Prupe.3G293900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014257
Physical Location & Seq
Reverse (-)
26247756 .. 26249491
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G293900.1

Sequence Viewer

Length: 600 bp
ATGGTGGAGTCAACACCTTCAGGAGCAGCAGCTTGGGAAGACGACGAAGACTGGGAGCTCGTGAATGAAGACGGCTTCGTTTTCAAGCGCAGGAAGAAGCGCCGGGTCGACCCATCTGCTGACTCGTCGCTCCGGGCTCCACCGTCTGCGTCTGCCGCGGATCTACAGGAGGATGCCGAGAAACTCCGGAGAGAGCGGAAGAAGAAGTCGCTTTTAAAGCTCAAAACTCAGTACCAGGCGGAGATCGACCAGTGGGAACTTTTGTCGAGCACATTGCGCGCAGTGGAAGAGAGGACGTGCCATCTTCAAGAACAACAACAGCAACATCGATTGAACGAGCAAGAACGAGAGAAAACGGCGTCGTTGGCTGGTTCTGGTCCTTCTGAGCTTCAAGGGGCGGAGTCCGTTTGTGGGTCAGTGGTGGATGAGCTTCTCTTGCAGGCAGAAGCCCAGGAAGCTATCATTGGTGATGTTTCGAATCTGTGTGACATAGCGGAAGCAATGTGTAGTGAACAAGAGGAACAGATAACCCAATCTCTACTCGATCTTCCAATCTGGGGCTCACCGCAGGAGCTCATGAATTCACTATGTGACCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.27

Weight (kDa)

4.5

Isoelectric Point (pI)

