Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004347

Physical Location & Seq

Genomic Coordinates Forward (+)

1963252 .. 1970599

Gene Structure 7348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G019900.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGAGCCACACCTCCTTCACCCCACTAACCTGCGCTTTTCAACCTCAACCTCCTTAACCTCTGCCACATATTCGATAACACTCTGCGGTGAACATGCCCATAAACGAAACCCAACAATCCATTGTCTTCATTTATCGAAACGGAGCTCCAACCCGTCTTTGAAGGCCAAAAAGGAGCTTTCTCGACTTCTGAGAACAGACGCTGCTGTTAGAAACATTGAGAAGAAAGCAAATTCCAACAAGTACAATAACCTTTGGCCCAAGGCTGTTTTGGAGGCTCTGGACGAAGCTATTGCAAACAATCTGTGGGAAAGTGCTCTTAAGATTTTTGGACTACTACGTAAGCAACACTGGTATGAGCCGAGATGCCAAACATACACTAAGCTGCTGATGATGCTTGGCAAGTGCAGGCAACCTGAGCAGGCCAGCTTGCTTTTCGAGCTCATGTTAAGTGATGGGCTAACACCTACTGTTGACGTCTACACTGCTCTTGTTAGTGTTTATGGAAAAAGTGGCCTCCTTGACAAGGCGTTCTCTACTGTCGATGATATGAAGTCAGTTTCTGACTGCAAACCAGATGTATATACATATTCTATTCTTATTAATTCCTGCACCAAATTCAATCGTCCTGATCTGATTGAAGAAGTTCTGGCTGAGATGTCATATCTGGGGATTGGATGCAACACAGTCATATACAATACTCTAATTGATGGCTATGGTAAGGCTGAAATGTTTGAACTGATGGAGGACTCGTTGACAGACATGATTGAAAGTGGCAGCTGCCTTCCTGATGTTTTCACATTAAATTCTTTTCTTGGGGCTTATGGGAAATGTGGACAGATAGAGAAGATGGAGAAGTGGTATGATGAATTTCAGCTGATGGGAATAAGGCCAGACCCTAAGACATTTAATATCCTGATTAAATCATATGGGAAAGCAACAATGTACGAAAAGATGGGGTCTGTTATGGAGTTTATGAAGAAAAGGTTTTTCTCCCCAACTGTTGTTACTTATAATATTGTAATTGAGGTATTTGGGAAAGCTGGAAATGTTGAGAAGATGGGCGAATACTTCAGAAAAATGAAGTATCAAGGAATGAAGCCTAACTCTATCACCTATTGTTCTCTTGTTAGTGCGTATAGCAAAGCTGGGCATATGAGTAAAGTTGATTCCATTTTGAGGCAAGTAGAGAATTCGGATGTTATACTGGATACGCCTTTCTTCAACTGTATTATTAGTGCTTATGGTCGGGCTGGTGATGTAAGAAAGGTGAGCGAATTGTTTTTGGCAATGAAAGAAAAAAAATGTTTGCCTGACCATATCACCTTTGCTACCATGATCCAAGCCTACAATGCACGAGGCATGACTGAGGCTGCTGAGGACTTACAGAAAAGGATGATTACCAACACGGAAAATTCAGGCACAAGGTTGATTGGATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

481

Amino Acids

54.25

Weight (kDa)

