FvH4_6g52480

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005447
Physical Location & Seq
Reverse (-)
38630114 .. 38638808
8695 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52480.t2

Sequence Viewer

Length: 3318 bp
ATGGAGGTGGTGCTAGGGCTGAGAGCCAAGTCCAGAATAGCACTGCTCATTGTTCTCGTGCTCGGCGTCGTCCTCGCCGGAATCTATGGCTTGTTGAAGCCGGTTTCGAACGGGTGTAACATGACGTACATGTATCCGACGTATATTCCGATACAGTTCAGTAGCTCTGATTCAGCGCCGGCGAAGTACGGCTTGTATCTGTACCACGAGGGATGGAAGGCGATCGATTTCAAGGAGCATGTTCGGAAGCTCAGCGGTGTTCCGGTGCTTTTTATTCCGGGGAACGGCGGGAGCTATAAGCAGGTGAGGTCATTGGCGGCGGAATCTGATAGGGCGTATCAGGCAGGTCCACTTGAGCGTACGTATTATCGAGAAGCTTGGTTGACTCCGGAAGAGGGAGGGGAGGAGGATAGGGATGTAGGCGGTTATGAGTTGCCGAGTCAATACGATTCGAGGTTGGACTGGTTCGCTGTGGATCTTGAAGGTGAACACTCTGCTTTGGATAGCGGTGTACTTGAACAACAGATTTTGGATCAGTACGAGGAATCTTTCAAGGCTAGAGAAAAGGAAGGAGCTGCAACCTCTGCGACTTTGCCAAAAAGTGTTATATTGGTTGGTCATTCTATGGGTGGTTTTGTTGCTAGAGCTGCAGTTATCGACCCTCATTTGAGAAAGTCAGCAGTTGAAACAATTCTTACACTTTCCAGCCCACACCAATACCCTCCTGTGGCGCTACAGCCTTCCTTCGGTCACTACTTTAGACACATTAATCGAGAATGGAGAAAGGGATACGAGGTCCAAACAACTGCAGCAGGACACTACTTGTCTGATCCTGTTCTCTCCAATGTTGTTGTCATATCTATTTCTGGTGGTTATAATGATTACCAGGTAAGGACCAAGTATGAATCCCTTGATGGCATTGTGCCGCCTACCCATGGTTTTATGATCAGTAGTACCAGCATGAAAAATGTTTGGTTATCCATGGAACATCAAGTTATCTTATGGTGCAATCAATTAGTTATCCAAGTATCACACACTCTCCTTAGTTTGGCAGATCCCAGAACAGGCCAGCCTTTCTCTGACACAAGAATAAGACTTTCAATCTTTTCAAAAATGCTTCGTAGTGCGATACCACAAAGTTTCAATTGGAGGACGCAATCACGATTGTCTCAACAGTCAATACATGCTCCAACTAGAGACGTGAAAGACAGAACTGAATCACTGATCATCTCTGATGCTTGTCCTAGCAATGTTCATTGGAGTGATGATGGCCTTGAGAGGGACTTATATATCCAGACAACCACCGTCACTGTTTTAGCCATGGATGGTCGAAGACGGTGGTTGGACATTCGAAAACTGGGAACCAATGGAAGAAGTCACTTCATGTTAGTGACCAACCTTGCTCCATGTTCTGGGGTTAGACTTCATCTATGGCCTGAAAAAGGAAACTCAACTTCAGAGTTGCCTGTATGTAAAAGGATCCTTGAGGTGACATCGAGGATGGTGCTCATTCCATCAGGACCAGCACCAAGACAGATTGAACCAGGAAGCCAAACAGAGCAAGCTCCCCCTTCAGCTATACTCCTCTTAGGACCGCAGGATATGCGTGGTTTCAGATTCCTGACCATCTCAGTTGCACCACGTCCGAGTATTTCAGGTAGACCTCCACCAGCAGTTTCCATGGCTGTTGGTCAGTTTTTCAATCCAGAGGAAGGGGAGAGAGATATCTCTCCTTGGTCACCTCCGGTGTCTGGTTATTCTCACAAGGATTTATCTTGGAAGGAAGATCATCCCCTTGCTTTAAATCTATCATTCACAAGTAGCTTAGGCCTTCTGCCTGTAATATTCTCTTTGAAGACCGCAGGTTGTGGAATAAAGAGTTCTGGACTTCCAGATGAACAGGCTGGAGATACGGATAACAGCAAGCTCTGCAAGCTTCGCTGTTTCCCACCGGTTGCATTTGCTTGGGATGAAACATCAGGTCTGCATGTATTCAGAAATTTGTATAGCGACACAATTGTTGTTGATTCATCACCATCACTTTGGAGTTCACCTAGAAGTTCGGAGAAAACCTCCGTTATGTTGGTGGTAGATCCACATTGTTCATATAGGAGTGAGATGACAGTTTCTGTAATTGCAGTCGCCAGTAGGTTTTTGCTTGTGTATAATTCACAGATTATTGGTCTCTCCATTGTTGTTATCTTTTTCGCACTGATGCGGCAAGCATGTGCATGGGATCGTAATCTACCCATACCCTCGATGTTGAAGGCACTAGAGTCCAATTTGAGATTCCCAGTACCATTTATCTACCTTGCTATTGTGCCAATCGGTCTCTCCTTACTAGTTGGATTTTGGATTTCTCAACCATCTCCTTCATTTGCTAGCTTCACCATTGTCTCAGTTGTCTGCTATTTCCTTGCTAATGGCTTCGTAGCCATTCTGATTTTGATATCCCAGTTTGTGTTTTATGGGGCTGCTCTGCTACATATTTTCATCAAGAAAAGGTTTCAGTTGTCGGGAAAAAGTTCTCAATGGTTTCTGAATATGTCCTCTGGTTTTTGTTCATGGAAGGTGTTGAGGGTTATAAGAGCTAATCCCCTACTAGTTACAGCACTTGCTGCAATTACTTTGGCATGCTTGGTTCATCCGGCGTTGGGTCTACTTGTTGTCTTGTTCTATCATGCTTTATGCTGTCATACTGCACTTTGCAGTTATTTGACAGCTTCATTTCGCAGCCATGCACGAAGACATGAATCATTTGATTATAAGAAAGACGGCAATGATGGGTCTGACAAACTTATATTCAAACGTGATGGTCTATCAAACCAGAATTTCCCTTCTGAAGATACGTGCTCCAATAGCCCAGACTCTTCAAAAAGTTTTGGTGAAACTCAACTAGAGATATTCCATCATCGGCATGGGTTGTTTATTTTGCATCTTATTGCAGCACTCATGTTTGGCCCATCATTTGTGACTTGTTTGGAGAGAATCGGGACAGATCATAGCTTTCCATGGGTCTTGGATTCAGCTCTTTCCACAGGTGTGATCCTTCATGGTATCTTCACTTCAAACCCTCAGTTCAATTCCTTTCTGGTGTCTTTCCCTCCAATCCGAAACCTAGAAGTGAGGATGCATTTACTGTACCTGTTTGCTGGATACTATTCCTATCTCTCTTCCCTGGCCTTGGCTCCGTATAGGGAATTTTGTGTTATGGCTTTTGTAGGCTATAGTTCTATTGGTCTGACTGTCTTACAGAGATGGAACAAGTGGAAGGGAGATGCCCATTTTGTTAGCCGAAAACACTCTCATAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PGAP1

Protein Analysis

1106

Amino Acids

123.1

Weight (kDa)

8.58

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGAP1 PF07819 84 - 359 5.3e-82 PGAP1-like alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 876, 2585, 2766
AarI CACCTGC 1 cut(s) 292
Acc36I ACCTGC 3 cut(s) 292, 335, 1853
AccB7I CCANNNNNTGG 1 cut(s) 1412
AccI GTMKAC 2 cut(s) 1660, 2659
AccIII TCCGGA 1 cut(s) 388
AclWI GGATC 9 cut(s) 483, 540, 824, 1049, 1474, 1487, 2087, 2244, 3040
AcsI RAATTY 3 cut(s) 1999, 2830, 3200
AcuI CTGAAG 3 cut(s) 1440, 1557, 2862
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 9 cut(s) 128, 188, 203, 361, 513, 539, 955, 2298, 3143
AflIII ACRYGT 1 cut(s) 129
AgeI ACCGGT 1 cut(s) 1951
AhlI ACTAGT 2 cut(s) 2341, 2602
AjiI CACGTC 2 cut(s) 1201, 1643
AjnI CCWGG 3 cut(s) 885, 1543, 3177
AjuI GAANNNNNNNTTGG 2 cut(s) 2273, 2305
AleI CACNNNNGTG 1 cut(s) 3041
Alw21I GWGCWC 3 cut(s) 63, 1509, 2855