67.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27520
fragaria_vesca FvH4_6g51790
malus_domestica MD09G1022900.v1.1 MD17G1022200.v1.1
prunus_persica Prupe.3G293900_v2.0.a1
pyrus_communis pycom111g01920
rosa_chinensis RchiOBHm_Chr2g0173291
rosa_laevigata RLG00000022177
rosa_multiflora Rmu_sc0010961.1_g000006 Rmu_sc0033776.1_g000004
rosa_roxburghii Rroxscaffold_2G00079070
rosa_rugosa Rorug02G0567100.1
rosa_samantha Rh2AG647500 Rh2BG658000 Rh2CG623400 Rh2DG671800
rosa_wichuraiana Rw2G053150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 108
AccII CGCG 2 cut(s) 158, 279
AccIII TCCGGA 1 cut(s) 186
AciI CCGC 7 cut(s) 156, 158, 196, 239, 398, 494, 566
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 580
AcyI GRCGYC 1 cut(s) 359
AdeI CACNNNGTG 1 cut(s) 590
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 411, 557
AgsI TTSAA 4 cut(s) 85, 308, 334, 392
AjiI CACGTC 1 cut(s) 297
AjnI CCWGG 2 cut(s) 234, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 7 cut(s) 32, 58, 220, 388, 430, 458, 574
AluI AGCT 7 cut(s) 32, 58, 220, 388, 430, 458, 574
Alw21I GWGCWC 3 cut(s) 60, 272, 576
AlwI GGATC 1 cut(s) 168
Aor13HI TCCGGA 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 26, 29
ApoI RAATTY 1 cut(s) 580
AspLEI GCGC 4 cut(s) 90, 102, 279, 281
AspS9I GGNCC 1 cut(s) 377
AsuC2I CCSGG 2 cut(s) 104, 134
AsuHPI GGTGA 2 cut(s) 479, 555
AsuII TTCGAA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 377
BanII GRGCYC 4 cut(s) 60, 139, 563, 576
BauI CACGAG 1 cut(s) 59
BbsI GAAGAC 3 cut(s) 45, 54, 75
Bbv12I GWGCWC 3 cut(s) 60, 272, 576
BbvI GCAGC 2 cut(s) 38, 41
BccI CCATC 2 cut(s) 121, 309
BceAI ACGGC 2 cut(s) 88, 372
BcgI CGANNNNNNTGC 4 cut(s) 98, 132, 256, 290
BciT130I CCWGG 2 cut(s) 236, 452
BcnI CCSGG 2 cut(s) 104, 134
BfmI CTRYAG 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 3 cut(s) 27, 30, 156
BlsI GCNGC 3 cut(s) 28, 31, 157
Bme1390I CCNGG 4 cut(s) 104, 134, 236, 452
Bme18I GGWCC 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 4 cut(s) 104, 134, 236, 452
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 61
BpiI GAAGAC 3 cut(s) 45, 54, 75
Bpu14I TTCGAA 1 cut(s) 476
BpuMI CCSGG 2 cut(s) 104, 134
Bsa29I ATCGAT 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 156, 450
BsaWI WCCGGW 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 557
Bse1I ACTGG 2 cut(s) 56, 250
Bse3DI GCAATG 2 cut(s) 272, 507
BseAI TCCGGA 1 cut(s) 186
BseBI CCWGG 2 cut(s) 236, 452
BseCI ATCGAT 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 156, 450
BseGI GGATG 2 cut(s) 178, 430
BseLI CCNNNNNNNGG 2 cut(s) 411, 557
BseMI GCAATG 2 cut(s) 272, 507
BseMII CTCAG 2 cut(s) 242, 375
BseNI ACTGG 2 cut(s) 56, 250
BsePI GCGCGC 1 cut(s) 277
BseXI GCAGC 2 cut(s) 38, 41
Bsh1236I CGCG 2 cut(s) 158, 279
BshVI ATCGAT 1 cut(s) 328
BsiHKAI GWGCWC 3 cut(s) 60, 272, 576
BsiSI CCGG 3 cut(s) 103, 133, 187
BslI CCNNNNNNNGG 2 cut(s) 411, 557
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 5 cut(s) 60, 139, 272, 563, 576
Bsp13I TCCGGA 1 cut(s) 186
Bsp143I GATC 3 cut(s) 160, 243, 544
BspACI CCGC 7 cut(s) 156, 158, 196, 239, 398, 494, 566
BspCNI CTCAG 2 cut(s) 241, 376
BspDI ATCGAT 1 cut(s) 328
BspEI TCCGGA 1 cut(s) 186
BspFNI CGCG 2 cut(s) 158, 279
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 476
BsrBI CCGCTC 1 cut(s) 196
BsrDI GCAATG 2 cut(s) 272, 507
BsrI ACTGG 2 cut(s) 56, 250
BssECI CCNNGG 2 cut(s) 156, 450
BssHII GCGCGC 1 cut(s) 277
BssMI GATC 3 cut(s) 160, 243, 544
BssNI GRCGYC 1 cut(s) 359
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 2 cut(s) 236, 452
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 359
BstBI TTCGAA 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 279, 441
BstDEI CTNAG 2 cut(s) 228, 384
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 2 cut(s) 178, 430
BstFNI CGCG 2 cut(s) 158, 279
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 4 cut(s) 90, 102, 279, 281
BstKTI GATC 3 cut(s) 163, 246, 547
BstMBI GATC 3 cut(s) 160, 243, 544
BstMWI GCNNNNNNNGC 6 cut(s) 155, 217, 276, 365, 436, 455
BstNI CCWGG 2 cut(s) 236, 452
BstSCI CCNGG 4 cut(s) 102, 132, 234, 450
BstSFI CTRYAG 1 cut(s) 164
BstUI CGCG 2 cut(s) 158, 279
BstV1I GCAGC 2 cut(s) 38, 41
BstV2I GAAGAC 3 cut(s) 45, 54, 75
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu15I ATCGAT 1 cut(s) 328
BsuTUI ATCGAT 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 156
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 2 cut(s) 178, 430
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 3 cut(s) 257, 288, 423
Cac8I GCNNGC 2 cut(s) 279, 441
CciI TCATGA 1 cut(s) 576
CfoI GCGC 4 cut(s) 90, 102, 279, 281
Cfr13I GGNCC 1 cut(s) 377
