RchiOBHm_Chr2g0173561

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015187
Physical Location & Seq
Forward (+)
86515510 .. 86516920
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54077

Sequence Viewer

Length: 876 bp
ATGGTCACCATTCGTCCAAACCTCAAGCCATGGCATCAGTCCATGACAAGCAATCAGCAGTGCTACTCACACACCACCCTCTCTCCTCTATGCACCACCAAACCATCAACAATTTCATGCACTGCTTCATCAGAAAGCAATCAATCTTCCCCAGCAGGCAGAATCAAACGCCTTGTTCTTCCCCAAGAGGGCAGAACCAAACTCAACACTTACCCTGACAGAGATTTCTATGCCTATCCGCGCTTCGTGACACATGTCGACGATGGCTTCATTTCCACATTGACCAATCTGTATAGAGAAAAGTTGAGACCCGACTCAGAGGTTCTTGATCTCATGAGCTCATGGGTTAGTCACTTGCCGAAAGAGGTACAGTATAAGAAAGTGGTGGGACATGGGCTAAATGCACAAGAGCTTGCCAAGAACCGGCTGGATTACTTTTTTGTCAAGGATCTGAATCAGGATCAGAAGCTTGAGTTGGAAAGCTCTAGTTTTGATGCTGTGTTGTGCACGGTTAGCGTTCAGTATCTTCAACAACCTGAGAAGGTGTTTGCGGAGGTGTTCCGGGTTTTAAGACCAGGAGGGGTGTTCATAGTGAGCTTTAGCAATCGATTGTTTTACGAGAAAGCAATTGGAGCATGGAGAGATGGGAGTGCATACAGCCGGATACAATTAGTAGTGCAATACTTCCAATCTGTGGAAGGGTTCACAAAAGCTGAAATCGTTAAGAAATTACCCGATGCCAGTGGTGGTGGTGCTGCAGAGAATAAATCACCATTCAGTTGGTTCATGGGTTTGCTTGGATTGCTGTCCGGGTCTGATCCCTTCTATGCAGTCTTAGCTTACAAGAACTTCAAACCTGTATACGAAACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

291

Amino Acids

32.93

Weight (kDa)