Alw26I GTCTC 5 cut(s) 1173, 1191, 2189, 2336, 2401
AlwI GGATC 9 cut(s) 483, 540, 824, 1049, 1474, 1487, 2087, 2244, 3040
AlwNI CAGNNNCTG 1 cut(s) 2129
Aor13HI TCCGGA 1 cut(s) 388
AoxI GGCC 6 cut(s) 1066, 1270, 1433, 1828, 2959, 3180
ApeKI GCWGC 7 cut(s) 575, 647, 809, 2474, 2618, 2733, 2945
ApoI RAATTY 3 cut(s) 1999, 2830, 3200
AseI ATTAAT 1 cut(s) 768
AsiGI ACCGGT 1 cut(s) 1951
Asp700I GAANNNNTTC 2 cut(s) 690, 2524
AspLEI GCGC 2 cut(s) 178, 733
AspS9I GGNCC 6 cut(s) 347, 796, 894, 1520, 1592, 2960
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 8 cut(s) 316, 497, 1501, 1731, 2025, 2043, 2380, 2897
AsuII TTCGAA 2 cut(s) 107, 1351
AsuNHI GCTAGC 1 cut(s) 2381
AvaII GGWCC 5 cut(s) 347, 796, 894, 1520, 1592
BamHI GGATCC 1 cut(s) 1479
BarI GAAGNNNNNNTAC 2 cut(s) 3049, 3081
BauI CACGAG 2 cut(s) 56, 206
BbsI GAAGAC 3 cut(s) 1339, 1862, 2752
Bbv12I GWGCWC 3 cut(s) 63, 1509, 2855
BbvI GCAGC 7 cut(s) 562, 634, 821, 2461, 2605, 2745, 2957
BceAI ACGGC 3 cut(s) 205, 301, 2791
BcgI CGANNNNNNTGC 2 cut(s) 1486, 1520
BciT130I CCWGG 3 cut(s) 887, 1545, 3179
BciVI GTATCC 3 cut(s) 144, 782, 3149
BclI TGATCA 2 cut(s) 945, 1224
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 5 cut(s) 1173, 1191, 2189, 2336, 2401
BcuI ACTAGT 2 cut(s) 2341, 2602
BfmI CTRYAG 4 cut(s) 648, 734, 807, 3226
BfoI RGCGCY 2 cut(s) 179, 734
BfuAI ACCTGC 3 cut(s) 292, 335, 1853
BfuI GTATCC 3 cut(s) 144, 782, 3149
BlpI GCTNAGC 1 cut(s) 251
Bme1390I CCNGG 4 cut(s) 279, 887, 1545, 3179
Bme18I GGWCC 5 cut(s) 347, 796, 894, 1520, 1592
BmgBI CACGTC 2 cut(s) 1201, 1643
BmgT120I GGNCC 6 cut(s) 347, 796, 894, 1520, 1592, 2960
BmiI GGNNCC 3 cut(s) 1363, 1481, 3189
BmrFI CCNGG 4 cut(s) 279, 887, 1545, 3179
BmrI ACTGGG 3 cut(s) 1367, 2288, 2449
BmsI GCATC 5 cut(s) 1225, 2205, 2944, 3120, 3268
BmtI GCTAGC 1 cut(s) 2385
BmuI ACTGGG 3 cut(s) 1367, 2288, 2449
BpiI GAAGAC 3 cut(s) 1339, 1862, 2752
BplI GAGNNNNNCTC 2 cut(s) 2057, 2089
BpmI CTGGAG 1 cut(s) 1926
Bpu10I CCTNAGC 1 cut(s) 1825
Bpu1102I GCTNAGC 1 cut(s) 251
Bpu14I TTCGAA 2 cut(s) 107, 1351
BpuEI CTTGAG 3 cut(s) 374, 1295, 1505
BpuMI CCSGG 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 225
BsaAI YACGTR 2 cut(s) 363, 2850
BsaBI GATNNNNATC 1 cut(s) 2241
