Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004347

Physical Location & Seq

Genomic Coordinates Forward (+)

1836517 .. 1839880

Gene Structure 3364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGAGCTACACCTCCTCCGCTCCCCTGTATCGACCCCAACTCTCTACTCCGACCACACCCACAAGCGAAACCCACCAATCCAGTGTCTCCGTCTATCCAAACGGAGCTCCGGCCCGTTTACACAGAAGGAGCTTTCTCGGATTCTGAGAACGGAGGCTGCTGTTAAAAACATTGAGAGGAAAGCAAACTCCAACAAGTACAACAACCTCTGGCCTAAGCCTGTTTTGGAGGCCCTTGATGAGGCTATTTCCAACAATCTCTGGGAGAATGCTCTCAAGATATTTGGGCTACTGCGTAAGCAACATTGGTATGAGCCGAGATGCCAAACTTACGCAAAATTGTTCATGATGCTTGGAAAGTGCAAGCAACCTGAGCAGGTTGGGTTACTTTTCGAGCTCATGTTAACTGATGGGCTCAAACCAACTGTTGACGTGTACACAGCTCTTGTTAGTGTTTATGGCAAAAGTGGTCTCTTTGACAAGGCATTCTCTACTGTTGATGACATGAAGTCAATTTCTGACTGCAAACCAGATGTATATACATATTCCATTCTTATAAATTGCTGCACCAAATTTCGTCGCTATGATCTGATTGAACAAGTTTTGGCTGAGATGTCATTTCTGGGAATTGGGTGTAACACAGTCATATACAACAATCTTATCGATGGATATGGTAAATCAGAATTGTTTGAACTGATGGAGGACTCATTGACAGATATGATTGAAAGTGGCAACTGCGTTCCTGATGTTTTCACATTCAACTCTTTTCTTGGTGCTTATGGGAAAAGTGGGCAGATAGACAAGATGGAGAAGTGGTACGATGAATTTCAGCTAATGGGAATGAAGCCAGACCTCAAGACATTTAATATCCTGATTAAAGCATATGGGAAAGCAAGAATGTTTGAAAAGATGGGATCTATTATGGAGTTTATGAAGAAAAGGTATTTCACTCCAACTGTTGTTACTTATAACATTGTTATTGAGGTATTTGGGAAAGCTGGAAAGATTGTGAAGATGGAGGAATACTTCAGAAACATGAAGCACCAAGGAATGAAGCCTAACTCTATTACATATTGTTCACTCATTAGTGCGTACAGCAAAGCTGGGAATATTAAGAAAGTTGATTCTATTTTGAGGCAAGTAGAGAATTCAGATGTTATACTAGATACAGCTTTTTTCAACTGTATTATTAGTGCCTATGGTCGGGCTGGTGATATAAATAAGATGGGTGAATTATTTTTGACAATGGAAGAGAAAAAATGTGTTCCTGACCATATCACCTTTGCTACCATGATCCAAGCCTGCAAGGCACTAGGCATGACTGCTGCTGCCGAAGATTTGAAAAAAAGGATGATTACCACCATTGACCATTCAGAAATGGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

463

Amino Acids

52.76

Weight (kDa)

8.52

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	141 - 190	1.2e-12	PPR repeat family
PPR_3	PF13812	167 - 226	5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	213 - 257	6.4e-07	PPR repeat family
PPR_2	PF13041	248 - 296	8.2e-12	PPR repeat family
PPR_3	PF13812	274 - 332	1.1e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	287 - 328	1.3e-08	PPR repeat family
TPR_24	PF23276	307 - 411	1.5e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	318 - 367	3e-13	PPR repeat family
PPR_3	PF13812	376 - 435	4.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	389 - 435	1.2e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53170 AT3G53170 AT3G53170 AT3G53170
fragaria_vesca	FvH4_7g01420
malus_domestica	MD02G1305700.v1.1 MD02G1306000.v1.1
prunus_persica	Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1
pyrus_communis	pycom02g25620
rosa_chinensis	RchiOBHm_Chr1g0317271
rosa_laevigata	RLG00000029578 RLG00000030614 RLG00000030617
rosa_multiflora	Rmu_sc0005698.1_g000002 Rmu_sc0007593.1_g000003
rosa_roxburghii	Rroxscaffold_4G00327510 Rroxscaffold_4G00330560
rosa_rugosa	Rorug01G0015300 Rorug01G0015400 Rorug01G0015400
rosa_samantha	Rh1AG026400 Rh1BG022700 Rh1CG024600 Rh1CG049800 Rh1DG047300 Rh1DG054300
rosa_wichuraiana	Rw1G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	557, 969
Acc36I	ACCTGC	1 cut(s)	367
AccBSI	CCGCTC	1 cut(s)	21
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	2 cut(s)	922, 1288
AcsI	RAATTY	3 cut(s)	572, 824, 1147
AcuI	CTGAAG	1 cut(s)	1012
AfaI	GTAC	4 cut(s)	200, 437, 818, 1094
AfiI	CCNNNNNNNGG	2 cut(s)	241, 1203
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	7 cut(s)	596, 692, 725, 760, 905, 1180, 1342
AhdI	GACNNNNNGTC	1 cut(s)	508
AjiI	CACGTC	1 cut(s)	433
AluBI	AGCT	9 cut(s)	7, 108, 133, 397, 443, 832, 998, 1103, 1172
AluI	AGCT	9 cut(s)	7, 108, 133, 397, 443, 832, 998, 1103, 1172
Alw21I	GWGCWC	2 cut(s)	110, 399
Alw26I	GTCTC	2 cut(s)	92, 476
AlwI	GGATC	2 cut(s)	922, 1288
AoxI	GGCC	3 cut(s)	112, 212, 231
ApeKI	GCWGC	4 cut(s)	158, 564, 1325, 1328
ApoI	RAATTY	3 cut(s)	572, 824, 1147
AspS9I	GGNCC	2 cut(s)	113, 232
AsuHPI	GGTGA	3 cut(s)	1223, 1241, 1270
BanII	GRGCYC	3 cut(s)	110, 399, 417
Bbv12I	GWGCWC	2 cut(s)	110, 399
BbvI	GCAGC	4 cut(s)	145, 551, 1312, 1315
BccI	CCATC	7 cut(s)	404, 659, 691, 799, 904, 1009, 1219
BcoDI	GTCTC	2 cut(s)	92, 476
BfaI	CTAG	2 cut(s)	1163, 1313
BfuAI	ACCTGC	1 cut(s)	367
BglI	GCCNNNNNGGC	1 cut(s)	1307
BisI	GCNGC	4 cut(s)	159, 565, 1326, 1329
BlsI	GCNGC	4 cut(s)	160, 566, 1327, 1330
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	113, 232
BmsI	GCATC	2 cut(s)	311, 339
Bpu10I	CCTNAGC	2 cut(s)	216, 372
BpuEI	CTTGAG	2 cut(s)	260, 839
Bsa29I	ATCGAT	1 cut(s)	663
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	1045
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 800, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 1203
Bse1I	ACTGG	1 cut(s)	82
BseCI	ATCGAT	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	1045
BseGI	GGATG	1 cut(s)	1356
BseLI	CCNNNNNNNGG	2 cut(s)	241, 1203
BseMII	CTCAG	3 cut(s)	137, 363, 600
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	4 cut(s)	145, 551, 1312, 1315
BseYI	CCCAGC	1 cut(s)	1103
BsgI	GTGCAG	1 cut(s)	550
