Rh1CG049800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004347
Physical Location & Seq
Reverse (-)
9182869 .. 9184493
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG049800.1

Sequence Viewer

Length: 1041 bp
ATGATGCTTGGAAAGTGCAAGCAACCTGAGCAAGCTGGCTTACTTTTCGAGCTCATGTTAACTGATGGGCTCAAACCAACTGTTGATGTCTACACAGCTCTTGTTAGTGTTTATTGCAAAAGTGGCCTCTTTGACAAGGCGTTCTCTACTGTTGATGATATGAAGTCAATATCCGATTGCAAACCAGATGTGTATACATATTCAATTCTTATAAATTGCTGCACTAAATTCCGTCACTATGATCTGATTGAGCAAGTTCTGGCTGAGATGTCATATCTGGGAATTGGATGTAACACAGTCATATACAATACTCTTATCGATGGTTATGGTAAAGCTGAAATGTTTGAACTGATGGAGGACTCATTGACAGATATGATTGAAAGTGGCAGCTGCCTTCCTGATGTTTTCACATTCAATTCTTTTCTTGGCGCTTATGGGAAAAGTGGGCAGATAGACAAGATGGAGAAGTGGTGTGATGAATTTCAGCTAATGGGAATAAAGCCAGACCTTAAGACATTTAATGTCCTGATTAAATCATATGGGAAAGCAAGAATGTATGAAAAGATGGGGTCTGTTATGGAGTTTATGGAGAAAAGGTATTTCACCCCAACTGTTGTTACTTATAACATAGTAATTGAGGTATTTGGGAAAGCTGGAAATATTGTGAAGATGGAGGAATACTTCAGAAAAATGAAGCACCAAGGAATGAAGCCCAGCTCTATTACTTATTGTTCCCTCGTTAGTGCGTACAGCAAAGCTGGGAATATAAATAAAGTTGATTCCATTTTGAGGCAAGTAGAGAATTCAGATGTTATACTTGATACAGCTTTTTTCAACTGTATTATTAGTGCTTATGGTCGGGCTGGTGATATAAATAAGATGGCTGAATTATTTTTGACCATGGAAGAGAAAAAATGTGTTCCTGATCATATCACCTTTGCTACCATGATCCAAGCCTGCAATGCACAAGGCATGACTGCGGCTGTTGAAGATATAAAAAACAGGATGATTACCCCCAATGACAGTTCAGGACAAGGTTGA

Protein Analysis

346

Amino Acids

38.85

Weight (kDa)