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 2 cut(s) 2189, 2336
BsaJI CCNNGG 9 cut(s) 278, 934, 981, 1320, 1680, 1733, 3011, 3177, 3183
BsaWI WCCGGW 4 cut(s) 262, 388, 1744, 1951
BsaXI ACNNNNNCTCC 2 cut(s) 1023, 1053
Bse118I RCCGGY 3 cut(s) 100, 178, 1951
Bse1I ACTGG 5 cut(s) 467, 1362, 2145, 2294, 2455
Bse3DI GCAATG 2 cut(s) 1255, 2785
Bse8I GATNNNNATC 1 cut(s) 2241
BseAI TCCGGA 1 cut(s) 388
BseBI CCWGG 3 cut(s) 887, 1545, 3179
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 9 cut(s) 278, 934, 981, 1320, 1680, 1733, 3011, 3177, 3183
BseGI GGATG 8 cut(s) 218, 421, 1330, 1506, 1789, 1975, 2644, 3135
BseJI GATNNNNATC 1 cut(s) 2241
BseMI GCAATG 2 cut(s) 1255, 2785
BseMII CTCAG 5 cut(s) 11, 265, 1644, 2412, 3089
BseNI ACTGG 5 cut(s) 467, 1362, 2145, 2294, 2455
BseRI GAGGAG 2 cut(s) 419, 1574
BseXI GCAGC 7 cut(s) 562, 634, 821, 2461, 2605, 2745, 2957
BsgI GTGCAG 1 cut(s) 2685
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 6 cut(s) 1068, 1272, 1435, 1830, 2961, 3182
BshTI ACCGGT 1 cut(s) 1951
BshVI ATCGAT 1 cut(s) 225
BsiEI CGRYCG 1 cut(s) 225
BsiHKAI GWGCWC 3 cut(s) 63, 1509, 2855
BsiSI CCGG 9 cut(s) 78, 101, 179, 263, 278, 389, 1745, 1952, 2648
BsiWI CGTACG 1 cut(s) 359
BslFI GGGAC 2 cut(s) 1295, 3007
BsmAI GTCTC 5 cut(s) 1173, 1191, 2189, 2336, 2401
BsmBI CGTCTC 1 cut(s) 1191
BsmFI GGGAC 2 cut(s) 1295, 3007
BsnI GGCC 6 cut(s) 1068, 1272, 1435, 1830, 2961, 3182
Bso31I GGTCTC 2 cut(s) 2189, 2336
Bsp119I TTCGAA 2 cut(s) 107, 1351
Bsp1286I GDGCHC 3 cut(s) 63, 1509, 2855
Bsp13I TCCGGA 1 cut(s) 388
Bsp1720I GCTNAGC 1 cut(s) 251
Bsp19I CCATGG 5 cut(s) 934, 981, 1320, 1680, 3011
BspANI GGCC 6 cut(s) 1068, 1272, 1435, 1830, 2961, 3182
BspCNI CTCAG 5 cut(s) 12, 264, 1643, 2411, 3088
BspDI ATCGAT 1 cut(s) 225
BspEI TCCGGA 1 cut(s) 388
BspLI GGNNCC 3 cut(s) 1363, 1481, 3189
BspMAI CTGCAG 2 cut(s) 652, 811
BspMI ACCTGC 3 cut(s) 292, 335, 1853
BspOI GCTAGC 1 cut(s) 2385
BspPI GGATC 9 cut(s) 483, 540, 824, 1049, 1474, 1487, 2087, 2244, 3040
BspT104I TTCGAA 2 cut(s) 107, 1351
BspTNI GGTCTC 2 cut(s) 2189, 2336
BsrDI GCAATG 2 cut(s) 1255, 2785
BsrFI RCCGGY 3 cut(s) 100, 178, 1951
BsrI ACTGG 5 cut(s) 467, 1362, 2145, 2294, 2455
BssAI RCCGGY 3 cut(s) 100, 178, 1951
BssECI CCNNGG 9 cut(s) 278, 934, 981, 1320, 1680, 1733, 3011, 3177, 3183