8.5

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53170 AT3G53170 AT3G53170 AT3G53170
fragaria_vesca	FvH4_7g01420
malus_domestica	MD02G1305700.v1.1 MD02G1306000.v1.1
prunus_persica	Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1
pyrus_communis	pycom02g25620
rosa_chinensis	RchiOBHm_Chr1g0317271
rosa_laevigata	RLG00000029578 RLG00000030614 RLG00000030617
rosa_multiflora	Rmu_sc0005698.1_g000002 Rmu_sc0007593.1_g000003
rosa_roxburghii	Rroxscaffold_4G00327510 Rroxscaffold_4G00330560
rosa_rugosa	Rorug01G0015300 Rorug01G0015400 Rorug01G0015400
rosa_samantha	Rh1AG026400 Rh1BG022700 Rh1CG024600 Rh1CG049800 Rh1DG047300 Rh1DG054300
rosa_wichuraiana	Rw1G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1014
AatII	GACGTC	1 cut(s)	480
Acc36I	ACCTGC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	1333
AcsI	RAATTY	6 cut(s)	232, 617, 805, 869, 1192, 1414
AcuI	CTGAAG	1 cut(s)	1057
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	2 cut(s)	245, 947
AfiI	CCNNNNNNNGG	2 cut(s)	526, 1179
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	7 cut(s)	42, 163, 622, 641, 737, 770, 1225
Alw21I	GWGCWC	3 cut(s)	149, 319, 444
AlwI	GGATC	1 cut(s)	1333
AlwNI	CAGNNNCTG	2 cut(s)	203, 563
AoxI	GGCC	5 cut(s)	165, 257, 423, 514, 890
ApeKI	GCWGC	5 cut(s)	203, 385, 777, 780, 1373
ApoI	RAATTY	6 cut(s)	232, 617, 805, 869, 1192, 1414
AseI	ATTAAT	1 cut(s)	603
Asp700I	GAANNNNTTC	1 cut(s)	645
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	258
AsuHPI	GGTGA	6 cut(s)	11, 101, 1105, 1268, 1282, 1315
BanII	GRGCYC	2 cut(s)	149, 444
BauI	CACGAG	1 cut(s)	1356
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	3 cut(s)	149, 319, 444
BbvCI	CCTCAGC	1 cut(s)	1377
BbvI	GCAGC	5 cut(s)	190, 372, 767, 789, 1360
BccI	CCATC	7 cut(s)	449, 704, 736, 844, 874, 949, 1054
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciVI	GTATCC	1 cut(s)	1204
BfaI	CTAG	1 cut(s)	1441
BfrI	CTTAAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	1204
BisI	GCNGC	5 cut(s)	204, 386, 778, 781, 1374
BlsI	GCNGC	5 cut(s)	205, 387, 779, 782, 1375
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	4 cut(s)	356, 384, 668, 1427
BpiI	GAAGAC	1 cut(s)	119
Bpu10I	CCTNAGC	2 cut(s)	417, 1377
BsaAI	YACGTR	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	261
BsaXI	ACNNNNNCTCC	4 cut(s)	737, 767, 845, 875
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 1179
Bse1I	ACTGG	2 cut(s)	356, 1212
Bse3DI	GCAATG	1 cut(s)	1296
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	4 cut(s)	683, 1204, 1401, 1442
BseLI	CCNNNNNNNGG	2 cut(s)	526, 1179
BseMI	GCAATG	1 cut(s)	1296
BseMII	CTCAG	5 cut(s)	182, 408, 645, 1359, 1368
BseNI	ACTGG	2 cut(s)	356, 1212
BseXI	GCAGC	5 cut(s)	190, 372, 767, 789, 1360
BseYI	CCCAGC	1 cut(s)	1148
BsgI	GTGCAG	2 cut(s)	427, 595
BshFI	GGCC	5 cut(s)	167, 259, 425, 516, 892
BsiHKAI	GWGCWC	3 cut(s)	149, 319, 444
BslI	CCNNNNNNNGG	2 cut(s)	526, 1179
BsnI	GGCC	5 cut(s)	167, 259, 425, 516, 892
Bsp1286I	GDGCHC	3 cut(s)	149, 319, 444
Bsp143I	GATC	2 cut(s)	631, 1338
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	5 cut(s)	167, 259, 425, 516, 892