8.72

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_25 PF13649 126 - 194 4e-07 Methyltransferase domain
Methyltransf_12 PF08242 134 - 196 5.4e-07 Methyltransferase domain
Methyltransf_31 PF13847 149 - 202 1.6e-06 Methyltransferase domain
Methyltransf_11 PF08241 152 - 198 4.8e-11 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01660
fragaria_vesca FvH4_6g52050
malus_domestica MD09G1020500.v1.1
prunus_persica Prupe.3G295700_v2.0.a1
pyrus_communis pycom111g01720
rosa_chinensis RchiOBHm_Chr2g0173561
rosa_laevigata RLG00000022202
rosa_multiflora Rmu_sc0002538.1_g000024 Rmu_sc0029872.1_g000002
rosa_roxburghii Rroxscaffold_2G00078780
rosa_rugosa Rorug02G0571400
rosa_samantha Rh2AG650200 Rh2BG660600 Rh2CG625500 Rh2DG675900
rosa_wichuraiana Rw2G053360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 694
AccI GTMKAC 2 cut(s) 258, 861
AccII CGCG 1 cut(s) 241
AciI CCGC 2 cut(s) 239, 551
AclWI GGATC 3 cut(s) 456, 468, 812
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 3 cut(s) 188, 423, 694
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 2 cut(s) 530, 853
AjnI CCWGG 1 cut(s) 574
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 7 cut(s) 339, 412, 469, 483, 597, 713, 839
AluI AGCT 7 cut(s) 339, 412, 469, 483, 597, 713, 839
Alw21I GWGCWC 2 cut(s) 341, 509
Alw26I GTCTC 1 cut(s) 301
Alw44I GTGCAC 1 cut(s) 505
AlwI GGATC 3 cut(s) 456, 468, 812
ApaLI GTGCAC 1 cut(s) 505
ApeKI GCWGC 1 cut(s) 755
AspLEI GCGC 1 cut(s) 243
AsuC2I CCSGG 2 cut(s) 563, 811
AsuHPI GGTGA 1 cut(s) 762
BaeGI GKGCMC 1 cut(s) 509
BanII GRGCYC 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 341, 509
BbvI GCAGC 1 cut(s) 742
BccI CCATC 3 cut(s) 112, 257, 638
BciT130I CCWGG 1 cut(s) 576
BciVI GTATCC 1 cut(s) 657
BcnI CCSGG 2 cut(s) 563, 811
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 756
BfuI GTATCC 1 cut(s) 657
BisI GCNGC 1 cut(s) 756
BlsI GCNGC 1 cut(s) 757
Bme1390I CCNGG 3 cut(s) 563, 576, 811
BmrFI CCNGG 3 cut(s) 563, 576, 811
BmsI GCATC 3 cut(s) 43, 484, 727
BoxI GACNNNNGTC 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 8, 491
BpuMI CCSGG 2 cut(s) 563, 811
Bsa29I ATCGAT 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 453
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 423, 694
Bse118I RCCGGY 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 741
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 1 cut(s) 576
BseCI ATCGAT 1 cut(s) 607
BseDI CCNNGG 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 3 cut(s) 188, 423, 694
BseMII CTCAG 2 cut(s) 330, 528
BseNI ACTGG 1 cut(s) 741
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 1 cut(s) 742
BseYI CCCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 607
BsiHKAI GWGCWC 2 cut(s) 341, 509
BsiSI CCGG 4 cut(s) 424, 562, 661, 810
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 3 cut(s) 188, 423, 694
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 301
Bsp1286I GDGCHC 2 cut(s) 341, 509
Bsp143I GATC 4 cut(s) 328, 448, 460, 817
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 2 cut(s) 239, 551
BspCNI CTCAG 2 cut(s) 329, 529
BspDI ATCGAT 1 cut(s) 607
BspFNI CGCG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 333
BspMAI CTGCAG 1 cut(s) 760
BspPI GGATC 3 cut(s) 456, 468, 812
BspTNI GGTCTC 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 423
BsrI ACTGG 1 cut(s) 741
BssAI RCCGGY 1 cut(s) 423
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 4 cut(s) 328, 448, 460, 817
BssNAI GTATAC 1 cut(s) 862
BssT1I CCWWGG 1 cut(s) 29
Bst1107I GTATAC 1 cut(s) 862
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 2 cut(s) 372, 511
BstC8I GCNNGC 2 cut(s) 157, 414
BstDEI CTNAG 3 cut(s) 316, 537, 835
BstDSI CCRYGG 1 cut(s) 29
BstEII GGTNACC 1 cut(s) 4
BstFNI CGCG 1 cut(s) 241
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 4 cut(s) 331, 451, 463, 820
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 4 cut(s) 328, 448, 460, 817
BstMWI GCNNNNNNNGC 4 cut(s) 513, 632, 802, 836
BstNI CCWGG 1 cut(s) 576
BstNSI RCATGY 1 cut(s) 257
BstPAI GACNNNNGTC 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 3 cut(s) 561, 574, 809
BstSFI CTRYAG 1 cut(s) 756
BstSLI GKGCMC 1 cut(s) 509
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 742
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 780
BstYI RGATCY 1 cut(s) 448
BstZ17I GTATAC 1 cut(s) 862
Bsu15I ATCGAT 1 cut(s) 607
BsuI GTATCC 1 cut(s) 657
BsuTUI ATCGAT 1 cut(s) 607