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 2 cut(s) 56, 206
BssT1I CCWWGG 7 cut(s) 934, 981, 1320, 1680, 1733, 3011, 3183
Bst2BI CACGAG 2 cut(s) 56, 206
Bst2UI CCWGG 3 cut(s) 887, 1545, 3179
Bst4CI ACNGT 8 cut(s) 156, 1176, 1306, 1312, 1338, 2125, 3141, 3247
Bst6I CTCTTC 3 cut(s) 387, 2875, 3178
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 4 cut(s) 584, 1603, 1929, 2618
BstBAI YACGTR 2 cut(s) 363, 2850
BstBI TTCGAA 2 cut(s) 107, 1351
BstC8I GCNNGC 8 cut(s) 180, 1070, 1563, 1925, 1934, 2223, 2383, 2635
BstDEI CTNAG 8 cut(s) 20, 251, 1043, 1588, 1630, 1825, 2398, 3075
BstDSI CCRYGG 5 cut(s) 934, 981, 1320, 1680, 3011
BstEII GGTNACC 1 cut(s) 1737
BstENI CCTNNNNNAGG 1 cut(s) 1440
BstF5I GGATG 8 cut(s) 218, 421, 1330, 1506, 1789, 1975, 2644, 3135
BstH2I RGCGCY 2 cut(s) 179, 734
BstHHI GCGC 2 cut(s) 178, 733
BstMAI GTCTC 5 cut(s) 1173, 1191, 2189, 2336, 2401
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 9 cut(s) 341, 584, 647, 1603, 1929, 1933, 1938, 2618, 2859
BstNI CCWGG 3 cut(s) 887, 1545, 3179
BstNSI RCATGY 6 cut(s) 133, 242, 1187, 1991, 2229, 2637
BstPI GGTNACC 1 cut(s) 1737
BstSCI CCNGG 4 cut(s) 277, 885, 1543, 3177
BstSFI CTRYAG 4 cut(s) 648, 734, 807, 3226
BstSNI TACGTA 1 cut(s) 363
BstV1I GCAGC 7 cut(s) 562, 634, 821, 2461, 2605, 2745, 2957
BstV2I GAAGAC 3 cut(s) 1339, 1862, 2752
BstX2I RGATCY 4 cut(s) 475, 1054, 1479, 2092
BstXI CCANNNNNNTGG 1 cut(s) 2043
BstYI RGATCY 4 cut(s) 475, 1054, 1479, 2092
Bsu15I ATCGAT 1 cut(s) 225
BsuI GTATCC 3 cut(s) 144, 782, 3149
BsuRI GGCC 6 cut(s) 1068, 1272, 1435, 1830, 2961, 3182
BsuTUI ATCGAT 1 cut(s) 225
BtgI CCRYGG 5 cut(s) 934, 981, 1320, 1680, 3011
BtrI CACGTC 2 cut(s) 1201, 1643
BtsCI GGATG 8 cut(s) 218, 421, 1330, 1506, 1789, 1975, 2644, 3135
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 4 cut(s) 41, 1220, 1308, 2210
BveI ACCTGC 3 cut(s) 292, 335, 1853
Cac8I GCNNGC 8 cut(s) 180, 1070, 1563, 1925, 1934, 2223, 2383, 2635
CaiI CAGNNNCTG 1 cut(s) 2129
CfoI GCGC 2 cut(s) 178, 733
Cfr10I RCCGGY 3 cut(s) 100, 178, 1951
Cfr13I GGNCC 6 cut(s) 347, 796, 894, 1520, 1592, 2960
ClaI ATCGAT 1 cut(s) 225
CseI GACGC 2 cut(s) 55, 1162
CsiI ACCWGGT 1 cut(s) 885
Csp6I GTAC 9 cut(s) 127, 187, 202, 360, 512, 538, 954, 2297, 3142
CspAI ACCGGT 1 cut(s) 1951