5.22

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 15 - 75 4.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 22 - 55 5e-08 PPR repeat
PPR_2 PF13041 26 - 75 2.5e-14 PPR repeat family
PPR PF01535 30 - 56 6.8e-06 PPR repeat
PPR_3 PF13812 52 - 111 8.1e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 98 - 141 1.6e-07 PPR repeat family
PPR_2 PF13041 133 - 181 2.7e-10 PPR repeat family
PPR_3 PF13812 159 - 217 4.4e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 172 - 213 7.9e-08 PPR repeat family
TPR_24 PF23276 191 - 298 9e-09 Fungal tetratrico peptide repeats
PPR_2 PF13041 203 - 252 8.6e-12 PPR repeat family
PPR PF01535 206 - 235 3.8e-06 PPR repeat
PPR_3 PF13812 261 - 320 9.8e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 274 - 320 5.8e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 212, 624
AccI GTMKAC 2 cut(s) 90, 194
AciI CCGC 1 cut(s) 980
AclWI GGATC 1 cut(s) 943
AcsI RAATTY 3 cut(s) 227, 479, 802
AcuI CTGAAG 1 cut(s) 667
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 1 cut(s) 789
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 6 cut(s) 204, 347, 380, 415, 835, 989
Alw21I GWGCWC 1 cut(s) 54
AlwI GGATC 1 cut(s) 943
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 219, 387, 390
ApoI RAATTY 3 cut(s) 227, 479, 802
AspLEI GCGC 1 cut(s) 431
AsuHPI GGTGA 3 cut(s) 595, 878, 925
BanII GRGCYC 2 cut(s) 54, 72
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 3 cut(s) 206, 377, 399
BccI CCATC 7 cut(s) 59, 314, 346, 454, 559, 664, 874
BclI TGATCA 1 cut(s) 925
BfoI RGCGCY 1 cut(s) 432
BfrI CTTAAG 1 cut(s) 509
BisI GCNGC 4 cut(s) 220, 388, 391, 981
BlsI GCNGC 4 cut(s) 221, 389, 392, 982
Bpu10I CCTNAGC 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 700, 900
BsaXI ACNNNNNCTCC 4 cut(s) 455, 485, 581, 611
Bsc4I CCNNNNNNNGG 1 cut(s) 789
Bse3DI GCAATG 1 cut(s) 967
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 700, 900
BseGI GGATG 2 cut(s) 293, 1011
BseLI CCNNNNNNNGG 1 cut(s) 789
BseMI GCAATG 1 cut(s) 967
BseMII CTCAG 2 cut(s) 18, 255
BseXI GCAGC 3 cut(s) 206, 377, 399
BseYI CCCAGC 2 cut(s) 713, 758
BsgI GTGCAG 1 cut(s) 205
BshFI GGCC 1 cut(s) 126
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 789
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 54, 72
Bsp143I GATC 3 cut(s) 241, 925, 948
Bsp19I CCATGG 1 cut(s) 900
BspACI CCGC 1 cut(s) 980
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 19, 256
BspDI ATCGAT 1 cut(s) 318
BspPI GGATC 1 cut(s) 943
BspTI CTTAAG 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 967
BssECI CCNNGG 2 cut(s) 700, 900
BssMI GATC 3 cut(s) 241, 925, 948
BssNAI GTATAC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 700, 900
Bst1107I GTATAC 1 cut(s) 195
Bst4CI ACNGT 6 cut(s) 82, 151, 298, 613, 839, 1025
Bst6I CTCTTC 1 cut(s) 900
BstAFI CTTAAG 1 cut(s) 509
BstC8I GCNNGC 4 cut(s) 20, 33, 37, 958
BstDEI CTNAG 2 cut(s) 27, 264
BstDSI CCRYGG 1 cut(s) 900
BstF5I GGATG 2 cut(s) 293, 1011
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 3 cut(s) 244, 928, 951
BstMBI GATC 3 cut(s) 241, 925, 948
BstMWI GCNNNNNNNGC 3 cut(s) 28, 123, 962
BstV1I GCAGC 3 cut(s) 206, 377, 399
BstZ17I GTATAC 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 318
BsuRI GGCC 1 cut(s) 126
BsuTUI ATCGAT 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 900
BtsCI GGATG 2 cut(s) 293, 1011
Cac8I GCNNGC 4 cut(s) 20, 33, 37, 958
CfoI GCGC 1 cut(s) 431
ClaI ATCGAT 1 cut(s) 318
Csp6I GTAC 1 cut(s) 748
CviAII CATG 4 cut(s) 55, 901, 946, 973
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 2 cut(s) 27, 264
