Prupe.3G295700_v2.0.a1

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015187
Physical Location & Seq
Forward (+)
26312538 .. 26314185
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G295700.1

Sequence Viewer

Length: 903 bp
ATGGCCACAAACAATTCATCCAAATCTCAAGCCATGGCATCCATTTCTCACAAATTTACAAGCAACCCACAGACCTCACTCTCTCCTCAGTTCAAGACCAAAGCTCTGCCGCTCCCATCATCAAGAATTTTATGCACTTCAAGTGAAAACAATGAAACCAAGCAATCTCTGTCCTCAGCAGGAAAAATCAAACGTCTTGTTCTTCCCCAAGAGGGCAGAACAAAACTCAACACTTACCCGGACAGAGATTTCTACGCTTATCCACGCCTTGTGACCCATGTTGATGATGGCTTCATTTCCACATTAACCAATCTCTACAGACAAAAGTTGAGGCCTAACTCAGAGATTCTTGATCTTATGAGTTCATGGGTCAGCCATTTACCAGAAGAGGTTGAGTACAAAAAAGTGGTTGGGCATGGGCTCAATGCACAAGAACTTGCCAAGAACCCAAGGCTGGACTATTTCTTTGTCAAGGATCTGAACCAGGATCAGAAGCTGGAGTTGGAGAGCTCCAGTTTTGATGCAGTTTTGTGCACAGTCAGTGTGCAGTATCTTCAACAGCCTGAGAAGGTGTTTGCAGAGGTGTTTAGGGTTCTAAGGCCAGGAGGGGTGTTTATTGTGAGCTTTAGCAATCGATTGTTCTATGAGAAAGCCATAGGCGCATGGAGAGATGGGAGTGCATACAGCAGAACACAATTGGTTGTGCAATACTTTCAATCTGTGGAAGGGTTCACGCAAGCTGAAATAATTAAGAAATTACCAGACCCAAATGGTGGTGGTGGTGGTGCTCCACAAAATAAATCACCATTCAGTTGGGTCATGGGTTTGCTGGGATTGCTATCCGGGTCGGATCCCTTTTATGCAGTGATAGCTTACAAGAACTTCAAGCCTGTATATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

301

Amino Acids

33.63

Weight (kDa)