CviQI GTAC 9 cut(s) 127, 187, 202, 360, 512, 538, 954, 2297, 3142
DdeI CTNAG 8 cut(s) 20, 251, 1043, 1588, 1630, 1825, 2398, 3075
DraI TTTAAA 1 cut(s) 1803
Eam1104I CTCTTC 3 cut(s) 387, 2875, 3178
EarI CTCTTC 3 cut(s) 387, 2875, 3178
EciI GGCGGA 1 cut(s) 335
Eco105I TACGTA 1 cut(s) 363
Eco130I CCWWGG 7 cut(s) 934, 981, 1320, 1680, 1733, 3011, 3183
Eco147I AGGCCT 1 cut(s) 1830
Eco31I GGTCTC 2 cut(s) 2189, 2336
Eco32I GATATC 2 cut(s) 1726, 2451
Eco47I GGWCC 5 cut(s) 347, 796, 894, 1520, 1592
Eco57I CTGAAG 3 cut(s) 1440, 1557, 2862
Eco91I GGTNACC 1 cut(s) 1737
EcoNI CCTNNNNNAGG 1 cut(s) 1440
EcoO65I GGTNACC 1 cut(s) 1737
EcoRII CCWGG 3 cut(s) 885, 1543, 3177
EcoRV GATATC 2 cut(s) 1726, 2451
EcoT14I CCWWGG 7 cut(s) 934, 981, 1320, 1680, 1733, 3011, 3183
EcoT22I ATGCAT 1 cut(s) 3135
ErhI CCWWGG 7 cut(s) 934, 981, 1320, 1680, 1733, 3011, 3183
Esp3I CGTCTC 1 cut(s) 1191
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 2 cut(s) 1295, 3007
FauI CCCGC 1 cut(s) 281
FbaI TGATCA 2 cut(s) 945, 1224
FblI GTMKAC 2 cut(s) 1660, 2659
FokI GGATG 8 cut(s) 225, 428, 1337, 1513, 1776, 1982, 2631, 3142
GlaI GCGC 2 cut(s) 177, 732
GsuI CTGGAG 1 cut(s) 1926
HaeII RGCGCY 2 cut(s) 179, 734
HaeIII GGCC 6 cut(s) 1068, 1272, 1435, 1830, 2961, 3182
HapII CCGG 9 cut(s) 78, 101, 179, 263, 278, 389, 1745, 1952, 2648
HgaI GACGC 2 cut(s) 55, 1162
HhaI GCGC 2 cut(s) 178, 733
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 2 cut(s) 176, 731
HinP1I GCGC 2 cut(s) 176, 731
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 2 cut(s) 375, 1934
HpaII CCGG 9 cut(s) 78, 101, 179, 263, 278, 389, 1745, 1952, 2648
HphI GGTGA 8 cut(s) 316, 497, 1501, 1731, 2025, 2043, 2380, 2897
Hpy166II GTNNAC 7 cut(s) 350, 384, 488, 512, 1661, 2051, 2660
Hpy8I GTNNAC 7 cut(s) 350, 384, 488, 512, 1661, 2051, 2660
Hpy99I CGWCG 2 cut(s) 71, 142
HpyCH4III ACNGT 8 cut(s) 156, 1176, 1306, 1312, 1338, 2125, 3141, 3247
HpyCH4IV ACGT 7 cut(s) 125, 140, 362, 1200, 1642, 2809, 2849
HpyF10VI GCNNNNNNNGC 9 cut(s) 341, 584, 647, 1603, 1929, 1933, 1938, 2618, 2859
HpyF3I CTNAG 8 cut(s) 20, 251, 1043, 1588, 1630, 1825, 2398, 3075
HpySE526I ACGT 7 cut(s) 125, 140, 362, 1200, 1642, 2809, 2849
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 2 cut(s) 176, 731