BshFI	GGCC	3 cut(s)	114, 214, 233
BshVI	ATCGAT	1 cut(s)	663
BsiHKAI	GWGCWC	2 cut(s)	110, 399
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	241, 1203
BsmAI	GTCTC	2 cut(s)	92, 476
BsmI	GAATGC	2 cut(s)	274, 485
BsnI	GGCC	3 cut(s)	114, 214, 233
Bso31I	GGTCTC	1 cut(s)	476
Bsp1286I	GDGCHC	3 cut(s)	110, 399, 417
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	586, 914, 1293
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	114, 214, 233
BspCNI	CTCAG	3 cut(s)	138, 364, 601
BspDI	ATCGAT	1 cut(s)	663
BspHI	TCATGA	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	2 cut(s)	922, 1288
BspTNI	GGTCTC	1 cut(s)	476
BsrBI	CCGCTC	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	1045
BssMI	GATC	3 cut(s)	586, 914, 1293
BssT1I	CCWWGG	1 cut(s)	1045
Bst4CI	ACNGT	5 cut(s)	427, 496, 643, 958, 1184
Bst6I	CTCTTC	1 cut(s)	1245
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	365, 1303
BstDEI	CTNAG	4 cut(s)	146, 216, 372, 609
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	1356
BstKTI	GATC	3 cut(s)	589, 917, 1296
BstMAI	GTCTC	2 cut(s)	92, 476
BstMBI	GATC	3 cut(s)	586, 914, 1293
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 1307
BstV1I	GCAGC	4 cut(s)	145, 551, 1312, 1315
BstX2I	RGATCY	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	914
Bsu15I	ATCGAT	1 cut(s)	663
BsuRI	GGCC	3 cut(s)	114, 214, 233
BsuTUI	ATCGAT	1 cut(s)	663
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	1356
BtsIMutI	CAGTG	1 cut(s)	89
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	365, 1303
CciI	TCATGA	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	113, 232
ClaI	ATCGAT	1 cut(s)	663
Csp6I	GTAC	4 cut(s)	199, 436, 817, 1093
CviAII	CATG	6 cut(s)	346, 400, 505, 1036, 1291, 1318
CviQI	GTAC	4 cut(s)	199, 436, 817, 1093
DdeI	CTNAG	4 cut(s)	146, 216, 372, 609
DpnI	GATC	3 cut(s)	588, 916, 1295
DpnII	GATC	3 cut(s)	586, 914, 1293
DriI	GACNNNNNGTC	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	1245
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	1245
Ecl136II	GAGCTC	2 cut(s)	108, 397
Eco130I	CCWWGG	1 cut(s)	1045
Eco24I	GRGCYC	3 cut(s)	110, 399, 417
Eco31I	GGTCTC	1 cut(s)	476
Eco53kI	GAGCTC	2 cut(s)	108, 397
Eco57I	CTGAAG	1 cut(s)	1012
EcoICRI	GAGCTC	2 cut(s)	108, 397
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	1147
EcoT14I	CCWWGG	1 cut(s)	1045
EcoT38I	GRGCYC	3 cut(s)	110, 399, 417
ErhI	CCWWGG	1 cut(s)	1045
FaeI	CATG	6 cut(s)	349, 403, 508, 1039, 1294, 1321
FatI	CATG	6 cut(s)	345, 399, 504, 1035, 1290, 1317
FauNDI	CATATG	1 cut(s)	883
Fnu4HI	GCNGC	4 cut(s)	159, 565, 1326, 1329
FokI	GGATG	1 cut(s)	1363
FriOI	GRGCYC	3 cut(s)	110, 399, 417
Fsp4HI	GCNGC	4 cut(s)	159, 565, 1326, 1329
FspBI	CTAG	2 cut(s)	1163, 1313
GluI	GCNGC	4 cut(s)	159, 565, 1326, 1329
GsaI	CCCAGC	1 cut(s)	1107
HaeIII	GGCC	3 cut(s)	114, 214, 233
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	6 cut(s)	349, 403, 508, 1039, 1294, 1321
HincII	GTYRAC	2 cut(s)	405, 430
HindII	GTYRAC	2 cut(s)	405, 430
HinfI	GANTC	3 cut(s)	142, 704, 1124
HpaI	GTTAAC	1 cut(s)	405
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	3 cut(s)	1223, 1241, 1270
Hpy166II	GTNNAC	6 cut(s)	120, 405, 430, 436, 438, 1079
Hpy188I	TCNGA	9 cut(s)	52, 141, 147, 520, 591, 682, 1031, 1153, 1375
