MD09G1038300.v1.1

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016379
Physical Location & Seq
Forward (+)
2333489 .. 2334995
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1038300.v1.1.491

Sequence Viewer

Length: 465 bp
ATGGATTTCAAAGCTGTGATCCTTCTGTTTGCCTCCATTCTCTTACTTACTACAAAGGTCTCATCTACTCATGATCAGGAACTCAAGATAAAGAATCAGAGTGAACGCCGTAGTTTATTTAATATTTGGATATATCCACGCATTCCATTTTGGAGCCCAGCATTCAGGGATCCATATCAACCAAAACGTCCACTGTATAAACCGGAGGCTCCCATAGTAATGGAGGCCACGCCACCCACTTCCGATGCAACTCCACCACCATCGGCGAATACCAGCTCAGATTGCTTCAAGTTGTGTGACGTGAGGTGCAAAATCGAAAAGAACAAGAAGATCTGCAGGAAATCGTGCATGTTATGCTGTGCCCGCTGCAAATGTGTTCCGCCGGGAGACTACGGCACCAACATGGACAAGTGTGGCAAATGCTATAGTACTGATATACAGTATCACGGACACAAGTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

155

Amino Acids

17.56

Weight (kDa)

9.09

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 94 - 154 6e-13 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50190
malus_domestica MD09G1038300.v1.1
prunus_persica Prupe.3G279500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0170451
rosa_laevigata RLG00000002283 RLG00000021958
rosa_multiflora Rmu_sc0000172.1_g000001
rosa_rugosa Rorug07G0186400
rosa_samantha Rh2BG631900 Rh2CG601500 Rh2DG644600 Rh7AG330200 Rh7BG319900 Rh7CG347500
rosa_wichuraiana Rw2G051470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AciI CCGC 2 cut(s) 364, 380
AclWI GGATC 3 cut(s) 13, 164, 177
AfaI GTAC 1 cut(s) 430
AgsI TTSAA 2 cut(s) 10, 289
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 2 cut(s) 14, 276
AluI AGCT 2 cut(s) 14, 276
Alw26I GTCTC 2 cut(s) 64, 381
AlwI GGATC 3 cut(s) 13, 164, 177
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 366
AsuC2I CCSGG 1 cut(s) 384
BaeGI GKGCMC 2 cut(s) 364, 461
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 353
BccI CCATC 1 cut(s) 268
BceAI ACGGC 2 cut(s) 93, 409
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 64, 381
BfmI CTRYAG 2 cut(s) 334, 424
BglII AGATCT 1 cut(s) 330
BisI GCNGC 1 cut(s) 367
BlsI GCNGC 1 cut(s) 368
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 384
BmgBI CACGTC 1 cut(s) 301
BmiI GGNNCC 4 cut(s) 155, 171, 210, 397
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 174
BseMII CTCAG 1 cut(s) 291
BseSI GKGCMC 2 cut(s) 364, 461
BseXI GCAGC 1 cut(s) 353
BseYI CCCAGC 1 cut(s) 157
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 395
BsiSI CCGG 2 cut(s) 203, 383
BsmAI GTCTC 2 cut(s) 64, 381
BsmI GAATGC 2 cut(s) 141, 161
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 3 cut(s) 158, 364, 461
Bsp143I GATC 4 cut(s) 18, 73, 169, 330
BspACI CCGC 2 cut(s) 364, 380
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 290
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 4 cut(s) 155, 171, 210, 397
BspMAI CTGCAG 1 cut(s) 338
BspPI GGATC 3 cut(s) 13, 164, 177
BspT107I GGYRCC 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 64
BssMI GATC 4 cut(s) 18, 73, 169, 330
Bst4CI ACNGT 2 cut(s) 195, 441
BstAPI GCANNNNNTGC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 277
BstKTI GATC 4 cut(s) 21, 76, 172, 333
BstMAI GTCTC 2 cut(s) 64, 381
BstMBI GATC 4 cut(s) 18, 73, 169, 330
BstMWI GCNNNNNNNGC 3 cut(s) 282, 354, 363
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 2 cut(s) 334, 424
BstSLI GKGCMC 2 cut(s) 364, 461
BstV1I GCAGC 1 cut(s) 353