Kpn2I TCCGGA 1 cut(s) 388
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Ksp22I TGATCA 2 cut(s) 945, 1224
LmnI GCTCC 8 cut(s) 235, 291, 572, 1192, 1408, 1570, 2858, 3193
Lsp1109I GCAGC 7 cut(s) 562, 634, 821, 2461, 2605, 2745, 2957
LweI GCATC 5 cut(s) 1225, 2205, 2944, 3120, 3268
MabI ACCWGGT 1 cut(s) 885
MaeII ACGT 7 cut(s) 125, 140, 362, 1200, 1642, 2809, 2849
MaeIII GTNAC 9 cut(s) 116, 749, 1306, 1376, 1390, 1489, 1737, 2605, 2971
MfeI CAATTG 2 cut(s) 1144, 2016
MflI RGATCY 4 cut(s) 475, 1054, 1479, 2092
MhlI GDGCHC 3 cut(s) 63, 1509, 2855
MlyI GAGTC 4 cut(s) 379, 448, 2285, 2861
MmeI TCCRAC 5 cut(s) 161, 438, 1214, 1323, 2326
Mph1103I ATGCAT 1 cut(s) 3135
MreI CGCCGGCG 1 cut(s) 178
MroI TCCGGA 1 cut(s) 388
MroNI GCCGGC 1 cut(s) 178
MroXI GAANNNNTTC 2 cut(s) 690, 2524
MseI TTAA 2 cut(s) 768, 1802
MslI CAYNNNNRTG 5 cut(s) 1260, 1388, 2230, 2916, 3041
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 9 cut(s) 78, 101, 179, 263, 278, 389, 1745, 1952, 2648
MspR9I CCNGG 4 cut(s) 279, 887, 1545, 3179
MunI CAATTG 2 cut(s) 1144, 2016
MvaI CCWGG 3 cut(s) 887, 1545, 3179
MwoI GCNNNNNNNGC 9 cut(s) 341, 584, 647, 1603, 1929, 1933, 1938, 2618, 2859
NaeI GCCGGC 1 cut(s) 180
NciI CCSGG 1 cut(s) 279
NcoI CCATGG 5 cut(s) 934, 981, 1320, 1680, 3011
NgoMIV GCCGGC 1 cut(s) 178
NheI GCTAGC 1 cut(s) 2381
NlaIV GGNNCC 3 cut(s) 1363, 1481, 3189
NmeAIII GCCGAG 2 cut(s) 42, 462
NmuCI GTSAC 7 cut(s) 749, 1306, 1376, 1390, 1489, 1737, 2971
NsiI ATGCAT 1 cut(s) 3135
NspI RCATGY 6 cut(s) 133, 242, 1187, 1991, 2229, 2637
NspV TTCGAA 2 cut(s) 107, 1351
OliI CACNNNNGTG 1 cut(s) 3041
PaeI GCATGC 1 cut(s) 2637
PaqCI CACCTGC 1 cut(s) 292
PceI AGGCCT 1 cut(s) 1830
PciI ACATGT 1 cut(s) 129
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 146
PdiI GCCGGC 1 cut(s) 180
PdmI GAANNNNTTC 2 cut(s) 690, 2524
Pfl23II CGTACG 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 1412
PinAI ACCGGT 1 cut(s) 1951
Ple19I CGATCG 1 cut(s) 225
PleI GAGTC 4 cut(s) 379, 447, 2284, 2861
PpsI GAGTC 4 cut(s) 379, 447, 2284, 2861
Ppu21I YACGTR 2 cut(s) 363, 2850
PscI ACATGT 1 cut(s) 129
PshBI ATTAAT 1 cut(s) 768
PsiI TTATAA 3 cut(s) 876, 2585, 2766
Psp6I CCWGG 3 cut(s) 885, 1543, 3177
PspEI GGTNACC 1 cut(s) 1737
PspGI CCWGG 3 cut(s) 885, 1543, 3177
