pycom111g01920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0014257
Physical Location & Seq
Forward (+)
1148841 .. 1149723
883 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01920.2

Sequence Viewer

Length: 579 bp
ATGGAGTCTGCAGTAGCTTGGGTGGACGCCCAAGAGTGGGAGGTCTGCAACGACGACGGCTTCGTCTTCAAGCGGAGGAAGCGGCGCCGGGTCGACGCAGATGCCGACGAGTCAGTCCCGGCTCCACCGTCCTCGGCCGCCGCGGATCTACAGGAGGATCCCCAGAAACTCCGGAGAGAGCGGAGGAGGAAGTTTCTTCTCAAACTCAGAGCTAAGTACCAGGCGGAGATCGACCAGTGGGAACTTCTGTCGAGCACGTTGCGCGCAATGGAGGAGAGGGCGCAGCAACGAGAGGAGGAGCAGCAGCATAGAATGGAAGAGCGAGAACGGGAGGATACGGCGTCGTTGGATGGGTCTGGGGTGTTAGAGATTCAGGGGACGGAGTCCTGTTGTGGGTCGTTGGTGGATGAGCTTCTCTTGCAGGTAGATGCACACGCAGCGATCATTGGTAATGTTTCGAGTCTCTGTGACACAGCGGACGCACTATGTAAGGTAGAAGAGGAACGGATTACTCCGCTTTTCTTCGGTATTCCAATCAGCAGTTCACCGAGGGAGCTCATGAGATCGCTGCAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.95

Weight (kDa)

4.78

Isoelectric Point (pI)