Cfr42I CCGCGG 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 328
CseI GACGC 2 cut(s) 138, 348
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 577
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 2 cut(s) 228, 384
DpnI GATC 3 cut(s) 162, 245, 546
DpnII GATC 3 cut(s) 160, 243, 544
DraI TTTAAA 1 cut(s) 216
DraIII CACNNNGTG 1 cut(s) 590
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
EciI GGCGGA 2 cut(s) 254, 413
Ecl136II GAGCTC 2 cut(s) 58, 574
Eco24I GRGCYC 4 cut(s) 60, 139, 563, 576
Eco47I GGWCC 1 cut(s) 377
Eco53kI GAGCTC 2 cut(s) 58, 574
EcoICRI GAGCTC 2 cut(s) 58, 574
EcoRI GAATTC 1 cut(s) 580
EcoRII CCWGG 2 cut(s) 234, 450
EcoT38I GRGCYC 4 cut(s) 60, 139, 563, 576
FaeI CATG 1 cut(s) 580
FaiI YATR 3 cut(s) 491, 578, 589
FatI CATG 1 cut(s) 576
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 27, 30, 156
FokI GGATG 2 cut(s) 185, 437
FriOI GRGCYC 4 cut(s) 60, 139, 563, 576
Fsp4HI GCNGC 3 cut(s) 27, 30, 156
GlaI GCGC 4 cut(s) 89, 101, 278, 280
GluI GCNGC 3 cut(s) 27, 30, 156
HaeII RGCGCY 1 cut(s) 103
HapII CCGG 3 cut(s) 103, 133, 187
HgaI GACGC 2 cut(s) 138, 348
HhaI GCGC 4 cut(s) 90, 102, 279, 281
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 1 cut(s) 580
Hin6I GCGC 4 cut(s) 88, 100, 277, 279
HinP1I GCGC 4 cut(s) 88, 100, 277, 279
HincII GTYRAC 2 cut(s) 12, 109
HindII GTYRAC 2 cut(s) 12, 109
HinfI GANTC 4 cut(s) 8, 122, 401, 478
HpaII CCGG 3 cut(s) 103, 133, 187
HphI GGTGA 2 cut(s) 479, 555
Hpy166II GTNNAC 3 cut(s) 12, 109, 512
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 5 cut(s) 21, 61, 187, 308, 577
Hpy8I GTNNAC 3 cut(s) 12, 109, 512
Hpy99I CGWCG 3 cut(s) 47, 130, 364
HpyAV CCTTC 2 cut(s) 27, 390
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 1 cut(s) 439
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 217, 276, 365, 436, 455
HpyF3I CTNAG 2 cut(s) 228, 384
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 1 cut(s) 580
HspAI GCGC 4 cut(s) 88, 100, 277, 279
Kpn2I TCCGGA 1 cut(s) 186
KspI CCGCGG 1 cut(s) 159
Kzo9I GATC 3 cut(s) 160, 243, 544
LmnI GCTCC 5 cut(s) 23, 55, 135, 142, 571
Lsp1109I GCAGC 2 cut(s) 38, 41
LweI GCATC 1 cut(s) 163
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 485, 590
MalI GATC 3 cut(s) 162, 245, 546
MbiI CCGCTC 1 cut(s) 196
MboI GATC 3 cut(s) 160, 243, 544
MboII GAAGA 9 cut(s) 50, 59, 80, 106, 211, 214, 296, 299, 539
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 5 cut(s) 60, 139, 272, 563, 576
MluCI AATT 1 cut(s) 580
MlyI GAGTC 3 cut(s) 17, 116, 410
MnlI CCTC 3 cut(s) 163, 285, 511
MroI TCCGGA 1 cut(s) 186
MseI TTAA 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 3 cut(s) 103, 133, 187
MspR9I CCNGG 4 cut(s) 104, 134, 236, 452
MvaI CCWGG 2 cut(s) 236, 452
MvnI CGCG 2 cut(s) 158, 279
MwoI GCNNNNNNNGC 6 cut(s) 155, 217, 276, 365, 436, 455
NciI CCSGG 2 cut(s) 104, 134
NdeII GATC 3 cut(s) 160, 243, 544
NlaIII CATG 1 cut(s) 580
NlaIV GGNNCC 1 cut(s) 138
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 485, 590
NspV TTCGAA 1 cut(s) 476
PagI TCATGA 1 cut(s) 576
PauI GCGCGC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 478
PkrI GCNGC 3 cut(s) 28, 31, 157
PleI GAGTC 3 cut(s) 16, 116, 409
PpsI GAGTC 3 cut(s) 16, 116, 409
Psp124BI GAGCTC 2 cut(s) 60, 576
Psp6I CCWGG 2 cut(s) 234, 450
PspGI CCWGG 2 cut(s) 234, 450
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 377
PsuI RGATCY 1 cut(s) 160
PteI GCGCGC 1 cut(s) 277
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SacI GAGCTC 2 cut(s) 60, 576
SacII CCGCGG 1 cut(s) 159
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 3 cut(s) 27, 30, 156
Sau3AI GATC 3 cut(s) 160, 243, 544
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 3 cut(s) 17, 116, 410
ScrFI CCNGG 4 cut(s) 104, 134, 236, 452
SduI GDGCHC 5 cut(s) 60, 139, 272, 563, 576
SetI ASST 9 cut(s) 19, 34, 60, 222, 299, 390, 432, 460, 576
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 164
Sfr303I CCGCGG 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 476
SgrBI CCGCGG 1 cut(s) 159
SinI GGWCC 1 cut(s) 377
Sse9I AATT 1 cut(s) 580
SsiI CCGC 7 cut(s) 156, 158, 196, 239, 398, 494, 566
SstI GAGCTC 2 cut(s) 60, 576
StyD4I CCNGG 4 cut(s) 102, 132, 234, 450
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 1 cut(s) 299
TaqI TCGA 6 cut(s) 108, 246, 266, 328, 476, 543
TasI AATT 1 cut(s) 580
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 3 cut(s) 257, 288, 423
TseFI GTSAC 2 cut(s) 485, 590
TseI GCWGC 2 cut(s) 26, 29
Tsp45I GTSAC 2 cut(s) 485, 590
TspDTI ATGAA 2 cut(s) 81, 593
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 3 cut(s) 257, 288, 423
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.