BspCNI	CTCAG	5 cut(s)	183, 409, 646, 1360, 1369
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	1333
BspTI	CTTAAG	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	1296
BsrI	ACTGG	2 cut(s)	356, 1212
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	2 cut(s)	631, 1338
BssNI	GRCGYC	1 cut(s)	477
BssSI	CACGAG	1 cut(s)	1356
BssT1I	CCWWGG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	1356
Bst4CI	ACNGT	5 cut(s)	472, 541, 688, 1003, 1229
BstACI	GRCGYC	1 cut(s)	477
BstAFI	CTTAAG	1 cut(s)	320
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	4 cut(s)	410, 423, 427, 431
BstDEI	CTNAG	7 cut(s)	191, 381, 417, 654, 900, 1368, 1377
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	4 cut(s)	683, 1204, 1401, 1442
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	2 cut(s)	634, 1341
BstMBI	GATC	2 cut(s)	631, 1338
BstMWI	GCNNNNNNNGC	4 cut(s)	394, 418, 439, 1352
BstNSI	RCATGY	1 cut(s)	98
BstSNI	TACGTA	1 cut(s)	341
BstV1I	GCAGC	5 cut(s)	190, 372, 767, 789, 1360
BstV2I	GAAGAC	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	1204
BsuRI	GGCC	5 cut(s)	167, 259, 425, 516, 892
BtsCI	GGATG	4 cut(s)	683, 1204, 1401, 1442
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	349, 483
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	4 cut(s)	410, 423, 427, 431
CaiI	CAGNNNCTG	2 cut(s)	203, 563
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	258
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	244, 946
CviAII	CATG	5 cut(s)	95, 445, 763, 1336, 1363
CviQI	GTAC	2 cut(s)	244, 946
DdeI	CTNAG	7 cut(s)	191, 381, 417, 654, 900, 1368, 1377
DpnI	GATC	2 cut(s)	633, 1340
DpnII	GATC	2 cut(s)	631, 1338
Ecl136II	GAGCTC	2 cut(s)	147, 442
Eco105I	TACGTA	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	2 cut(s)	149, 444
Eco53kI	GAGCTC	2 cut(s)	147, 442
Eco57I	CTGAAG	1 cut(s)	1057
EcoICRI	GAGCTC	2 cut(s)	147, 442
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	1192
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	2 cut(s)	149, 444
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	5 cut(s)	98, 448, 766, 1339, 1366
FatI	CATG	5 cut(s)	94, 444, 762, 1335, 1362
FauNDI	CATATG	2 cut(s)	928, 1155
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	5 cut(s)	204, 386, 778, 781, 1374
FokI	GGATG	3 cut(s)	690, 1211, 1408
FriOI	GRGCYC	2 cut(s)	149, 444
Fsp4HI	GCNGC	5 cut(s)	204, 386, 778, 781, 1374
FspBI	CTAG	1 cut(s)	1441
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	5 cut(s)	204, 386, 778, 781, 1374
GsaI	CCCAGC	1 cut(s)	1152
HaeIII	GGCC	5 cut(s)	167, 259, 425, 516, 892
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	5 cut(s)	98, 448, 766, 1339, 1366
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	2 cut(s)	475, 756
HindII	GTYRAC	2 cut(s)	475, 756
HinfI	GANTC	2 cut(s)	749, 1169
HphI	GGTGA	6 cut(s)	11, 101, 1105, 1268, 1282, 1315
Hpy166II	GTNNAC	5 cut(s)	92, 475, 481, 756, 836
Hpy188I	TCNGA	5 cut(s)	192, 565, 636, 1076, 1198
Hpy188III	TCNNGA	5 cut(s)	183, 281, 629, 788, 916
Hpy8I	GTNNAC	5 cut(s)	92, 475, 481, 756, 836
HpyAV	CCTTC	3 cut(s)	26, 157, 794
HpyCH4III	ACNGT	5 cut(s)	472, 541, 688, 1003, 1229