BtgI CCRYGG 1 cut(s) 29
BtsI GCAGTG 2 cut(s) 65, 120
BtsIMutI CAGTG 3 cut(s) 65, 120, 748
Cac8I GCNNGC 2 cut(s) 157, 414
CciI TCATGA 1 cut(s) 333
CfoI GCGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 423
ClaI ATCGAT 1 cut(s) 607
Csp6I GTAC 1 cut(s) 368
CviAII CATG 9 cut(s) 30, 43, 117, 254, 334, 342, 392, 636, 787
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 3 cut(s) 316, 537, 835
DpnI GATC 4 cut(s) 330, 450, 462, 819
DpnII GATC 4 cut(s) 328, 448, 460, 817
Ecl136II GAGCTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 339
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 574
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 9 cut(s) 33, 46, 120, 257, 337, 345, 395, 639, 790
FaqI GGGAC 1 cut(s) 402
FatI CATG 9 cut(s) 29, 42, 116, 253, 333, 341, 391, 635, 786
FblI GTMKAC 2 cut(s) 258, 861
Fnu4HI GCNGC 1 cut(s) 756
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 756
FspBI CTAG 1 cut(s) 486
GlaI GCGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 756
GsaI CCCAGC 1 cut(s) 155
HapII CCGG 4 cut(s) 424, 562, 661, 810
HhaI GCGC 1 cut(s) 243
Hin1II CATG 9 cut(s) 33, 46, 120, 257, 337, 345, 395, 639, 790
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 3 cut(s) 162, 314, 454
HpaII CCGG 4 cut(s) 424, 562, 661, 810
HphI GGTGA 1 cut(s) 762
Hpy166II GTNNAC 4 cut(s) 259, 507, 705, 862
Hpy188I TCNGA 5 cut(s) 133, 319, 453, 465, 817
Hpy188III TCNNGA 4 cut(s) 247, 326, 334, 458
Hpy8I GTNNAC 4 cut(s) 259, 507, 705, 862
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 3 cut(s) 535, 692, 832
HpyCH4III ACNGT 2 cut(s) 372, 511
HpyCH4V TGCA 8 cut(s) 93, 120, 404, 507, 653, 679, 758, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 513, 632, 802, 836
HpyF3I CTNAG 3 cut(s) 316, 537, 835
Hsp92II CATG 9 cut(s) 33, 46, 120, 257, 337, 345, 395, 639, 790
HspAI GCGC 1 cut(s) 241
Kzo9I GATC 4 cut(s) 328, 448, 460, 817
LmnI GCTCC 1 cut(s) 632
Lsp1109I GCAGC 1 cut(s) 742
LweI GCATC 3 cut(s) 43, 484, 727
MaeI CTAG 1 cut(s) 486
MaeIII GTNAC 3 cut(s) 4, 247, 350
MalI GATC 4 cut(s) 330, 450, 462, 819
MboI GATC 4 cut(s) 328, 448, 460, 817
MboII GAAGA 3 cut(s) 138, 170, 518
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 2 cut(s) 341, 509
MluCI AATT 4 cut(s) 111, 627, 668, 728
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 8 cut(s) 32, 89, 96, 181, 313, 358, 547, 572
MseI TTAA 2 cut(s) 569, 723
MspI CCGG 4 cut(s) 424, 562, 661, 810
MspR9I CCNGG 3 cut(s) 563, 576, 811
MunI CAATTG 1 cut(s) 627
MvaI CCWGG 1 cut(s) 576
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 4 cut(s) 513, 632, 802, 836
NciI CCSGG 2 cut(s) 563, 811
NcoI CCATGG 1 cut(s) 29
NdeII GATC 4 cut(s) 328, 448, 460, 817
NlaIII CATG 9 cut(s) 33, 46, 120, 257, 337, 345, 395, 639, 790
NmuCI GTSAC 3 cut(s) 4, 247, 350
NspI RCATGY 1 cut(s) 257
PagI TCATGA 1 cut(s) 333
PciI ACATGT 1 cut(s) 253
PfeI GAWTC 2 cut(s) 162, 454
PflMI CCANNNNNTGG 1 cut(s) 694
PkrI GCNGC 1 cut(s) 757
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PscI ACATGT 1 cut(s) 253
PshAI GACNNNNGTC 1 cut(s) 254
Psp124BI GAGCTC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 574
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 574
PstI CTGCAG 1 cut(s) 760
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SacI GAGCTC 1 cut(s) 341
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 2 cut(s) 569, 723
SatI GCNGC 1 cut(s) 756
Sau3AI GATC 4 cut(s) 328, 448, 460, 817
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 563, 576, 811
SduI GDGCHC 2 cut(s) 341, 509
SfaNI GCATC 3 cut(s) 43, 484, 727
SfcI CTRYAG 1 cut(s) 756
SmlI CTYRAG 2 cut(s) 23, 470
SmoI CTYRAG 2 cut(s) 23, 470
Sse9I AATT 4 cut(s) 111, 627, 668, 728
SsiI CCGC 2 cut(s) 239, 551
SspMI CTAG 1 cut(s) 486
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 3 cut(s) 561, 574, 809
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 372, 511
TaqI TCGA 2 cut(s) 258, 607
TasI AATT 4 cut(s) 111, 627, 668, 728
TfiI GAWTC 2 cut(s) 162, 454
Tru1I TTAA 2 cut(s) 569, 723
Tru9I TTAA 2 cut(s) 569, 723
TscAI CASTG 3 cut(s) 65, 127, 748
TseFI GTSAC 3 cut(s) 4, 247, 350
TseI GCWGC 1 cut(s) 755
Tsp45I GTSAC 3 cut(s) 4, 247, 350
TspDTI ATGAA 5 cut(s) 105, 117, 259, 577, 775
TspRI CASTG 3 cut(s) 65, 127, 748
Van91I CCANNNNNTGG 1 cut(s) 694
VneI GTGCAC 1 cut(s) 505
XceI RCATGY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
XmiI GTMKAC 2 cut(s) 258, 861
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.