FvH4_6g51790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014257
Physical Location & Seq
Forward (+)
38325640 .. 38326888
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51790.t1

Sequence Viewer

Length: 570 bp
ATGGAGTCAACGTCATCCGCGGCCTTCCAAAACGACGACGTATGGGAGCTCCGCCGCGACGAAGACGGCTTCGTCTACAAGCGCAACAAGTACAACAAGAAGAAGCGCCGCCTCGACGACGACGCCCCACCGCCTCCGTCCTCCGCCGCGGATCTCCCGGACGCCGCCGCCGAGGCCCGCCGGAGAGAGTGGAGGGAGGAGGCTCTGCTGAAGCTGAAGACTAAGTACCAGACCGAGATTGAGCACTGGGAGCTTTTATCGAACAGGTTGAAGGAAATGGAGGAGATGACGAGCCAGATTCAACGCCGAAGATTAGAGCAGCGTGAACGAGACCAAACGGCGTCGTTTGATAGTTCTGCCGTCGCAGGGAATCGGTGCTCGGAGGCGGTTCTGGACGAGCTGCTCTTGCAGGCCGAAGCGCAGGAATCGATCATTGCTGAGGTTTCGAGCTTGTGTGACACCGTGGAAGCAATGTGTCGCGCCGAAGAGGAAGATTTTGCTCAGTCTTTGATCGATCTTCCAATCTGGGGTTCACCGTGCGAGCTCATGAGATCGCTCTGTGACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.82

Weight (kDa)

4.64

Isoelectric Point (pI)

