FvH4_6g52050

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015187
Physical Location & Seq
Forward (+)
38456873 .. 38458207
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52050.t1

Sequence Viewer

Length: 888 bp
ATGGTCACCATTCATCCAAACCTCAAGCCATGGCATCAGTCCATGACAAGCAACCCGCAGCACTACTCACACACCACTGCCTCTCCTCTATTCACCACCAAACCTCTCATCCCATCTAGAATTTCATGCACTGCTTCATCAGAAAGCAATCAATCTTCCCCTGCAGGCAGAATCAAACGCCTTGTCCTTCCCCAAGAGGGCAGAACCAAACTCAACACTTACCCGGACAGAGATTTCTATGCCTATCCGCGCTTCGTGACCCATGTCGACGATGGCTTCATTTCCACACTGACCAATCTGTATAGAGAAAAGTTGAGACCCGACTCCGAGATCCTTGATCTCATGAGCTCATGGGTTAGTCATTTACCTAAAGAGGTACAGTTTAAGAAAGTCGTGGGACATGGCCTAAATGCGCAAGAGCTTGCTAAGAACCCTAGGCTGGATTACTTCTTCGTCAAGGATCTGAATCAGGATCAGAAGCTTGAGTTGGAAAGCTCTAGTTTTGATGCTGTGTTATGCACCGTTAGCGTTCAGTATCTTCAACAGCCTGAGAAGGTGTTTGCGGAGGTGTTCCGGGTTCTAAGACCGGGAGGGGTGTTCATAGTGAGCTTTAGCAATCGATTGTTCTACGAGAAAGCAATTGGGGCATGGAGAGATGGGAGTGCATACAGCCGGATACAACTAGTAGTGCAATACTTCCAATCTGTAGAAGGGTTCACAAAAGCAGAAATCGTTAAGAAATTACCAGATGCCAATGGTGGTGGTGCTGCAAAGAATAAATCCCCTTTCGGTTGGTTCATGGGTTTGCTTGGATTGATGTCCGGGTCTGATCCCTTCTATGCAGTCTTAGCTTACAAGAACTTCAAACCTGTATATGAAACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

296

Amino Acids

33.41

Weight (kDa)