BstX2I RGATCY 2 cut(s) 169, 330
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 2 cut(s) 169, 330
BsuRI GGCC 1 cut(s) 227
BtrI CACGTC 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 364
CciI TCATGA 1 cut(s) 70
Csp6I GTAC 1 cut(s) 429
CviAII CATG 3 cut(s) 71, 349, 403
CviJI RGCY 5 cut(s) 14, 156, 209, 227, 276
CviKI_1 RGCY 5 cut(s) 14, 156, 209, 227, 276
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 1 cut(s) 277
DpnI GATC 4 cut(s) 20, 75, 171, 332
DpnII GATC 4 cut(s) 18, 73, 169, 330
EciI GGCGGA 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 3 cut(s) 74, 352, 406
FatI CATG 3 cut(s) 70, 348, 402
FauI CCCGC 1 cut(s) 371
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 367
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 367
GluI GCNGC 1 cut(s) 367
GsaI CCCAGC 1 cut(s) 161
HaeIII GGCC 1 cut(s) 227
HapII CCGG 2 cut(s) 203, 383
Hin1II CATG 3 cut(s) 74, 352, 406
HinfI GANTC 1 cut(s) 94
HpaII CCGG 2 cut(s) 203, 383
Hpy166II GTNNAC 2 cut(s) 104, 191
Hpy188I TCNGA 3 cut(s) 99, 244, 280
Hpy188III TCNNGA 3 cut(s) 71, 77, 85
Hpy8I GTNNAC 2 cut(s) 104, 191
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 195, 441
HpyCH4IV ACGT 2 cut(s) 187, 300
HpyCH4V TGCA 5 cut(s) 248, 309, 336, 348, 369
HpyF10VI GCNNNNNNNGC 3 cut(s) 282, 354, 363
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 2 cut(s) 187, 300
Hsp92II CATG 3 cut(s) 74, 352, 406
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 4 cut(s) 18, 73, 169, 330
LmnI GCTCC 2 cut(s) 153, 214
LpnPI CCDG 7 cut(s) 62, 151, 171, 216, 286, 322, 396
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 1 cut(s) 235
MaeII ACGT 2 cut(s) 187, 300
MaeIII GTNAC 1 cut(s) 296
MalI GATC 4 cut(s) 20, 75, 171, 332
MboI GATC 4 cut(s) 18, 73, 169, 330
MboII GAAGA 1 cut(s) 340
MflI RGATCY 2 cut(s) 169, 330
MhlI GDGCHC 3 cut(s) 158, 364, 461
MnlI CCTC 4 cut(s) 43, 199, 217, 297
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 2 cut(s) 218, 401
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 2 cut(s) 203, 383
MspR9I CCNGG 1 cut(s) 384
Mva1269I GAATGC 2 cut(s) 141, 161
MwoI GCNNNNNNNGC 3 cut(s) 282, 354, 363
NciI CCSGG 1 cut(s) 384
NdeII GATC 4 cut(s) 18, 73, 169, 330
NlaIII CATG 3 cut(s) 74, 352, 406
NlaIV GGNNCC 4 cut(s) 155, 171, 210, 397
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 352
PagI TCATGA 1 cut(s) 70
PctI GAATGC 2 cut(s) 141, 161
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 368
PspFI CCCAGC 1 cut(s) 157
PspN4I GGNNCC 4 cut(s) 155, 171, 210, 397
PstI CTGCAG 1 cut(s) 338
PsuI RGATCY 2 cut(s) 169, 330
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
RseI CAYNNNNRTG 2 cut(s) 218, 401
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 4 cut(s) 18, 73, 169, 330
ScaI AGTACT 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 3 cut(s) 158, 364, 461
SetI ASST 6 cut(s) 16, 60, 190, 278, 303, 308
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 2 cut(s) 334, 424
SmiMI CAYNNNNRTG 2 cut(s) 218, 401
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SsiI CCGC 2 cut(s) 364, 380
SspI AATATT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 195, 441
TaiI ACGT 2 cut(s) 190, 303
TaqI TCGA 1 cut(s) 315
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 198
XceI RCATGY 1 cut(s) 352
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.