71.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27520
fragaria_vesca FvH4_6g51790
malus_domestica MD09G1022900.v1.1 MD17G1022200.v1.1
prunus_persica Prupe.3G293900_v2.0.a1
pyrus_communis pycom111g01920
rosa_chinensis RchiOBHm_Chr2g0173291
rosa_laevigata RLG00000022177
rosa_multiflora Rmu_sc0010961.1_g000006 Rmu_sc0033776.1_g000004
rosa_roxburghii Rroxscaffold_2G00079070
rosa_rugosa Rorug02G0567100.1
rosa_samantha Rh2AG647500 Rh2BG658000 Rh2CG623400 Rh2DG671800
rosa_wichuraiana Rw2G053150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 75
AccII CGCG 4 cut(s) 20, 57, 149, 480
AclWI GGATC 1 cut(s) 159
AcuI CTGAAG 2 cut(s) 230, 236
AcyI GRCGYC 3 cut(s) 123, 162, 341
AfaI GTAC 2 cut(s) 92, 227
AfiI CCNNNNNNNGG 2 cut(s) 366, 527
AgsI TTSAA 2 cut(s) 271, 302
AjuI GAANNNNNNNTTGG 2 cut(s) 514, 546
AluBI AGCT 6 cut(s) 49, 214, 253, 400, 450, 544
AluI AGCT 6 cut(s) 49, 214, 253, 400, 450, 544
Alw21I GWGCWC 4 cut(s) 51, 246, 380, 546
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 1 cut(s) 159
AoxI GGCC 3 cut(s) 21, 174, 411
ApeKI GCWGC 2 cut(s) 319, 400
AspLEI GCGC 4 cut(s) 84, 108, 421, 482
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 525
BanII GRGCYC 2 cut(s) 51, 546
BarI GAAGNNNNNNTAC 2 cut(s) 209, 241
BbsI GAAGAC 2 cut(s) 69, 224
Bbv12I GWGCWC 4 cut(s) 51, 246, 380, 546
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 331, 387
BceAI ACGGC 3 cut(s) 82, 344, 354
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 109
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 8 cut(s) 21, 55, 109, 147, 165, 168, 320, 401
BlsI GCNGC 8 cut(s) 22, 56, 110, 148, 166, 169, 321, 402
Bme1390I CCNGG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 256
BpiI GAAGAC 2 cut(s) 69, 224
Bpu10I CCTNAGC 1 cut(s) 438
BpuMI CCSGG 1 cut(s) 158
Bsa29I ATCGAT 2 cut(s) 428, 513
BsaHI GRCGYC 3 cut(s) 123, 162, 341
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 4 cut(s) 18, 147, 171, 462
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 527
Bse1I ACTGG 1 cut(s) 251
Bse3DI GCAATG 2 cut(s) 432, 477
BseCI ATCGAT 2 cut(s) 428, 513
BseDI CCNNGG 4 cut(s) 18, 147, 171, 462
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 366, 527
BseMI GCAATG 2 cut(s) 432, 477
BseMII CTCAG 2 cut(s) 429, 515
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 212, 296
BseXI GCAGC 2 cut(s) 331, 387
Bsh1236I CGCG 4 cut(s) 20, 57, 149, 480
BshFI GGCC 3 cut(s) 23, 176, 413
BshVI ATCGAT 2 cut(s) 428, 513
BsiHKAI GWGCWC 4 cut(s) 51, 246, 380, 546
BsiSI CCGG 2 cut(s) 158, 181
BslI CCNNNNNNNGG 2 cut(s) 366, 527
BsmAI GTCTC 1 cut(s) 324
BsnI GGCC 3 cut(s) 23, 176, 413
Bso31I GGTCTC 1 cut(s) 324
Bsp1286I GDGCHC 4 cut(s) 51, 246, 380, 546
Bsp143I GATC 5 cut(s) 151, 429, 510, 514, 551
BspANI GGCC 3 cut(s) 23, 176, 413
BspCNI CTCAG 2 cut(s) 430, 514
BspDI ATCGAT 2 cut(s) 428, 513
BspFNI CGCG 4 cut(s) 20, 57, 149, 480
BspHI TCATGA 1 cut(s) 546
BspPI GGATC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 2 cut(s) 432, 477
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 4 cut(s) 18, 147, 171, 462
BssMI GATC 5 cut(s) 151, 429, 510, 514, 551
BssNI GRCGYC 3 cut(s) 123, 162, 341
Bst4CI ACNGT 2 cut(s) 463, 537
Bst6I CTCTTC 1 cut(s) 480
BstACI GRCGYC 3 cut(s) 123, 162, 341
BstC8I GCNNGC 3 cut(s) 178, 411, 542
BstDEI CTNAG 3 cut(s) 222, 438, 501
BstDSI CCRYGG 3 cut(s) 18, 147, 462
BstF5I GGATG 1 cut(s) 14
BstFNI CGCG 4 cut(s) 20, 57, 149, 480
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 4 cut(s) 84, 108, 421, 482
BstKTI GATC 5 cut(s) 154, 432, 513, 517, 554
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 5 cut(s) 151, 429, 510, 514, 551
BstMWI GCNNNNNNNGC 3 cut(s) 173, 250, 406
BstSCI CCNGG 1 cut(s) 156
BstUI CGCG 4 cut(s) 20, 57, 149, 480
BstV1I GCAGC 2 cut(s) 331, 387
BstV2I GAAGAC 2 cut(s) 69, 224
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
Bsu15I ATCGAT 2 cut(s) 428, 513
BsuRI GGCC 3 cut(s) 23, 176, 413
BsuTUI ATCGAT 2 cut(s) 428, 513
BtgI CCRYGG 3 cut(s) 18, 147, 462
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 3 cut(s) 178, 411, 542