9.11

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015187)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01660
fragaria_vesca FvH4_6g52050
malus_domestica MD09G1020500.v1.1
prunus_persica Prupe.3G295700_v2.0.a1
pyrus_communis pycom111g01720
rosa_chinensis RchiOBHm_Chr2g0173561
rosa_laevigata RLG00000022202
rosa_multiflora Rmu_sc0002538.1_g000024 Rmu_sc0029872.1_g000002
rosa_roxburghii Rroxscaffold_2G00078780
rosa_rugosa Rorug02G0571400
rosa_samantha Rh2AG650200 Rh2BG660600 Rh2CG625500 Rh2DG675900
rosa_wichuraiana Rw2G053360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 773
AccBSI CCGCTC 1 cut(s) 112
AciI CCGC 1 cut(s) 110
AclWI GGATC 4 cut(s) 483, 495, 845, 858
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 53, 126
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 3 cut(s) 212, 454, 773
AgsI TTSAA 5 cut(s) 94, 141, 557, 716, 886
AjnI CCWGG 2 cut(s) 483, 601
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 6 cut(s) 104, 496, 510, 624, 740, 872
AluI AGCT 6 cut(s) 104, 496, 510, 624, 740, 872
Alw21I GWGCWC 3 cut(s) 512, 536, 790
Alw44I GTGCAC 1 cut(s) 532
AlwI GGATC 4 cut(s) 483, 495, 845, 858
AlwNI CAGNNNCTG 1 cut(s) 496
AoxI GGCC 3 cut(s) 3, 332, 599
ApaLI GTGCAC 1 cut(s) 532
ApoI RAATTY 2 cut(s) 53, 126
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AspLEI GCGC 1 cut(s) 662
AsuC2I CCSGG 2 cut(s) 239, 844
AsuHPI GGTGA 1 cut(s) 795
BaeGI GKGCMC 1 cut(s) 536
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 850
BanII GRGCYC 2 cut(s) 423, 512
Bbv12I GWGCWC 3 cut(s) 512, 536, 790
BbvCI CCTCAGC 1 cut(s) 175
BccI CCATC 3 cut(s) 124, 281, 665
BciT130I CCWGG 2 cut(s) 485, 603
BcnI CCSGG 2 cut(s) 239, 844
BfmI CTRYAG 1 cut(s) 316
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 4 cut(s) 239, 485, 603, 844
BmiI GGNNCC 1 cut(s) 852
BmrFI CCNGG 4 cut(s) 239, 485, 603, 844
BmsI GCATC 2 cut(s) 47, 511
BpmI CTGGAG 2 cut(s) 496, 518
Bpu10I CCTNAGC 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 12
BpuMI CCSGG 2 cut(s) 239, 844
Bsa29I ATCGAT 1 cut(s) 634
BsaBI GATNNNNATC 1 cut(s) 838
BsaJI CCNNGG 2 cut(s) 33, 449
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 454, 773
Bse1I ACTGG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 838
BseBI CCWGG 2 cut(s) 485, 603
BseCI ATCGAT 1 cut(s) 634
BseDI CCNNGG 2 cut(s) 33, 449
BseGI GGATG 2 cut(s) 17, 38
BseJI GATNNNNATC 1 cut(s) 838
BseLI CCNNNNNNNGG 3 cut(s) 212, 454, 773
BseMII CTCAG 4 cut(s) 101, 189, 354, 555
BseNI ACTGG 1 cut(s) 513
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 536
BseYI CCCAGC 1 cut(s) 829
BsgI GTGCAG 1 cut(s) 566
BshFI GGCC 3 cut(s) 5, 334, 601
BshVI ATCGAT 1 cut(s) 634
BsiHKAI GWGCWC 3 cut(s) 512, 536, 790
BsiSI CCGG 2 cut(s) 239, 843
BslI CCNNNNNNNGG 3 cut(s) 212, 454, 773
BsnI GGCC 3 cut(s) 5, 334, 601
Bsp1286I GDGCHC 4 cut(s) 423, 512, 536, 790
Bsp143I GATC 4 cut(s) 352, 475, 487, 850
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 1 cut(s) 110
BspANI GGCC 3 cut(s) 5, 334, 601
BspCNI CTCAG 4 cut(s) 100, 188, 353, 556
BspDI ATCGAT 1 cut(s) 634
BspLI GGNNCC 1 cut(s) 852
BspPI GGATC 4 cut(s) 483, 495, 845, 858
BsrBI CCGCTC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 2 cut(s) 33, 449
BssMI GATC 4 cut(s) 352, 475, 487, 850
BssT1I CCWWGG 2 cut(s) 33, 449
Bst2UI CCWGG 2 cut(s) 485, 603
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 738
BstDEI CTNAG 5 cut(s) 87, 175, 340, 564, 596
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 17, 38
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 4 cut(s) 355, 478, 490, 853
BstMBI GATC 4 cut(s) 352, 475, 487, 850
BstMWI GCNNNNNNNGC 3 cut(s) 659, 835, 869
BstNI CCWGG 2 cut(s) 485, 603
BstSCI CCNGG 4 cut(s) 237, 483, 601, 842
BstSFI CTRYAG 1 cut(s) 316
BstSLI GKGCMC 1 cut(s) 536
BstX2I RGATCY 2 cut(s) 475, 850
BstXI CCANNNNNNTGG 1 cut(s) 813
BstYI RGATCY 2 cut(s) 475, 850
Bsu15I ATCGAT 1 cut(s) 634
BsuRI GGCC 3 cut(s) 5, 334, 601
BsuTUI ATCGAT 1 cut(s) 634
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 17, 38
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 2 cut(s) 547, 870
Cac8I GCNNGC 1 cut(s) 738
CaiI CAGNNNCTG 1 cut(s) 496
CfoI GCGC 1 cut(s) 662
ClaI ATCGAT 1 cut(s) 634
Csp6I GTAC 1 cut(s) 397