9.12

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_12 PF08242 138 - 200 6e-07 Methyltransferase domain
Methyltransf_25 PF13649 150 - 198 6.6e-07 Methyltransferase domain
Methyltransf_11 PF08241 151 - 202 6.1e-11 Methyltransferase domain
Methyltransf_31 PF13847 153 - 206 1.5e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01660
fragaria_vesca FvH4_6g52050
malus_domestica MD09G1020500.v1.1
prunus_persica Prupe.3G295700_v2.0.a1
pyrus_communis pycom111g01720
rosa_chinensis RchiOBHm_Chr2g0173561
rosa_laevigata RLG00000022202
rosa_multiflora Rmu_sc0002538.1_g000024 Rmu_sc0029872.1_g000002
rosa_roxburghii Rroxscaffold_2G00078780
rosa_rugosa Rorug02G0571400
rosa_samantha Rh2AG650200 Rh2BG660600 Rh2CG625500 Rh2DG675900
rosa_wichuraiana Rw2G053360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 414
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 250
AciI CCGC 3 cut(s) 56, 248, 563
AclWI GGATC 4 cut(s) 325, 468, 480, 824
AcsI RAATTY 1 cut(s) 120
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 2 cut(s) 197, 439
AgsI TTSAA 2 cut(s) 542, 865
AhlI ACTAGT 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 6 cut(s) 348, 421, 481, 495, 609, 851
AluI AGCT 6 cut(s) 348, 421, 481, 495, 609, 851
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 4 cut(s) 325, 468, 480, 824
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 2 cut(s) 58, 767
ApoI RAATTY 1 cut(s) 120
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
AspA2I CCTAGG 1 cut(s) 434
AspLEI GCGC 2 cut(s) 252, 415
AsuC2I CCSGG 4 cut(s) 224, 575, 588, 823
AsuHPI GGTGA 1 cut(s) 85
AvrII CCTAGG 1 cut(s) 434
BanII GRGCYC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 70, 754
BccI CCATC 3 cut(s) 121, 266, 650
BciVI GTATCC 1 cut(s) 669
BcnI CCSGG 4 cut(s) 224, 575, 588, 823
BcoDI GTCTC 1 cut(s) 310
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 4 cut(s) 117, 435, 498, 683
BfmI CTRYAG 2 cut(s) 162, 705
BfuI GTATCC 1 cut(s) 669
BisI GCNGC 2 cut(s) 59, 768
BlnI CCTAGG 1 cut(s) 434
BlsI GCNGC 2 cut(s) 60, 769
Bme1390I CCNGG 4 cut(s) 224, 575, 588, 823
BmrFI CCNGG 4 cut(s) 224, 575, 588, 823
BmsI GCATC 3 cut(s) 43, 496, 739
BoxI GACNNNNGTC 1 cut(s) 263
BpuEI CTTGAG 2 cut(s) 8, 503
BpuMI CCSGG 4 cut(s) 224, 575, 588, 823
Bsa29I ATCGAT 1 cut(s) 619
BsaBI GATNNNNATC 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 29, 434
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 439
Bse8I GATNNNNATC 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 619
BseDI CCNNGG 2 cut(s) 29, 434
BseGI GGATG 2 cut(s) 13, 108
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 2 cut(s) 197, 439
BseMII CTCAG 1 cut(s) 540
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 70, 754
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 5 cut(s) 224, 574, 587, 673, 822
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 197, 439
BsmAI GTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 1 cut(s) 405
Bso31I GGTCTC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 5 cut(s) 330, 337, 460, 472, 829
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 3 cut(s) 56, 248, 563
BspANI GGCC 1 cut(s) 405
BspCNI CTCAG 1 cut(s) 541
BspDI ATCGAT 1 cut(s) 619
BspFNI CGCG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 342
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 4 cut(s) 325, 468, 480, 824
BspTNI GGTCTC 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 29, 434
BssMI GATC 5 cut(s) 330, 337, 460, 472, 829
BssT1I CCWWGG 2 cut(s) 29, 434
Bst4CI ACNGT 2 cut(s) 381, 523
BstC8I GCNNGC 2 cut(s) 166, 423
BstDEI CTNAG 4 cut(s) 426, 549, 581, 847
BstDSI CCRYGG 1 cut(s) 29
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 13, 108
BstFNI CGCG 1 cut(s) 250
BstHHI GCGC 2 cut(s) 252, 415
BstKTI GATC 5 cut(s) 333, 340, 463, 475, 832
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 5 cut(s) 330, 337, 460, 472, 829
BstMWI GCNNNNNNNGC 3 cut(s) 525, 644, 848
BstPAI GACNNNNGTC 1 cut(s) 263
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 4 cut(s) 222, 573, 586, 821
BstSFI CTRYAG 2 cut(s) 162, 705
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 70, 754
BstX2I RGATCY 2 cut(s) 330, 460
BstYI RGATCY 2 cut(s) 330, 460
Bsu15I ATCGAT 1 cut(s) 619
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 1 cut(s) 405
BsuTUI ATCGAT 1 cut(s) 619
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 2 cut(s) 13, 108
BtsI GCAGTG 2 cut(s) 75, 129
BtsIMutI CAGTG 3 cut(s) 75, 129, 287
Cac8I GCNNGC 2 cut(s) 166, 423
CciI TCATGA 1 cut(s) 342
CfoI GCGC 2 cut(s) 252, 415
ClaI ATCGAT 1 cut(s) 619
