTTCGAACGCTTCACCATCGTCGCACCGGAAGACCCCACCAGCTCGGCGATCGCCCAAGCAACGTTCCAAGCCTATAAAGATTCTCAAGCGATGCTCCTCCGAGCCTCTGCTCCGGAGCCCTGTTGCCGATTTCGGCGAGGAGGTGGTGCCGCATGTTGGTTGGGAGTTGAGGTCGGAGCCGGAGGGAGTTCTCTTCCGGCCTCAAACTTGTGTCGACGTTTTTGCGTCGTCTCCGACGTTGATGACGCCCTTCTCTCCCAATAATCATGAGGCATACAAGAAAGATGCAAAGGTGGTCTTGAATGTTTCGGTTGAAGGAAGTCCAGGACCGGTGAGGGCCTTGGTGAAGTTGGGATCTACAGTGGAAGAGACTATCAAGCTTGTTGTAGACAAATATACTAAAGAAGGGAGAACTCCCAAGCTTCTTAAGGATGAGGCATCGTCCTTTGAGTTACACCAGTCCTACTTCAGCCTTCAAAGTTTGGATAAATCAGACTTAATTGGGGATGTTGGTAGCAGAAGCTTCTATCTTCGAAAAAGCAGCAGCAATAATGGAGGATCAAGTACTTCTTTGGAAGTCATTCCTGTGAGAGCAAACTCTCCTCCACCTGCTCTGCGTCCTGGATTGTTACTTCCAAATTTTATTGCTCGTAGACTCCGTAAATTTGTTAGAAGAACTCATAGACTTTGGAAGGTCATAGTCTGTATGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

258

Amino Acids

28.81

Weight (kDa)

10.64

Isoelectric Point (pI)