CciI TCATGA 1 cut(s) 546
CfoI GCGC 4 cut(s) 84, 108, 421, 482
Cfr13I GGNCC 1 cut(s) 175
Cfr42I CCGCGG 2 cut(s) 21, 150
ClaI ATCGAT 2 cut(s) 428, 513
CseI GACGC 3 cut(s) 131, 170, 330
Csp6I GTAC 2 cut(s) 91, 226
CviAII CATG 1 cut(s) 547
CviQI GTAC 2 cut(s) 91, 226
DdeI CTNAG 3 cut(s) 222, 438, 501
DpnI GATC 5 cut(s) 153, 431, 512, 516, 553
DpnII GATC 5 cut(s) 151, 429, 510, 514, 551
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
EciI GGCGGA 2 cut(s) 41, 133
Ecl136II GAGCTC 2 cut(s) 49, 544
Eco24I GRGCYC 2 cut(s) 51, 546
Eco31I GGTCTC 1 cut(s) 324
Eco53kI GAGCTC 2 cut(s) 49, 544
Eco57I CTGAAG 2 cut(s) 230, 236
EcoICRI GAGCTC 2 cut(s) 49, 544
EcoT38I GRGCYC 2 cut(s) 51, 546
FaeI CATG 1 cut(s) 550
FaiI YATR 2 cut(s) 43, 548
FatI CATG 1 cut(s) 546
FauI CCCGC 1 cut(s) 185
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 8 cut(s) 21, 55, 109, 147, 165, 168, 320, 401
FriOI GRGCYC 2 cut(s) 51, 546
Fsp4HI GCNGC 8 cut(s) 21, 55, 109, 147, 165, 168, 320, 401
GlaI GCGC 4 cut(s) 83, 107, 420, 481
GluI GCNGC 8 cut(s) 21, 55, 109, 147, 165, 168, 320, 401
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 3 cut(s) 23, 176, 413
HapII CCGG 2 cut(s) 158, 181
HgaI GACGC 3 cut(s) 131, 170, 330
HhaI GCGC 4 cut(s) 84, 108, 421, 482
Hin1I GRCGYC 3 cut(s) 123, 162, 341
Hin1II CATG 1 cut(s) 550
Hin6I GCGC 4 cut(s) 82, 106, 419, 480
HinP1I GCGC 4 cut(s) 82, 106, 419, 480
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 4 cut(s) 5, 298, 370, 425
HpaII CCGG 2 cut(s) 158, 181
HphI GGTGA 1 cut(s) 525
Hpy166II GTNNAC 4 cut(s) 9, 76, 326, 533
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 2 cut(s) 392, 547
Hpy8I GTNNAC 4 cut(s) 9, 76, 326, 533
Hpy99I CGWCG 8 cut(s) 38, 41, 62, 119, 122, 125, 346, 365
HpyAV CCTTC 2 cut(s) 34, 265
HpyCH4III ACNGT 2 cut(s) 463, 537
HpyCH4IV ACGT 2 cut(s) 11, 39
HpyCH4V TGCA 1 cut(s) 409
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 250, 406
HpyF3I CTNAG 3 cut(s) 222, 438, 501
HpySE526I ACGT 2 cut(s) 11, 39
Hsp92I GRCGYC 3 cut(s) 123, 162, 341
Hsp92II CATG 1 cut(s) 550
HspAI GCGC 4 cut(s) 82, 106, 419, 480
KspI CCGCGG 2 cut(s) 21, 150
Kzo9I GATC 5 cut(s) 151, 429, 510, 514, 551
LmnI GCTCC 3 cut(s) 46, 54, 250
Lsp1109I GCAGC 2 cut(s) 331, 387
MaeII ACGT 2 cut(s) 11, 39
MaeIII GTNAC 2 cut(s) 455, 560
MalI GATC 5 cut(s) 153, 431, 512, 516, 553
MboI GATC 5 cut(s) 151, 429, 510, 514, 551
MboII GAAGA 7 cut(s) 74, 112, 229, 321, 497, 503, 509
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 4 cut(s) 51, 246, 380, 546
MlyI GAGTC 1 cut(s) 14
MspA1I CMGCKG 2 cut(s) 20, 149
MspI CCGG 2 cut(s) 158, 181
MspR9I CCNGG 1 cut(s) 158
MvnI CGCG 4 cut(s) 20, 57, 149, 480
MwoI GCNNNNNNNGC 3 cut(s) 173, 250, 406
NciI CCSGG 1 cut(s) 158
NdeII GATC 5 cut(s) 151, 429, 510, 514, 551
NlaIII CATG 1 cut(s) 550
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 455, 560
PagI TCATGA 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 3 cut(s) 298, 370, 425
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 8 cut(s) 22, 56, 110, 148, 166, 169, 321, 402
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp124BI GAGCTC 2 cut(s) 51, 546
PspPI GGNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 2 cut(s) 92, 227
RsaNI GTAC 2 cut(s) 91, 226
SacI GAGCTC 2 cut(s) 51, 546
SacII CCGCGG 2 cut(s) 21, 150
SatI GCNGC 8 cut(s) 21, 55, 109, 147, 165, 168, 320, 401
Sau3AI GATC 5 cut(s) 151, 429, 510, 514, 551
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 4 cut(s) 51, 246, 380, 546
Sfr303I CCGCGG 2 cut(s) 21, 150
SgrBI CCGCGG 2 cut(s) 21, 150
SstI GAGCTC 2 cut(s) 51, 546
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 463, 537
TaiI ACGT 2 cut(s) 14, 42
TaqI TCGA 5 cut(s) 114, 260, 428, 446, 513
TaqII GACCGA 1 cut(s) 248
TatI WGTACW 1 cut(s) 90
TauI GCSGC 6 cut(s) 23, 57, 111, 149, 167, 170
TfiI GAWTC 3 cut(s) 298, 370, 425
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 2 cut(s) 455, 560
TseI GCWGC 2 cut(s) 319, 400
Tsp45I GTSAC 2 cut(s) 455, 560
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.