PspLI CGTACG 1 cut(s) 359
PspN4I GGNNCC 3 cut(s) 1363, 1481, 3189
PspPI GGNCC 6 cut(s) 347, 796, 894, 1520, 1592, 2960
PstI CTGCAG 2 cut(s) 652, 811
PstNI CAGNNNCTG 1 cut(s) 2129
PsuI RGATCY 4 cut(s) 475, 1054, 1479, 2092
PvuI CGATCG 1 cut(s) 225
RsaI GTAC 9 cut(s) 128, 188, 203, 361, 513, 539, 955, 2298, 3143
RsaNI GTAC 9 cut(s) 127, 187, 202, 360, 512, 538, 954, 2297, 3142
RseI CAYNNNNRTG 5 cut(s) 1260, 1388, 2230, 2916, 3041
SaqAI TTAA 2 cut(s) 768, 1802
Sau96I GGNCC 6 cut(s) 347, 796, 894, 1520, 1592, 2960
SchI GAGTC 4 cut(s) 379, 448, 2285, 2861
ScrFI CCNGG 4 cut(s) 279, 887, 1545, 3179
SduI GDGCHC 3 cut(s) 63, 1509, 2855
SexAI ACCWGGT 1 cut(s) 885
SfaNI GCATC 5 cut(s) 1225, 2205, 2944, 3120, 3268
SfcI CTRYAG 4 cut(s) 648, 734, 807, 3226
SfuI TTCGAA 2 cut(s) 107, 1351
SgrAI CRCCGGYG 1 cut(s) 178
SinI GGWCC 5 cut(s) 347, 796, 894, 1520, 1592
SmiMI CAYNNNNRTG 5 cut(s) 1260, 1388, 2230, 2916, 3041
SmlI CTYRAG 3 cut(s) 353, 1274, 1484
SmoI CTYRAG 3 cut(s) 353, 1274, 1484
SnaBI TACGTA 1 cut(s) 363
SpeI ACTAGT 2 cut(s) 2341, 2602
SphI GCATGC 1 cut(s) 2637
SseBI AGGCCT 1 cut(s) 1830
SspI AATATT 1 cut(s) 1845
StuI AGGCCT 1 cut(s) 1830
StyD4I CCNGG 4 cut(s) 277, 885, 1543, 3177
StyI CCWWGG 7 cut(s) 934, 981, 1320, 1680, 1733, 3011, 3183
TaaI ACNGT 8 cut(s) 156, 1176, 1306, 1312, 1338, 2125, 3141, 3247
TaiI ACGT 7 cut(s) 128, 143, 365, 1203, 1645, 2812, 2852
TaqII GACCGA 2 cut(s) 737, 2318
TatI WGTACW 1 cut(s) 511
TauI GCSGC 3 cut(s) 320, 928, 2221
Tru1I TTAA 2 cut(s) 768, 1802
Tru9I TTAA 2 cut(s) 768, 1802
TscAI CASTG 4 cut(s) 48, 1227, 1315, 2217
TseFI GTSAC 7 cut(s) 749, 1306, 1376, 1390, 1489, 1737, 2971
TseI GCWGC 7 cut(s) 575, 647, 809, 2474, 2618, 2733, 2945
Tsp45I GTSAC 7 cut(s) 749, 1306, 1376, 1390, 1489, 1737, 2971
TspGWI ACGGA 3 cut(s) 1928, 2065, 3180
TspRI CASTG 4 cut(s) 48, 1227, 1315, 2217
Van91I CCANNNNNTGG 1 cut(s) 1412
VpaK11BI GGWCC 5 cut(s) 347, 796, 894, 1520, 1592
VspI ATTAAT 1 cut(s) 768
XagI CCTNNNNNAGG 1 cut(s) 1440
XapI RAATTY 3 cut(s) 1999, 2830, 3200
XceI RCATGY 6 cut(s) 133, 242, 1187, 1991, 2229, 2637
XcmI CCANNNNNNNNNTGG 1 cut(s) 2915
XmiI GTMKAC 2 cut(s) 1660, 2659
XmnI GAANNNNTTC 2 cut(s) 690, 2524
Zsp2I ATGCAT 1 cut(s) 3135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.