CviAII CATG 6 cut(s) 34, 278, 366, 416, 663, 820
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 5 cut(s) 87, 175, 340, 564, 596
DpnI GATC 4 cut(s) 354, 477, 489, 852
DpnII GATC 4 cut(s) 352, 475, 487, 850
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Ecl136II GAGCTC 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 33, 449
Eco147I AGGCCT 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 423, 512
Eco53kI GAGCTC 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 510
EcoRII CCWGG 2 cut(s) 483, 601
EcoT14I CCWWGG 2 cut(s) 33, 449
EcoT38I GRGCYC 2 cut(s) 423, 512
ErhI CCWWGG 2 cut(s) 33, 449
FaeI CATG 6 cut(s) 37, 281, 369, 419, 666, 823
FatI CATG 6 cut(s) 33, 277, 365, 415, 662, 819
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 2 cut(s) 4, 25
FriOI GRGCYC 2 cut(s) 423, 512
Fsp4HI GCNGC 1 cut(s) 110
GlaI GCGC 1 cut(s) 661
GluI GCNGC 1 cut(s) 110
GsaI CCCAGC 1 cut(s) 833
GsuI CTGGAG 2 cut(s) 496, 518
HaeIII GGCC 3 cut(s) 5, 334, 601
HapII CCGG 2 cut(s) 239, 843
HhaI GCGC 1 cut(s) 662
Hin1II CATG 6 cut(s) 37, 281, 369, 419, 666, 823
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HinfI GANTC 1 cut(s) 346
HpaII CCGG 2 cut(s) 239, 843
HphI GGTGA 1 cut(s) 795
Hpy166II GTNNAC 2 cut(s) 534, 732
Hpy188I TCNGA 4 cut(s) 343, 480, 492, 850
Hpy188III TCNNGA 3 cut(s) 94, 123, 350
Hpy8I GTNNAC 2 cut(s) 534, 732
HpyAV CCTTC 2 cut(s) 562, 719
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 9 cut(s) 135, 428, 524, 534, 547, 578, 680, 706, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 659, 835, 869
HpyF3I CTNAG 5 cut(s) 87, 175, 340, 564, 596
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 6 cut(s) 37, 281, 369, 419, 666, 823
HspAI GCGC 1 cut(s) 660
Kzo9I GATC 4 cut(s) 352, 475, 487, 850
LmnI GCTCC 3 cut(s) 117, 515, 793
LweI GCATC 2 cut(s) 47, 511
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 271
MalI GATC 4 cut(s) 354, 477, 489, 852
MbiI CCGCTC 1 cut(s) 112
MboI GATC 4 cut(s) 352, 475, 487, 850
MboII GAAGA 3 cut(s) 194, 398, 545
MfeI CAATTG 1 cut(s) 695
MflI RGATCY 2 cut(s) 475, 850
MhlI GDGCHC 4 cut(s) 423, 512, 536, 790
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 13, 53, 126, 695, 747, 755
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 483, 828
MnlI CCTC 8 cut(s) 85, 96, 184, 205, 324, 382, 574, 599
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 305, 750
MslI CAYNNNNRTG 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 239, 843
MspR9I CCNGG 4 cut(s) 239, 485, 603, 844
MunI CAATTG 1 cut(s) 695
MvaI CCWGG 2 cut(s) 485, 603
MwoI GCNNNNNNNGC 3 cut(s) 659, 835, 869
NciI CCSGG 2 cut(s) 239, 844
NcoI CCATGG 1 cut(s) 33
NdeII GATC 4 cut(s) 352, 475, 487, 850
NlaIII CATG 6 cut(s) 37, 281, 369, 419, 666, 823
NlaIV GGNNCC 1 cut(s) 852
NmuCI GTSAC 1 cut(s) 271
PceI AGGCCT 1 cut(s) 334
PfeI GAWTC 1 cut(s) 346
PflMI CCANNNNNTGG 1 cut(s) 773
PkrI GCNGC 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 512
Psp6I CCWGG 2 cut(s) 483, 601
PspFI CCCAGC 1 cut(s) 829
PspGI CCWGG 2 cut(s) 483, 601
PspN4I GGNNCC 1 cut(s) 852
PstNI CAGNNNCTG 1 cut(s) 496
PsuI RGATCY 2 cut(s) 475, 850
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 282
SacI GAGCTC 1 cut(s) 512
SaqAI TTAA 2 cut(s) 305, 750
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 4 cut(s) 352, 475, 487, 850
ScrFI CCNGG 4 cut(s) 239, 485, 603, 844
SduI GDGCHC 4 cut(s) 423, 512, 536, 790
SfaNI GCATC 2 cut(s) 47, 511
SfcI CTRYAG 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 6 cut(s) 13, 53, 126, 695, 747, 755
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 1 cut(s) 110
SstI GAGCTC 1 cut(s) 512
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 4 cut(s) 237, 483, 601, 842
StyI CCWWGG 2 cut(s) 33, 449
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 634
TasI AATT 6 cut(s) 13, 53, 126, 695, 747, 755
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 305, 750
Tru9I TTAA 2 cut(s) 305, 750
TscAI CASTG 2 cut(s) 547, 870
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 4 cut(s) 6, 168, 283, 354
TspRI CASTG 2 cut(s) 547, 870
Van91I CCANNNNNTGG 1 cut(s) 773
VneI GTGCAC 1 cut(s) 532
XapI RAATTY 2 cut(s) 53, 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.