77.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7054 PF23156 115 - 199 9.5e-34 Domain of unknown function (DUF7054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50190
malus_domestica MD09G1038300.v1.1
prunus_persica Prupe.3G279500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0170451
rosa_laevigata RLG00000002283 RLG00000021958
rosa_multiflora Rmu_sc0000172.1_g000001
rosa_rugosa Rorug07G0186400
rosa_samantha Rh2BG631900 Rh2CG601500 Rh2DG644600 Rh7AG330200 Rh7BG319900 Rh7CG347500
rosa_wichuraiana Rw2G051470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 679
Acc36I ACCTGC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 208
AccI GTMKAC 3 cut(s) 276, 450, 715
AccIII TCCGGA 1 cut(s) 174
AciI CCGC 1 cut(s) 212
AclI AACGTT 1 cut(s) 124
AclWI GGATC 2 cut(s) 424, 628
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 700, 725
AcuI CTGAAG 1 cut(s) 514
AcyI GRCGYC 1 cut(s) 308
AfaI GTAC 1 cut(s) 628
AfiI CCNNNNNNNGG 1 cut(s) 218
AflII CTTAAG 1 cut(s) 488
AgeI ACCGGT 1 cut(s) 391
AgsI TTSAA 3 cut(s) 364, 377, 539
AjnI CCWGG 2 cut(s) 385, 682
AluBI AGCT 4 cut(s) 104, 442, 484, 585
AluI AGCT 4 cut(s) 104, 442, 484, 585
Alw26I GTCTC 3 cut(s) 20, 297, 425
AlwI GGATC 2 cut(s) 424, 628
Aor13HI TCCGGA 1 cut(s) 174
AoxI GGCC 3 cut(s) 46, 260, 399
ApeKI GCWGC 2 cut(s) 603, 606
ApoI RAATTY 2 cut(s) 700, 725
ArsI GACNNNNNNTTYG 2 cut(s) 46, 78
AsiGI ACCGGT 1 cut(s) 391
AsiSI GCGATCGC 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 642
AspS9I GGNCC 3 cut(s) 54, 389, 399
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 4 cut(s) 46, 66, 406, 418
AsuII TTCGAA 2 cut(s) 65, 595
AvaII GGWCC 2 cut(s) 54, 389
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 615, 618
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 2 cut(s) 387, 684
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 3 cut(s) 20, 297, 425
BfmI CTRYAG 1 cut(s) 420
BfrI CTTAAG 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 679
BisI GCNGC 3 cut(s) 212, 604, 607
BlsI GCNGC 3 cut(s) 213, 605, 608
BmcAI AGTACT 1 cut(s) 628
Bme1390I CCNGG 3 cut(s) 58, 387, 684
Bme18I GGWCC 2 cut(s) 54, 389
BmgT120I GGNCC 3 cut(s) 54, 389, 399
BmiI GGNNCC 4 cut(s) 56, 179, 210, 240
BmrFI CCNGG 3 cut(s) 58, 387, 684
BmsI GCATC 3 cut(s) 143, 337, 509
BpiI GAAGAC 1 cut(s) 98
Bpu14I TTCGAA 2 cut(s) 65, 595
BpuEI CTTGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 402
BsaWI WCCGGW 3 cut(s) 87, 174, 391
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 520
BseAI TCCGGA 1 cut(s) 174
BseBI CCWGG 2 cut(s) 387, 684
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 2 cut(s) 499, 574
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 3 cut(s) 148, 215, 654
BseXI GCAGC 2 cut(s) 615, 618
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 48, 262, 401
BshNI GGYRCC 1 cut(s) 208
BshTI ACCGGT 1 cut(s) 391
BsiEI CGRYCG 1 cut(s) 113
BsiSI CCGG 8 cut(s) 19, 49, 58, 88, 175, 242, 259, 392
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 3 cut(s) 20, 297, 425
BsmBI CGTCTC 1 cut(s) 297
BsnI GGCC 3 cut(s) 48, 262, 401
Bso31I GGTCTC 1 cut(s) 20
Bsp119I TTCGAA 2 cut(s) 65, 595
Bsp1286I GDGCHC 1 cut(s) 182
Bsp13I TCCGGA 1 cut(s) 174
Bsp143I GATC 4 cut(s) 26, 110, 416, 620
BspACI CCGC 1 cut(s) 212
BspANI GGCC 3 cut(s) 48, 262, 401
BspCNI CTCAG 1 cut(s) 43
BspEI TCCGGA 1 cut(s) 174
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 4 cut(s) 56, 179, 210, 240
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 2 cut(s) 424, 628
BspT104I TTCGAA 2 cut(s) 65, 595
BspT107I GGYRCC 1 cut(s) 208
BspTI CTTAAG 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 391
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 4 cut(s) 26, 110, 416, 620
BssNI GRCGYC 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 387, 684
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 2 cut(s) 260, 423
BstACI GRCGYC 1 cut(s) 308
BstAFI CTTAAG 1 cut(s) 488
BstBI TTCGAA 2 cut(s) 65, 595
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 2 cut(s) 499, 574
BstKTI GATC 4 cut(s) 29, 113, 419, 623
BstMAI GTCTC 3 cut(s) 20, 297, 425
BstMBI GATC 4 cut(s) 26, 110, 416, 620
BstMCI CGRYCG 1 cut(s) 113
BstNI CCWGG 2 cut(s) 387, 684
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 3 cut(s) 56, 385, 682
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 615, 618
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuRI GGCC 3 cut(s) 48, 262, 401
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 499, 574
BtsIMutI CAGTG 1 cut(s) 429
BveI ACCTGC 1 cut(s) 679
CciI TCATGA 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 3 cut(s) 54, 389, 399
CseI GACGC 3 cut(s) 276, 316, 668
Csp6I GTAC 1 cut(s) 627
CspAI ACCGGT 1 cut(s) 391