HpyCH4IV	ACGT	2 cut(s)	340, 477
HpyCH4V	TGCA	6 cut(s)	296, 408, 570, 612, 681, 1355
HpyF10VI	GCNNNNNNNGC	4 cut(s)	394, 418, 439, 1352
HpyF3I	CTNAG	7 cut(s)	191, 381, 417, 654, 900, 1368, 1377
HpySE526I	ACGT	2 cut(s)	340, 477
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	5 cut(s)	98, 448, 766, 1339, 1366
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	631, 1338
LmnI	GCTCC	4 cut(s)	4, 144, 152, 175
Lsp1109I	GCAGC	5 cut(s)	190, 372, 767, 789, 1360
LweI	GCATC	4 cut(s)	356, 384, 668, 1427
MaeI	CTAG	1 cut(s)	1441
MaeII	ACGT	2 cut(s)	340, 477
MaeIII	GTNAC	1 cut(s)	1006
MalI	GATC	2 cut(s)	633, 1340
MboI	GATC	2 cut(s)	631, 1338
MboII	GAAGA	7 cut(s)	119, 235, 653, 859, 991, 1069, 1213
MhlI	GDGCHC	3 cut(s)	149, 319, 444
MlyI	GAGTC	1 cut(s)	743
MmeI	TCCRAC	2 cut(s)	174, 261
MroXI	GAANNNNTTC	1 cut(s)	645
MseI	TTAA	7 cut(s)	56, 321, 449, 603, 803, 909, 921
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	2 cut(s)	780, 877
MspCI	CTTAAG	1 cut(s)	320
MwoI	GCNNNNNNNGC	4 cut(s)	394, 418, 439, 1352
NdeI	CATATG	2 cut(s)	928, 1155
NdeII	GATC	2 cut(s)	631, 1338
NlaIII	CATG	5 cut(s)	98, 448, 766, 1339, 1366
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	387
NspI	RCATGY	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	1169
PkrI	GCNGC	5 cut(s)	205, 387, 779, 782, 1375
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
Ppu21I	YACGTR	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	603
PsiI	TTATAA	1 cut(s)	1014
Psp124BI	GAGCTC	2 cut(s)	149, 444
PspFI	CCCAGC	1 cut(s)	1148
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	258
PstNI	CAGNNNCTG	2 cut(s)	203, 563
PvuII	CAGCTG	2 cut(s)	780, 877
RsaI	GTAC	2 cut(s)	245, 947
RsaNI	GTAC	2 cut(s)	244, 946
RseI	CAYNNNNRTG	1 cut(s)	354
SacI	GAGCTC	2 cut(s)	149, 444
SaqAI	TTAA	7 cut(s)	56, 321, 449, 603, 803, 909, 921
SatI	GCNGC	5 cut(s)	204, 386, 778, 781, 1374
Sau3AI	GATC	2 cut(s)	631, 1338
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	1 cut(s)	743
SduI	GDGCHC	3 cut(s)	149, 319, 444
SfaNI	GCATC	4 cut(s)	356, 384, 668, 1427
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SnaBI	TACGTA	1 cut(s)	341
SsiI	CCGC	1 cut(s)	87
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	1 cut(s)	1441
SstI	GAGCTC	2 cut(s)	149, 444
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	5 cut(s)	472, 541, 688, 1003, 1229
TaiI	ACGT	2 cut(s)	343, 480
TaqI	TCGA	5 cut(s)	74, 137, 184, 438, 543
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	1169
Tru1I	TTAA	7 cut(s)	56, 321, 449, 603, 803, 909, 921
Tru9I	TTAA	7 cut(s)	56, 321, 449, 603, 803, 909, 921
TscAI	CASTG	2 cut(s)	356, 490
TseI	GCWGC	5 cut(s)	203, 385, 777, 780, 1373
TspDTI	ATGAA	7 cut(s)	119, 566, 882, 992, 1097, 1112, 1307
TspGWI	ACGGA	2 cut(s)	157, 1424
TspRI	CASTG	2 cut(s)	356, 490
Vha464I	CTTAAG	1 cut(s)	320
VspI	ATTAAT	1 cut(s)	603
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	6 cut(s)	232, 617, 805, 869, 1192, 1414
XceI	RCATGY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	645
XspI	CTAG	1 cut(s)	1441
ZraI	GACGTC	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.