Hpy188III	TCNNGA	6 cut(s)	277, 346, 743, 856, 871, 1268
Hpy8I	GTNNAC	6 cut(s)	120, 405, 430, 436, 438, 1079
Hpy99I	CGWCG	1 cut(s)	582
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	5 cut(s)	427, 496, 643, 958, 1184
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	4 cut(s)	363, 525, 567, 1305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 1307
HpyF3I	CTNAG	4 cut(s)	146, 216, 372, 609
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	6 cut(s)	349, 403, 508, 1039, 1294, 1321
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	586, 914, 1293
LmnI	GCTCC	5 cut(s)	4, 26, 105, 113, 130
Lsp1109I	GCAGC	4 cut(s)	145, 551, 1312, 1315
LweI	GCATC	2 cut(s)	311, 339
MaeI	CTAG	2 cut(s)	1163, 1313
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	384, 635, 961
MalI	GATC	3 cut(s)	588, 916, 1295
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	3 cut(s)	586, 914, 1293
MboII	GAAGA	4 cut(s)	946, 1024, 1262, 1346
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	3 cut(s)	110, 399, 417
MluCI	AATT	9 cut(s)	338, 513, 559, 572, 627, 683, 824, 1147, 1232
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	4 cut(s)	75, 216, 276, 977
MseI	TTAA	5 cut(s)	165, 404, 864, 876, 1113
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	1 cut(s)	111
Mva1269I	GAATGC	2 cut(s)	274, 485
MwoI	GCNNNNNNNGC	2 cut(s)	373, 1307
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	3 cut(s)	586, 914, 1293
NlaIII	CATG	6 cut(s)	349, 403, 508, 1039, 1294, 1321
NmeAIII	GCCGAG	1 cut(s)	342
PagI	TCATGA	1 cut(s)	345
PctI	GAATGC	2 cut(s)	274, 485
PfeI	GAWTC	2 cut(s)	142, 1124
PkrI	GCNGC	4 cut(s)	160, 566, 1327, 1330
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
PsiI	TTATAA	2 cut(s)	557, 969
Psp124BI	GAGCTC	2 cut(s)	110, 399
PspFI	CCCAGC	1 cut(s)	1103
PspPI	GGNCC	2 cut(s)	113, 232
PsuI	RGATCY	1 cut(s)	914
RsaI	GTAC	4 cut(s)	200, 437, 818, 1094
RsaNI	GTAC	4 cut(s)	199, 436, 817, 1093
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	2 cut(s)	110, 399
SaqAI	TTAA	5 cut(s)	165, 404, 864, 876, 1113
SatI	GCNGC	4 cut(s)	159, 565, 1326, 1329
Sau3AI	GATC	3 cut(s)	586, 914, 1293
Sau96I	GGNCC	2 cut(s)	113, 232
SchI	GAGTC	1 cut(s)	698
SduI	GDGCHC	3 cut(s)	110, 399, 417
SfaNI	GCATC	2 cut(s)	311, 339
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	275, 854
SmoI	CTYRAG	2 cut(s)	275, 854
Sse9I	AATT	9 cut(s)	338, 513, 559, 572, 627, 683, 824, 1147, 1232
SsiI	CCGC	1 cut(s)	19
SspI	AATATT	1 cut(s)	1111
SspMI	CTAG	2 cut(s)	1163, 1313
SstI	GAGCTC	2 cut(s)	110, 399
StyI	CCWWGG	1 cut(s)	1045
TaaI	ACNGT	5 cut(s)	427, 496, 643, 958, 1184
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	32, 393, 663
TasI	AATT	9 cut(s)	338, 513, 559, 572, 627, 683, 824, 1147, 1232
TatI	WGTACW	2 cut(s)	198, 435
TfiI	GAWTC	2 cut(s)	142, 1124
Tru1I	TTAA	5 cut(s)	165, 404, 864, 876, 1113
Tru9I	TTAA	5 cut(s)	165, 404, 864, 876, 1113
TscAI	CASTG	1 cut(s)	89
TseI	GCWGC	4 cut(s)	158, 564, 1325, 1328
TspDTI	ATGAA	7 cut(s)	334, 521, 837, 857, 947, 1052, 1067
TspGWI	ACGGA	3 cut(s)	80, 118, 167
TspRI	CASTG	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	3 cut(s)	572, 824, 1147
XspI	CTAG	2 cut(s)	1163, 1313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.