CviAII CATG 2 cut(s) 215, 329
CviQI GTAC 1 cut(s) 627
DdeI CTNAG 1 cut(s) 30
DpnI GATC 4 cut(s) 28, 112, 418, 622
DpnII GATC 4 cut(s) 26, 110, 416, 620
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 260, 423
EarI CTCTTC 2 cut(s) 260, 423
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 54, 389
Eco57I CTGAAG 1 cut(s) 514
EcoO109I RGGNCCY 2 cut(s) 54, 399
EcoRII CCWGG 2 cut(s) 385, 682
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 2 cut(s) 218, 332
FaiI YATR 8 cut(s) 137, 216, 330, 337, 459, 744, 761, 770
FalI AAGNNNNNCTT 4 cut(s) 344, 376, 616, 648
FatI CATG 2 cut(s) 214, 328
FblI GTMKAC 3 cut(s) 276, 450, 715
Fnu4HI GCNGC 3 cut(s) 212, 604, 607
FokI GGATG 2 cut(s) 506, 581
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 3 cut(s) 212, 604, 607
GluI GCNGC 3 cut(s) 212, 604, 607
HaeIII GGCC 3 cut(s) 48, 262, 401
HapII CCGG 8 cut(s) 19, 49, 58, 88, 175, 242, 259, 392
HgaI GACGC 3 cut(s) 276, 316, 668
Hin1I GRCGYC 1 cut(s) 308
Hin1II CATG 2 cut(s) 218, 332
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 3 cut(s) 440, 482, 583
HinfI GANTC 2 cut(s) 142, 717
HpaII CCGG 8 cut(s) 19, 49, 58, 88, 175, 242, 259, 392
HphI GGTGA 4 cut(s) 46, 66, 406, 418
Hpy166II GTNNAC 3 cut(s) 277, 451, 716
Hpy188I TCNGA 5 cut(s) 7, 163, 238, 297, 556
Hpy188III TCNNGA 3 cut(s) 175, 329, 361
Hpy8I GTNNAC 3 cut(s) 277, 451, 716
Hpy99I CGWCG 5 cut(s) 27, 85, 281, 292, 301
HpyAV CCTTC 5 cut(s) 322, 371, 461, 545, 748
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 3 cut(s) 124, 279, 299
HpyCH4V TGCA 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 3 cut(s) 124, 279, 299
Hsp92I GRCGYC 1 cut(s) 308
Hsp92II CATG 2 cut(s) 218, 332
Kpn2I TCCGGA 1 cut(s) 174
Kzo9I GATC 4 cut(s) 26, 110, 416, 620
LmnI GCTCC 4 cut(s) 161, 177, 177, 238
Lsp1109I GCAGC 2 cut(s) 615, 618
LweI GCATC 3 cut(s) 143, 337, 509
MaeII ACGT 3 cut(s) 124, 279, 299
MaeIII GTNAC 3 cut(s) 34, 513, 690
MalI GATC 4 cut(s) 28, 112, 418, 622
MboI GATC 4 cut(s) 26, 110, 416, 620
MboII GAAGA 5 cut(s) 103, 247, 440, 584, 747
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 3 cut(s) 561, 700, 725
MlyI GAGTC 1 cut(s) 711
MmeI TCCRAC 2 cut(s) 216, 320
MroI TCCGGA 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 642
MseI TTAA 2 cut(s) 489, 560
MslI CAYNNNNRTG 1 cut(s) 647
MspCI CTTAAG 1 cut(s) 488
MspI CCGG 8 cut(s) 19, 49, 58, 88, 175, 242, 259, 392
MspR9I CCNGG 3 cut(s) 58, 387, 684
MvaI CCWGG 2 cut(s) 387, 684
NciI CCSGG 1 cut(s) 58
NdeII GATC 4 cut(s) 26, 110, 416, 620
NlaIII CATG 2 cut(s) 218, 332
NlaIV GGNNCC 4 cut(s) 56, 179, 210, 240
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 218
NspV TTCGAA 2 cut(s) 65, 595
PagI TCATGA 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 679
PcsI WCGNNNNNNNCGW 2 cut(s) 296, 718
PdmI GAANNNNTTC 1 cut(s) 642
PfeI GAWTC 1 cut(s) 142
PfoI TCCNGGA 2 cut(s) 385, 682
PinAI ACCGGT 1 cut(s) 391
PkrI GCNGC 3 cut(s) 213, 605, 608
Ple19I CGATCG 1 cut(s) 113
PleI GAGTC 1 cut(s) 711
PpsI GAGTC 1 cut(s) 711
PpuMI RGGWCCY 1 cut(s) 54
Psp1406I AACGTT 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 385, 682
PspGI CCWGG 2 cut(s) 385, 682
PspN4I GGNNCC 4 cut(s) 56, 179, 210, 240
PspPI GGNCC 3 cut(s) 54, 389, 399
PspPPI RGGWCCY 1 cut(s) 54
PsuI RGATCY 1 cut(s) 416
PvuI CGATCG 1 cut(s) 113
RgaI GCGATCGC 1 cut(s) 113
RsaI GTAC 1 cut(s) 628
RsaNI GTAC 1 cut(s) 627
RseI CAYNNNNRTG 1 cut(s) 647
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 489, 560
SatI GCNGC 3 cut(s) 212, 604, 607
Sau3AI GATC 4 cut(s) 26, 110, 416, 620
Sau96I GGNCC 3 cut(s) 54, 389, 399
ScaI AGTACT 1 cut(s) 628
SchI GAGTC 1 cut(s) 711
ScrFI CCNGG 3 cut(s) 58, 387, 684
SduI GDGCHC 1 cut(s) 182
SfaAI GCGATCGC 1 cut(s) 113
SfaNI GCATC 3 cut(s) 143, 337, 509
SfcI CTRYAG 1 cut(s) 420
SfuI TTCGAA 2 cut(s) 65, 595
SgfI GCGATCGC 1 cut(s) 113
SinI GGWCC 2 cut(s) 54, 389
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 2 cut(s) 146, 488
SmoI CTYRAG 2 cut(s) 146, 488
Sse9I AATT 3 cut(s) 561, 700, 725
SsiI CCGC 1 cut(s) 212
StyD4I CCNGG 3 cut(s) 56, 385, 682
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 3 cut(s) 127, 282, 302
TaqI TCGA 3 cut(s) 65, 276, 595
TasI AATT 3 cut(s) 561, 700, 725
TatI WGTACW 1 cut(s) 626
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 489, 560
Tru9I TTAA 2 cut(s) 489, 560
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 2 cut(s) 603, 606
Tsp45I GTSAC 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 1 cut(s) 429
Vha464I CTTAAG 1 cut(s) 488
VpaK11BI GGWCC 2 cut(s) 54, 389
XapI RAATTY 2 cut(s) 700, 725
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 3 cut(s) 276, 450, 715
XmnI GAANNNNTTC 1 cut(s) 642
ZrmI AGTACT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.