Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007593.1

Orthogroup ID

OG0004347

Physical Location & Seq

Genomic Coordinates Forward (+)

16686 .. 18247

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007593.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgttaactgatgggctcaaaccaactgttgacgtctacacagctcttgttagtgtttatggcaaaagtggcctctttgacaaggcattctctactgttgatgatatgaagtcaatttctgactgcaaaccagatgtatatacatattcaattcttataaattgctgcaccaaattcagtcgctatgatctgattgagcaagttctggctgaaatgtcatatctgggaattggatgtaacacagtcatatacaatactcttattgatggatatggtaaagctgagatgtttgaactgatggaggactcattgacagatatgattgaaagtggcagctgccttcctgatgttttcacattcaattcttttcttggcgcttatgggaaaagtgggcagatagacaagatggagaagtggtatgatgaatttcagctaatgggaataaagccagaccttaagacatttaatgtcctgattaaatcatatgggaaagcaagaatgtatgaaaagatgggatctgttatggagtttatggagaaaaggtatttcaccccaactgttgttacttataacatagtaattgaggtatttgggaaagctggaaatattgtgaagatggaggaatacttcagaaaaatgaagcaccaaggaatgaagcctagctctattacttattgttccctcgttagtgcgtacagcaaagctgggaatataaataaagttgattccattttgaggcaagtagagaattcagatgttatacttgatacagcttttttcaactgtattattagtgcttatggtcgggctggtgatataaataagatgggtgaattatttttgaccatggaagagaaaaaatgtgttcctgatcatatcacctttgctaccatgatccaagcctgcaatgcactaggcatgactgcagctgtcgaagatttaaaaaacaggatgattaccaccaatgacagttcaggcacaaggttgattggattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

332

Amino Acids

37.28

Weight (kDa)