DpnI GATC 3 cut(s) 243, 927, 950
DpnII GATC 3 cut(s) 241, 925, 948
Eam1104I CTCTTC 1 cut(s) 900
EarI CTCTTC 1 cut(s) 900
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 700, 900
Eco24I GRGCYC 2 cut(s) 54, 72
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 667
EcoICRI GAGCTC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 802
EcoT14I CCWWGG 2 cut(s) 700, 900
EcoT38I GRGCYC 2 cut(s) 54, 72
ErhI CCWWGG 2 cut(s) 700, 900
FaeI CATG 4 cut(s) 58, 904, 949, 976
FatI CATG 4 cut(s) 54, 900, 945, 972
FauNDI CATATG 1 cut(s) 538
FbaI TGATCA 1 cut(s) 925
FblI GTMKAC 2 cut(s) 90, 194
Fnu4HI GCNGC 4 cut(s) 220, 388, 391, 981
FokI GGATG 2 cut(s) 300, 1018
FriOI GRGCYC 2 cut(s) 54, 72
Fsp4HI GCNGC 4 cut(s) 220, 388, 391, 981
GlaI GCGC 1 cut(s) 430
GluI GCNGC 4 cut(s) 220, 388, 391, 981
GsaI CCCAGC 2 cut(s) 717, 762
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 1 cut(s) 126
HhaI GCGC 1 cut(s) 431
Hin1II CATG 4 cut(s) 58, 904, 949, 976
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 2 cut(s) 359, 779
HpaI GTTAAC 1 cut(s) 60
HphI GGTGA 3 cut(s) 595, 878, 925
Hpy166II GTNNAC 3 cut(s) 60, 91, 195
Hpy188I TCNGA 4 cut(s) 175, 246, 686, 808
Hpy188III TCNNGA 4 cut(s) 398, 526, 923, 1029
Hpy8I GTNNAC 3 cut(s) 60, 91, 195
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 6 cut(s) 82, 151, 298, 613, 839, 1025
HpyCH4V TGCA 6 cut(s) 18, 117, 180, 222, 960, 965
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 123, 962
HpyF3I CTNAG 2 cut(s) 27, 264
Hsp92II CATG 4 cut(s) 58, 904, 949, 976
HspAI GCGC 1 cut(s) 429
Ksp22I TGATCA 1 cut(s) 925
KspAI GTTAAC 1 cut(s) 60
Kzo9I GATC 3 cut(s) 241, 925, 948
Lsp1109I GCAGC 3 cut(s) 206, 377, 399
MaeIII GTNAC 3 cut(s) 233, 290, 616
MalI GATC 3 cut(s) 243, 927, 950
MboI GATC 3 cut(s) 241, 925, 948
MboII GAAGA 3 cut(s) 679, 917, 1001
MhlI GDGCHC 2 cut(s) 54, 72
MluCI AATT 9 cut(s) 204, 214, 227, 282, 415, 479, 633, 802, 887
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 6 cut(s) 137, 349, 631, 667, 746, 783
MseI TTAA 4 cut(s) 59, 510, 519, 531
MspA1I CMGCKG 1 cut(s) 390
MspCI CTTAAG 1 cut(s) 509
MwoI GCNNNNNNNGC 3 cut(s) 28, 123, 962
NcoI CCATGG 1 cut(s) 900
NdeI CATATG 1 cut(s) 538
NdeII GATC 3 cut(s) 241, 925, 948
NlaIII CATG 4 cut(s) 58, 904, 949, 976
NmuCI GTSAC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 779
PkrI GCNGC 4 cut(s) 221, 389, 392, 982
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PsiI TTATAA 2 cut(s) 212, 624
Psp124BI GAGCTC 1 cut(s) 54
PspFI CCCAGC 2 cut(s) 713, 758
PvuII CAGCTG 1 cut(s) 390
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 4 cut(s) 59, 510, 519, 531
SatI GCNGC 4 cut(s) 220, 388, 391, 981
Sau3AI GATC 3 cut(s) 241, 925, 948
SchI GAGTC 1 cut(s) 353
SduI GDGCHC 2 cut(s) 54, 72
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 9 cut(s) 204, 214, 227, 282, 415, 479, 633, 802, 887
SsiI CCGC 1 cut(s) 980
SspI AATATT 1 cut(s) 661
SstI GAGCTC 1 cut(s) 54
StyI CCWWGG 2 cut(s) 700, 900
TaaI ACNGT 6 cut(s) 82, 151, 298, 613, 839, 1025
TaqI TCGA 2 cut(s) 48, 318
TasI AATT 9 cut(s) 204, 214, 227, 282, 415, 479, 633, 802, 887
TauI GCSGC 1 cut(s) 983
TfiI GAWTC 1 cut(s) 779
Tru1I TTAA 4 cut(s) 59, 510, 519, 531
Tru9I TTAA 4 cut(s) 59, 510, 519, 531
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 3 cut(s) 219, 387, 390
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 5 cut(s) 176, 492, 573, 707, 722
TspGWI ACGGA 1 cut(s) 221
Vha464I CTTAAG 1 cut(s) 509
XapI RAATTY 3 cut(s) 227, 479, 802
XmiI GTMKAC 2 cut(s) 90, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.