MD09G1020500.v1.1

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015187
Physical Location & Seq
Reverse (-)
1245992 .. 1247820
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1020500.v1.1.491

Sequence Viewer

Length: 867 bp
ATGGTCACAATTCATCCAAACCTCAAACCATGGCATCCATTTCTTACAAGCAACCATAAGACCAAACCTTTCCTACTTCCATCAACAATCTCCTGCACTTCTTCAAGTGAAAACAATGAAACCAGTAAACCATCTTCATCCTTAGCTGGCAAGATCAAACGTCTTGTTCTTCCCCAAGAGGGCAGAGCAAAACTCAACACTTATCCGGACAGAGACTTCTACGCTTATCCGCGATTCGTGACGCATGTCGATGACGGCTTCATTGCCACACTGACCAATTTCTACAGGCAGAGGCTGAGGCCTGGCTCAGAGATTCTTGATCTTATGAGTTCGTGGATCAGCCATTTGCCGAAAAAAGTTGAGTACAAGAAAGTTGTGGGACATGGGCTCAATGCACAGGAGCTTGCCAAGAACCCTAGGTTGGATTACTTTTTTGTCAAGGATCTGAACCAGGATCAGAAGCTTGAGTTGGAGAGCTGCAGTTTTGATGCAGTGTTGTGTACAGTCAGTGTGCAGTATCTTCAACAGCCTGAGAAGGTGTTTGCAGAGGTTTTTAGGGTTCTGAGGCCAGGAGGGGTGTTTATTGTGAGCTTTAGCAATCGGTTGTTCTATGAGAAAGCCATTGGGGCATGGAGAGATGGGACTGCGTACAGCAGGACGCAGTTGGTTGTGCAGTACTTCCAATCTGTGGAAGGTTTCACACAAGCTGAAGTAATTAAGAAATTACCAGATGCTAATGGTGGTGGTGGTGGTTCACAAAGCAAATCACCACTCGGTTGGTTTATGGGCTTCCTGGGGTTGTTGTCTGGTTCTGATCCATTTTATGCAGTGGTAGCTTACAAGAACTTCAAACCTGTATATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

289

Amino Acids

32.51

Weight (kDa)