67.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27520
fragaria_vesca FvH4_6g51790
malus_domestica MD09G1022900.v1.1 MD17G1022200.v1.1
prunus_persica Prupe.3G293900_v2.0.a1
pyrus_communis pycom111g01920
rosa_chinensis RchiOBHm_Chr2g0173291
rosa_laevigata RLG00000022177
rosa_multiflora Rmu_sc0010961.1_g000006 Rmu_sc0033776.1_g000004
rosa_roxburghii Rroxscaffold_2G00079070
rosa_rugosa Rorug02G0567100.1
rosa_samantha Rh2AG647500 Rh2BG658000 Rh2CG623400 Rh2DG671800
rosa_wichuraiana Rw2G053150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 62, 113
Acc36I ACCTGC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 84
AccBSI CCGCTC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 93
AccII CGCG 2 cut(s) 143, 264
AccIII TCCGGA 1 cut(s) 171
AciI CCGC 9 cut(s) 73, 82, 138, 141, 143, 181, 224, 476, 515
AclWI GGATC 3 cut(s) 152, 153, 165
AcoI YGGCCR 1 cut(s) 135
AcyI GRCGYC 3 cut(s) 27, 85, 341
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 36, 37, 393
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 526, 558
AluBI AGCT 4 cut(s) 17, 212, 412, 556
AluI AGCT 4 cut(s) 17, 212, 412, 556
Alw21I GWGCWC 2 cut(s) 257, 558
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 3 cut(s) 152, 153, 165
Aor13HI TCCGGA 1 cut(s) 171
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 5 cut(s) 283, 301, 304, 437, 568
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 4 cut(s) 87, 264, 266, 283
AsuC2I CCSGG 2 cut(s) 89, 119
AsuHPI GGTGA 1 cut(s) 537
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 2 cut(s) 257, 558
BbvI GCAGC 5 cut(s) 295, 313, 316, 449, 555
BccI CCATC 1 cut(s) 344
BceAI ACGGC 2 cut(s) 73, 354
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 241, 275
BciT130I CCWGG 1 cut(s) 221
BciVI GTATCC 1 cut(s) 328
BcnI CCSGG 2 cut(s) 89, 119
BcoDI GTCTC 1 cut(s) 467
BfmI CTRYAG 2 cut(s) 9, 149
BfoI RGCGCY 1 cut(s) 88
BfuAI ACCTGC 1 cut(s) 412
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 8 cut(s) 83, 138, 141, 284, 302, 305, 438, 569
BlsI GCNGC 8 cut(s) 84, 139, 142, 285, 303, 306, 439, 570
Bme1390I CCNGG 3 cut(s) 89, 119, 221
BmiI GGNNCC 3 cut(s) 86, 123, 159
BmrFI CCNGG 3 cut(s) 89, 119, 221
BmsI GCATC 2 cut(s) 91, 418
BpiI GAAGAC 1 cut(s) 58
BpuMI CCSGG 2 cut(s) 89, 119
BsaHI GRCGYC 3 cut(s) 27, 85, 341
BsaJI CCNNGG 3 cut(s) 132, 141, 548
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 37, 393
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 2 cut(s) 273, 578
BseAI TCCGGA 1 cut(s) 171
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 3 cut(s) 132, 141, 548
BseGI GGATG 2 cut(s) 355, 412
BseLI CCNNNNNNNGG 3 cut(s) 36, 37, 393
BseMI GCAATG 2 cut(s) 273, 578
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 235
BsePI GCGCGC 1 cut(s) 262
BseRI GAGGAG 4 cut(s) 199, 287, 308, 311
BseX3I CGGCCG 1 cut(s) 135
BseXI GCAGC 5 cut(s) 295, 313, 316, 449, 555
Bsh1236I CGCG 2 cut(s) 143, 264
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 257, 558
BsiSI CCGG 3 cut(s) 88, 119, 172
BslFI GGGAC 2 cut(s) 101, 391
BslI CCNNNNNNNGG 3 cut(s) 36, 37, 393
BsmAI GTCTC 1 cut(s) 467
BsmFI GGGAC 2 cut(s) 101, 391
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 257, 558
Bsp13I TCCGGA 1 cut(s) 171
Bsp143I GATC 5 cut(s) 145, 157, 228, 441, 563
BspACI CCGC 9 cut(s) 73, 82, 138, 141, 143, 181, 224, 476, 515
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 219
BspEI TCCGGA 1 cut(s) 171
BspFNI CGCG 2 cut(s) 143, 264
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 3 cut(s) 86, 123, 159
BspMAI CTGCAG 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 3 cut(s) 152, 153, 165
BspQI GCTCTTC 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 181
BsrDI GCAATG 2 cut(s) 273, 578
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 132, 141, 548
BssHII GCGCGC 1 cut(s) 262
BssMI GATC 5 cut(s) 145, 157, 228, 441, 563
BssNI GRCGYC 3 cut(s) 27, 85, 341
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 2 cut(s) 312, 492
BstACI GRCGYC 3 cut(s) 27, 85, 341
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 206, 213
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 355, 412
BstFNI CGCG 2 cut(s) 143, 264
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 4 cut(s) 87, 264, 266, 283
BstKTI GATC 5 cut(s) 148, 160, 231, 444, 566
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 5 cut(s) 145, 157, 228, 441, 563
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 4 cut(s) 79, 261, 418, 437
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 87, 117, 219
BstSFI CTRYAG 2 cut(s) 9, 149
BstUI CGCG 2 cut(s) 143, 264
BstV1I GCAGC 5 cut(s) 295, 313, 316, 449, 555
BstV2I GAAGAC 1 cut(s) 58
BstX2I RGATCY 2 cut(s) 145, 157
BstYI RGATCY 2 cut(s) 145, 157
BstZI CGGCCG 1 cut(s) 135
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 355, 412
BtsIMutI CAGTG 1 cut(s) 242
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 1 cut(s) 264
CciI TCATGA 1 cut(s) 558
CfoI GCGC 4 cut(s) 87, 264, 266, 283
Cfr42I CCGCGG 1 cut(s) 144
CseI GACGC 4 cut(s) 35, 104, 330, 488
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 559