5.2

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53170 AT3G53170 AT3G53170 AT3G53170
fragaria_vesca	FvH4_7g01420
malus_domestica	MD02G1305700.v1.1 MD02G1306000.v1.1
prunus_persica	Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1
pyrus_communis	pycom02g25620
rosa_chinensis	RchiOBHm_Chr1g0317271
rosa_laevigata	RLG00000029578 RLG00000030614 RLG00000030617
rosa_multiflora	Rmu_sc0005698.1_g000002 Rmu_sc0007593.1_g000003
rosa_roxburghii	Rroxscaffold_4G00327510 Rroxscaffold_4G00330560
rosa_rugosa	Rorug01G0015300 Rorug01G0015400 Rorug01G0015400
rosa_samantha	Rh1AG026400 Rh1BG022700 Rh1CG024600 Rh1CG049800 Rh1DG047300 Rh1DG054300
rosa_wichuraiana	Rw1G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	158, 570
AatII	GACGTC	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	36
AclWI	GGATC	2 cut(s)	523, 889
AcsI	RAATTY	3 cut(s)	173, 425, 748
AcuI	CTGAAG	1 cut(s)	613
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	1 cut(s)	735
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	5 cut(s)	150, 293, 326, 361, 781
AluBI	AGCT	9 cut(s)	44, 281, 336, 433, 599, 663, 704, 773, 929
AluI	AGCT	9 cut(s)	44, 281, 336, 433, 599, 663, 704, 773, 929
AlwI	GGATC	2 cut(s)	523, 889
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	4 cut(s)	165, 333, 336, 926
ApoI	RAATTY	3 cut(s)	173, 425, 748
AspLEI	GCGC	1 cut(s)	377
AsuHPI	GGTGA	4 cut(s)	541, 824, 842, 871
BanII	GRGCYC	1 cut(s)	18
BbvI	GCAGC	4 cut(s)	152, 323, 345, 938
BccI	CCATC	7 cut(s)	5, 260, 292, 400, 505, 610, 820
BclI	TGATCA	1 cut(s)	871
BfaI	CTAG	3 cut(s)	660, 914, 997
BfmI	CTRYAG	1 cut(s)	924
BfoI	RGCGCY	1 cut(s)	378
BfrI	CTTAAG	1 cut(s)	455
BisI	GCNGC	4 cut(s)	166, 334, 337, 927
BlsI	GCNGC	4 cut(s)	167, 335, 338, 928
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	646, 846
BsaXI	ACNNNNNCTCC	4 cut(s)	401, 431, 527, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse3DI	GCAATG	1 cut(s)	913
BseDI	CCNNGG	2 cut(s)	646, 846
BseGI	GGATG	2 cut(s)	239, 957
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMI	GCAATG	1 cut(s)	913
BseMII	CTCAG	1 cut(s)	273
BseXI	GCAGC	4 cut(s)	152, 323, 345, 938
BseYI	CCCAGC	1 cut(s)	704
BsgI	GTGCAG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	4 cut(s)	187, 515, 871, 894
Bsp19I	CCATGG	1 cut(s)	846
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	274
BspMAI	CTGCAG	1 cut(s)	928
BspPI	GGATC	2 cut(s)	523, 889
BspTI	CTTAAG	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	913
BssECI	CCNNGG	2 cut(s)	646, 846
BssMI	GATC	4 cut(s)	187, 515, 871, 894
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	646, 846
Bst4CI	ACNGT	6 cut(s)	28, 97, 244, 559, 785, 971
Bst6I	CTCTTC	1 cut(s)	846
BstACI	GRCGYC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	904
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	846
BstF5I	GGATG	2 cut(s)	239, 957
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	4 cut(s)	190, 518, 874, 897
BstMBI	GATC	4 cut(s)	187, 515, 871, 894
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 908
BstSFI	CTRYAG	1 cut(s)	924
BstV1I	GCAGC	4 cut(s)	152, 323, 345, 938
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	846
BtsCI	GGATG	2 cut(s)	239, 957
Cac8I	GCNNGC	1 cut(s)	904
CfoI	GCGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	3 cut(s)	847, 892, 919
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	4 cut(s)	189, 517, 873, 896
DpnII	GATC	4 cut(s)	187, 515, 871, 894
DraI	TTTAAA	1 cut(s)	942
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Eco130I	CCWWGG	2 cut(s)	646, 846
Eco24I	GRGCYC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	613
EcoRI	GAATTC	1 cut(s)	748
EcoT14I	CCWWGG	2 cut(s)	646, 846
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	2 cut(s)	646, 846
FaeI	CATG	3 cut(s)	850, 895, 922
FatI	CATG	3 cut(s)	846, 891, 918
FauNDI	CATATG	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	871
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	4 cut(s)	166, 334, 337, 927
FokI	GGATG	2 cut(s)	246, 964
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	4 cut(s)	166, 334, 337, 927
FspBI	CTAG	3 cut(s)	660, 914, 997
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	4 cut(s)	166, 334, 337, 927
GsaI	CCCAGC	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	850, 895, 922
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	2 cut(s)	6, 31
HindII	GTYRAC	2 cut(s)	6, 31
HinfI	GANTC	3 cut(s)	305, 725, 993
HpaI	GTTAAC	1 cut(s)	6
HphI	GGTGA	4 cut(s)	541, 824, 842, 871
Hpy166II	GTNNAC	3 cut(s)	6, 31, 37
Hpy188I	TCNGA	4 cut(s)	121, 192, 632, 754
Hpy188III	TCNNGA	3 cut(s)	344, 472, 869
Hpy8I	GTNNAC	3 cut(s)	6, 31, 37
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	6 cut(s)	28, 97, 244, 559, 785, 971
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	126, 168, 906, 911, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 908
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	850, 895, 922
HspAI	GCGC	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	871
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	187, 515, 871, 894
Lsp1109I	GCAGC	4 cut(s)	152, 323, 345, 938
MaeI	CTAG	3 cut(s)	660, 914, 997
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	236, 562
MalI	GATC	4 cut(s)	189, 517, 873, 896
MboI	GATC	4 cut(s)	187, 515, 871, 894
MboII	GAAGA	3 cut(s)	625, 863, 947
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	6 cut(s)	83, 295, 577, 613, 692, 729
MseI	TTAA	5 cut(s)	5, 456, 465, 477, 941
MspA1I	CMGCKG	2 cut(s)	336, 929
MspCI	CTTAAG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	69, 908
NcoI	CCATGG	1 cut(s)	846
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	4 cut(s)	187, 515, 871, 894
NlaIII	CATG	3 cut(s)	850, 895, 922
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	725, 993
PkrI	GCNGC	4 cut(s)	167, 335, 338, 928
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PsiI	TTATAA	2 cut(s)	158, 570
PspFI	CCCAGC	1 cut(s)	704
PstI	CTGCAG	1 cut(s)	928
PsuI	RGATCY	1 cut(s)	515
PvuII	CAGCTG	2 cut(s)	336, 929
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
SaqAI	TTAA	5 cut(s)	5, 456, 465, 477, 941
SatI	GCNGC	4 cut(s)	166, 334, 337, 927
Sau3AI	GATC	4 cut(s)	187, 515, 871, 894
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	924
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	3 cut(s)	660, 914, 997
StyI	CCWWGG	2 cut(s)	646, 846
TaaI	ACNGT	6 cut(s)	28, 97, 244, 559, 785, 971
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	933
TfiI	GAWTC	2 cut(s)	725, 993
Tru1I	TTAA	5 cut(s)	5, 456, 465, 477, 941
Tru9I	TTAA	5 cut(s)	5, 456, 465, 477, 941
TseI	GCWGC	4 cut(s)	165, 333, 336, 926
TspDTI	ATGAA	5 cut(s)	122, 438, 519, 653, 668
Vha464I	CTTAAG	1 cut(s)	455
XapI	RAATTY	3 cut(s)	173, 425, 748
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	3 cut(s)	660, 914, 997
ZraI	GACGTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.