9.24

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_12 PF08242 131 - 194 7.7e-07 Methyltransferase domain
Methyltransf_25 PF13649 144 - 192 1.8e-06 Methyltransferase domain
Methyltransf_11 PF08241 146 - 196 2.8e-10 Methyltransferase domain
Methyltransf_31 PF13847 147 - 200 8.7e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01660
fragaria_vesca FvH4_6g52050
malus_domestica MD09G1020500.v1.1
prunus_persica Prupe.3G295700_v2.0.a1
pyrus_communis pycom111g01720
rosa_chinensis RchiOBHm_Chr2g0173561
rosa_laevigata RLG00000022202
rosa_multiflora Rmu_sc0002538.1_g000024 Rmu_sc0029872.1_g000002
rosa_roxburghii Rroxscaffold_2G00078780
rosa_rugosa Rorug02G0571400
rosa_samantha Rh2AG650200 Rh2BG660600 Rh2CG625500 Rh2DG675900
rosa_wichuraiana Rw2G053360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 688
AccII CGCG 1 cut(s) 232
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 1 cut(s) 230
AclWI GGATC 4 cut(s) 344, 450, 462, 809
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 4 cut(s) 365, 502, 650, 677
AfiI CCNNNNNNNGG 3 cut(s) 179, 421, 688
AgsI TTSAA 3 cut(s) 105, 524, 850
AjnI CCWGG 4 cut(s) 301, 450, 568, 792
AjuI GAANNNNNNNTTGG 4 cut(s) 404, 436, 452, 484
AluBI AGCT 7 cut(s) 146, 403, 463, 477, 591, 707, 836
AluI AGCT 7 cut(s) 146, 403, 463, 477, 591, 707, 836
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 4 cut(s) 344, 450, 462, 809
AlwNI CAGNNNCTG 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 2 cut(s) 299, 566
ApeKI GCWGC 1 cut(s) 477
AspA2I CCTAGG 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 759
AvrII CCTAGG 1 cut(s) 416
BanII GRGCYC 1 cut(s) 390
BarI GAAGNNNNNNTAC 2 cut(s) 118, 150
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 464
BccI CCATC 3 cut(s) 88, 139, 632
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 4 cut(s) 303, 452, 570, 794
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 2 cut(s) 283, 478
BglI GCCNNNNNGGC 1 cut(s) 626
BisI GCNGC 1 cut(s) 478
BlnI CCTAGG 1 cut(s) 416
BlsI GCNGC 1 cut(s) 479
BmcAI AGTACT 1 cut(s) 677
Bme1390I CCNGG 4 cut(s) 303, 452, 570, 794
BmrFI CCNGG 4 cut(s) 303, 452, 570, 794
BmsI GCATC 3 cut(s) 43, 478, 721
BoxI GACNNNNGTC 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 177, 209
Bpu10I CCTNAGC 2 cut(s) 142, 296
BpuEI CTTGAG 1 cut(s) 485
BsaJI CCNNGG 3 cut(s) 29, 416, 793
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 421, 688
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 261
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 4 cut(s) 303, 452, 570, 794
BseDI CCNNGG 3 cut(s) 29, 416, 793
BseGI GGATG 3 cut(s) 13, 34, 137
BseLI CCNNNNNNNGG 3 cut(s) 179, 421, 688
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 4 cut(s) 287, 321, 522, 554
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 464
BsgI GTGCAG 3 cut(s) 79, 533, 692
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 2 cut(s) 301, 568
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 2 cut(s) 393, 655
BslI CCNNNNNNNGG 3 cut(s) 179, 421, 688
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 2 cut(s) 393, 655
BsnI GGCC 2 cut(s) 301, 568
Bsp1286I GDGCHC 1 cut(s) 390
Bsp13I TCCGGA 1 cut(s) 205
Bsp1407I TGTACA 1 cut(s) 500
Bsp143I GATC 6 cut(s) 153, 319, 336, 442, 454, 814
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 1 cut(s) 230
BspANI GGCC 2 cut(s) 301, 568
BspCNI CTCAG 4 cut(s) 288, 320, 523, 555
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 482
BspPI GGATC 4 cut(s) 344, 450, 462, 809
BsrDI GCAATG 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 500
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 29, 416, 793
BssMI GATC 6 cut(s) 153, 319, 336, 442, 454, 814
BssT1I CCWWGG 2 cut(s) 29, 416
Bst2UI CCWGG 4 cut(s) 303, 452, 570, 794
Bst4CI ACNGT 1 cut(s) 505
BstAUI TGTACA 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 148, 405
BstDEI CTNAG 5 cut(s) 142, 296, 307, 531, 563
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 3 cut(s) 13, 34, 137
BstFNI CGCG 1 cut(s) 232
BstKTI GATC 6 cut(s) 156, 322, 339, 445, 457, 817
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 6 cut(s) 153, 319, 336, 442, 454, 814
BstMWI GCNNNNNNNGC 2 cut(s) 626, 833
BstNI CCWGG 4 cut(s) 303, 452, 570, 794
BstNSI RCATGY 1 cut(s) 248
BstPAI GACNNNNGTC 1 cut(s) 245
BstSCI CCNGG 4 cut(s) 301, 450, 568, 792
BstSFI CTRYAG 2 cut(s) 283, 478