Csp6I GTAC 1 cut(s) 377
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviAII CATG 9 cut(s) 30, 43, 126, 263, 343, 351, 401, 648, 799
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 4 cut(s) 426, 549, 581, 847
DpnI GATC 5 cut(s) 332, 339, 462, 474, 831
DpnII GATC 5 cut(s) 330, 337, 460, 472, 829
Ecl136II GAGCTC 1 cut(s) 348
Eco130I CCWWGG 2 cut(s) 29, 434
Eco24I GRGCYC 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 348
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 348
EcoO65I GGTNACC 1 cut(s) 4
EcoT14I CCWWGG 2 cut(s) 29, 434
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 2 cut(s) 29, 434
FaeI CATG 9 cut(s) 33, 46, 129, 266, 346, 354, 404, 651, 802
FaqI GGGAC 1 cut(s) 411
FatI CATG 9 cut(s) 29, 42, 125, 262, 342, 350, 400, 647, 798
FauI CCCGC 1 cut(s) 63
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 59, 768
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 2 cut(s) 59, 768
FspBI CTAG 4 cut(s) 117, 435, 498, 683
FspI TGCGCA 1 cut(s) 414
GlaI GCGC 2 cut(s) 251, 414
GluI GCNGC 2 cut(s) 59, 768
HaeIII GGCC 1 cut(s) 405
HapII CCGG 5 cut(s) 224, 574, 587, 673, 822
HhaI GCGC 2 cut(s) 252, 415
Hin1II CATG 9 cut(s) 33, 46, 129, 266, 346, 354, 404, 651, 802
Hin6I GCGC 2 cut(s) 250, 413
HinP1I GCGC 2 cut(s) 250, 413
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 3 cut(s) 171, 323, 466
HpaII CCGG 5 cut(s) 224, 574, 587, 673, 822
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 268, 717
Hpy188I TCNGA 5 cut(s) 142, 328, 465, 477, 829
Hpy188III TCNNGA 4 cut(s) 117, 256, 343, 470
Hpy8I GTNNAC 2 cut(s) 268, 717
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 4 cut(s) 197, 547, 704, 844
HpyCH4III ACNGT 2 cut(s) 381, 523
HpyCH4V TGCA 7 cut(s) 129, 164, 519, 665, 691, 770, 842
HpyF10VI GCNNNNNNNGC 3 cut(s) 525, 644, 848
HpyF3I CTNAG 4 cut(s) 426, 549, 581, 847
Hsp92II CATG 9 cut(s) 33, 46, 129, 266, 346, 354, 404, 651, 802
HspAI GCGC 2 cut(s) 250, 413
Kzo9I GATC 5 cut(s) 330, 337, 460, 472, 829
Lsp1109I GCAGC 2 cut(s) 70, 754
LweI GCATC 3 cut(s) 43, 496, 739
MaeI CTAG 4 cut(s) 117, 435, 498, 683
MaeIII GTNAC 2 cut(s) 4, 256
MalI GATC 5 cut(s) 332, 339, 462, 474, 831
MboI GATC 5 cut(s) 330, 337, 460, 472, 829
MboII GAAGA 3 cut(s) 147, 442, 530
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 2 cut(s) 330, 460
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 3 cut(s) 120, 639, 740
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 8 cut(s) 32, 91, 96, 114, 190, 367, 559, 584
MseI TTAA 2 cut(s) 384, 735
MspI CCGG 5 cut(s) 224, 574, 587, 673, 822
MspR9I CCNGG 4 cut(s) 224, 575, 588, 823
MunI CAATTG 1 cut(s) 639
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 3 cut(s) 525, 644, 848
NciI CCSGG 4 cut(s) 224, 575, 588, 823
NcoI CCATGG 1 cut(s) 29
NdeII GATC 5 cut(s) 330, 337, 460, 472, 829
NlaIII CATG 9 cut(s) 33, 46, 129, 266, 346, 354, 404, 651, 802
NmuCI GTSAC 2 cut(s) 4, 256
NsbI TGCGCA 1 cut(s) 414
PagI TCATGA 1 cut(s) 342
PfeI GAWTC 2 cut(s) 171, 466
PkrI GCNGC 2 cut(s) 60, 769
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 350
PspEI GGTNACC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 166
PsuI RGATCY 2 cut(s) 330, 460
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SacI GAGCTC 1 cut(s) 350
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 384, 735
SatI GCNGC 2 cut(s) 59, 768
Sau3AI GATC 5 cut(s) 330, 337, 460, 472, 829
SbfI CCTGCAGG 1 cut(s) 166
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 4 cut(s) 224, 575, 588, 823
SdaI CCTGCAGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 3 cut(s) 43, 496, 739
SfcI CTRYAG 2 cut(s) 162, 705
SmlI CTYRAG 2 cut(s) 23, 482
SmoI CTYRAG 2 cut(s) 23, 482
SpeI ACTAGT 1 cut(s) 682
Sse8387I CCTGCAGG 1 cut(s) 166
Sse9I AATT 3 cut(s) 120, 639, 740
SsiI CCGC 3 cut(s) 56, 248, 563
SspMI CTAG 4 cut(s) 117, 435, 498, 683
SstI GAGCTC 1 cut(s) 350
StyD4I CCNGG 4 cut(s) 222, 573, 586, 821
StyI CCWWGG 2 cut(s) 29, 434
TaaI ACNGT 2 cut(s) 381, 523
TaqI TCGA 2 cut(s) 267, 619
TasI AATT 3 cut(s) 120, 639, 740
TfiI GAWTC 2 cut(s) 171, 466
Tru1I TTAA 2 cut(s) 384, 735
Tru9I TTAA 2 cut(s) 384, 735
TscAI CASTG 3 cut(s) 82, 136, 294
TseFI GTSAC 2 cut(s) 4, 256
TseI GCWGC 2 cut(s) 58, 767
Tsp45I GTSAC 2 cut(s) 4, 256
TspDTI ATGAA 5 cut(s) 114, 126, 268, 589, 787
TspRI CASTG 3 cut(s) 82, 136, 294
XapI RAATTY 1 cut(s) 120
XbaI TCTAGA 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XmaJI CCTAGG 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 4 cut(s) 117, 435, 498, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.