CviJI RGCY 7 cut(s) 17, 60, 122, 137, 212, 412, 556
CviKI_1 RGCY 7 cut(s) 17, 60, 122, 137, 212, 412, 556
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 206, 213
DinI GGCGCC 1 cut(s) 86
DpnI GATC 5 cut(s) 147, 159, 230, 443, 565
DpnII GATC 5 cut(s) 145, 157, 228, 441, 563
DrdI GACNNNNNNGTC 2 cut(s) 62, 113
DseDI GACNNNNNNGTC 2 cut(s) 62, 113
EaeI YGGCCR 1 cut(s) 135
EagI CGGCCG 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 312, 492
EarI CTCTTC 2 cut(s) 312, 492
EciI GGCGGA 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 556
EclXI CGGCCG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 558
Eco52I CGGCCG 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 556
EcoICRI GAGCTC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 558
EgeI GGCGCC 1 cut(s) 86
EheI GGCGCC 1 cut(s) 86
FaeI CATG 1 cut(s) 562
FaiI YATR 3 cut(s) 309, 487, 560
FaqI GGGAC 2 cut(s) 101, 391
FatI CATG 1 cut(s) 558
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 8 cut(s) 83, 138, 141, 284, 302, 305, 438, 569
FokI GGATG 2 cut(s) 362, 419
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 8 cut(s) 83, 138, 141, 284, 302, 305, 438, 569
GlaI GCGC 4 cut(s) 86, 263, 265, 282
GluI GCNGC 8 cut(s) 83, 138, 141, 284, 302, 305, 438, 569
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 137
HapII CCGG 3 cut(s) 88, 119, 172
HgaI GACGC 4 cut(s) 35, 104, 330, 488
HhaI GCGC 4 cut(s) 87, 264, 266, 283
Hin1I GRCGYC 3 cut(s) 27, 85, 341
Hin1II CATG 1 cut(s) 562
Hin6I GCGC 4 cut(s) 85, 262, 264, 281
HinP1I GCGC 4 cut(s) 85, 262, 264, 281
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 5 cut(s) 5, 110, 370, 383, 460
HpaII CCGG 3 cut(s) 88, 119, 172
HphI GGTGA 1 cut(s) 537
Hpy166II GTNNAC 3 cut(s) 25, 94, 545
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 2 cut(s) 172, 559
Hpy8I GTNNAC 3 cut(s) 25, 94, 545
Hpy99I CGWCG 5 cut(s) 56, 59, 98, 110, 346
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 5 cut(s) 11, 48, 421, 431, 571
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 261, 418, 437
HpyF3I CTNAG 2 cut(s) 206, 213
HpySE526I ACGT 1 cut(s) 257
Hsp92I GRCGYC 3 cut(s) 27, 85, 341
Hsp92II CATG 1 cut(s) 562
HspAI GCGC 4 cut(s) 85, 262, 264, 281
KasI GGCGCC 1 cut(s) 84
Kpn2I TCCGGA 1 cut(s) 171
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 5 cut(s) 145, 157, 228, 441, 563
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 3 cut(s) 127, 298, 553
Lsp1109I GCAGC 5 cut(s) 295, 313, 316, 449, 555
LweI GCATC 2 cut(s) 91, 418
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 467
MalI GATC 5 cut(s) 147, 159, 230, 443, 565
MbiI CCGCTC 1 cut(s) 181
MboI GATC 5 cut(s) 145, 157, 228, 441, 563
MboII GAAGA 5 cut(s) 58, 188, 329, 509, 514
MflI RGATCY 2 cut(s) 145, 157
MhlI GDGCHC 2 cut(s) 257, 558
Mly113I GGCGCC 1 cut(s) 85
MlyI GAGTC 4 cut(s) 14, 119, 392, 469
MmeI TCCRAC 1 cut(s) 327
MroI TCCGGA 1 cut(s) 171
MspA1I CMGCKG 2 cut(s) 143, 476
MspI CCGG 3 cut(s) 88, 119, 172
MspR9I CCNGG 3 cut(s) 89, 119, 221
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 2 cut(s) 143, 264
MwoI GCNNNNNNNGC 4 cut(s) 79, 261, 418, 437
NarI GGCGCC 1 cut(s) 85
NciI CCSGG 2 cut(s) 89, 119
NdeII GATC 5 cut(s) 145, 157, 228, 441, 563
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 3 cut(s) 86, 123, 159
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 467
PagI TCATGA 1 cut(s) 558
PauI GCGCGC 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 312
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 102
PfeI GAWTC 1 cut(s) 370
PflFI GACNNNGTC 1 cut(s) 382
PkrI GCNGC 8 cut(s) 84, 139, 142, 285, 303, 306, 439, 570
PleI GAGTC 4 cut(s) 13, 118, 391, 468
PluTI GGCGCC 1 cut(s) 88
PpsI GAGTC 4 cut(s) 13, 118, 391, 468
Psp124BI GAGCTC 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 3 cut(s) 86, 123, 159
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 2 cut(s) 145, 157
PsyI GACNNNGTC 1 cut(s) 382
PteI GCGCGC 1 cut(s) 262
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SacI GAGCTC 1 cut(s) 558
SacII CCGCGG 1 cut(s) 144
SalI GTCGAC 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 312
SatI GCNGC 8 cut(s) 83, 138, 141, 284, 302, 305, 438, 569
Sau3AI GATC 5 cut(s) 145, 157, 228, 441, 563
SchI GAGTC 4 cut(s) 14, 119, 392, 469
ScrFI CCNGG 3 cut(s) 89, 119, 221
SduI GDGCHC 2 cut(s) 257, 558
SetI ASST 8 cut(s) 19, 45, 214, 260, 414, 426, 495, 558
SfaNI GCATC 2 cut(s) 91, 418
SfcI CTRYAG 2 cut(s) 9, 149
SfoI GGCGCC 1 cut(s) 86
Sfr303I CCGCGG 1 cut(s) 144
SgrBI CCGCGG 1 cut(s) 144
SsiI CCGC 9 cut(s) 73, 82, 138, 141, 143, 181, 224, 476, 515
SspDI GGCGCC 1 cut(s) 84
SstI GAGCTC 1 cut(s) 558
StyD4I CCNGG 3 cut(s) 87, 117, 219
TaaI ACNGT 1 cut(s) 129
TaiI ACGT 1 cut(s) 260
TaqI TCGA 4 cut(s) 93, 231, 251, 458
TauI GCSGC 3 cut(s) 85, 140, 143
TfiI GAWTC 1 cut(s) 370
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 5 cut(s) 283, 301, 304, 437, 568
Tsp45I GTSAC 1 cut(s) 467
TspGWI ACGGA 2 cut(s) 395, 520
TspRI CASTG 1 cut(s) 242
Tth111I GACNNNGTC 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.