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 777
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 2 cut(s) 301, 568
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 3 cut(s) 13, 34, 137
BtsI GCAGTG 2 cut(s) 498, 834
BtsIMutI CAGTG 4 cut(s) 269, 498, 514, 834
Cac8I GCNNGC 2 cut(s) 148, 405
CaiI CAGNNNCTG 1 cut(s) 295
CseI GACGC 2 cut(s) 250, 667
Csp6I GTAC 4 cut(s) 364, 501, 649, 676
CviAII CATG 4 cut(s) 30, 245, 383, 630
CviQI GTAC 4 cut(s) 364, 501, 649, 676
DdeI CTNAG 5 cut(s) 142, 296, 307, 531, 563
DpnI GATC 6 cut(s) 155, 321, 338, 444, 456, 816
DpnII GATC 6 cut(s) 153, 319, 336, 442, 454, 814
Eco130I CCWWGG 2 cut(s) 29, 416
Eco147I AGGCCT 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 729
EcoRII CCWGG 4 cut(s) 301, 450, 568, 792
EcoT14I CCWWGG 2 cut(s) 29, 416
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 2 cut(s) 29, 416
FaeI CATG 4 cut(s) 33, 248, 386, 633
FaqI GGGAC 2 cut(s) 393, 655
FatI CATG 4 cut(s) 29, 244, 382, 629
Fnu4HI GCNGC 1 cut(s) 478
FokI GGATG 2 cut(s) 21, 124
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 478
FspBI CTAG 1 cut(s) 417
GluI GCNGC 1 cut(s) 478
HaeIII GGCC 2 cut(s) 301, 568
HapII CCGG 1 cut(s) 206
HgaI GACGC 2 cut(s) 250, 667
Hin1II CATG 4 cut(s) 33, 248, 386, 633
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 2 cut(s) 234, 313
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 759
Hpy166II GTNNAC 3 cut(s) 128, 501, 755
Hpy188I TCNGA 5 cut(s) 310, 447, 459, 564, 814
Hpy188III TCNNGA 3 cut(s) 206, 238, 317
Hpy8I GTNNAC 3 cut(s) 128, 501, 755
HpyAV CCTTC 2 cut(s) 529, 686
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 8 cut(s) 96, 395, 480, 491, 514, 545, 673, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 626, 833
HpyF3I CTNAG 5 cut(s) 142, 296, 307, 531, 563
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 4 cut(s) 33, 248, 386, 633
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 6 cut(s) 153, 319, 336, 442, 454, 814
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 3 cut(s) 43, 478, 721
MaeI CTAG 1 cut(s) 417
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 4, 238
MalI GATC 6 cut(s) 155, 321, 338, 444, 456, 816
MboI GATC 6 cut(s) 153, 319, 336, 442, 454, 814
MboII GAAGA 4 cut(s) 93, 126, 161, 512
MflI RGATCY 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 4 cut(s) 9, 277, 714, 722
MmeI TCCRAC 2 cut(s) 402, 450
MnlI CCTC 7 cut(s) 32, 172, 285, 291, 541, 558, 566
MroI TCCGGA 1 cut(s) 205
MseI TTAA 1 cut(s) 717
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 4 cut(s) 303, 452, 570, 794
MvaI CCWGG 4 cut(s) 303, 452, 570, 794
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 626, 833
NcoI CCATGG 1 cut(s) 29
NdeII GATC 6 cut(s) 153, 319, 336, 442, 454, 814
NlaIII CATG 4 cut(s) 33, 248, 386, 633
NmuCI GTSAC 2 cut(s) 4, 238
NspI RCATGY 1 cut(s) 248
PceI AGGCCT 1 cut(s) 301
PfeI GAWTC 2 cut(s) 234, 313
PflMI CCANNNNNTGG 1 cut(s) 688
PkrI GCNGC 1 cut(s) 479
PshAI GACNNNNGTC 1 cut(s) 245
Psp6I CCWGG 4 cut(s) 301, 450, 568, 792
PspGI CCWGG 4 cut(s) 301, 450, 568, 792
PstI CTGCAG 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 4 cut(s) 365, 502, 650, 677
RsaNI GTAC 4 cut(s) 364, 501, 649, 676
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 717
SatI GCNGC 1 cut(s) 478
Sau3AI GATC 6 cut(s) 153, 319, 336, 442, 454, 814
ScaI AGTACT 1 cut(s) 677
ScrFI CCNGG 4 cut(s) 303, 452, 570, 794
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 3 cut(s) 43, 478, 721
SfcI CTRYAG 2 cut(s) 283, 478
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 4 cut(s) 9, 277, 714, 722
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 1 cut(s) 230
SspMI CTAG 1 cut(s) 417
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 4 cut(s) 301, 450, 568, 792
StyI CCWWGG 2 cut(s) 29, 416
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 249
TasI AATT 4 cut(s) 9, 277, 714, 722
TatI WGTACW 3 cut(s) 363, 500, 675
TfiI GAWTC 2 cut(s) 234, 313
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TscAI CASTG 4 cut(s) 276, 498, 514, 834
TseFI GTSAC 2 cut(s) 4, 238
TseI GCWGC 1 cut(s) 477
Tsp45I GTSAC 2 cut(s) 4, 238
TspDTI ATGAA 3 cut(s) 126, 132, 250
TspRI CASTG 4 cut(s) 276, 498, 514, 834
Van91I CCANNNNNTGG 1 cut(s) 688
XceI RCATGY 1 cut(s) 248
XmaJI CCTAGG 1 cut(s) 416
XspI CTAG 1 cut(s) 417
ZrmI AGTACT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.