Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016912

Physical Location & Seq

Genomic Coordinates Forward (+)

5580770 .. 5581615

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGACCAGGGTTTCAATTGTTACATTAGGTGCTGTGATGTTAGGGGTGTTGATAATGGTGGTTCCTTCGTATGGTTGCCTGCCTAGTGCGGTAGCTTATTCGGTCGGGGTAGGAGACCCGGTGTGTTGGTCCATCCCTCCCCGACCGGATTACTACACCAACTGGTCCAATTCCCATTTCTTCAAGATCGGCGACACTCTAGTTTTTAACTTTGAAGGGGGGCTTTCGAATGTGGTGCAAGTCACAAAGCAAGACTACGAGAGCTGCACAGTAGCCACAGCTTACAAGCCCTTTCAAATCTTCAACAATGGTCCTGCAAATTTCACATTGTTGGATAAAGGTGTCTTGTACTTCATTACTAACGTCTCAAACTATTGTAGTCTAGGGCAGAAGATTTCCATTTCTGTTCACGAGTGCGCCTGCCCCGTAAACGAACCACCGAGCGGCCCTTCAGTTTCTCCTCCTCCTGCTGCTGTTCCTCCATCTTCGGTTAGTTGGAATAGATCTCAGCCTCCTGCAGCGCAAGTTATGACTCCGGTGGGAGCCCCGTCCCCTTTAGGGTATAATGGCTCCTCTACTGAGACTTTTCCTTCTGTGAAATCTGCAGCATCAGTGCTACAGAAAGGAATGGTGCTTGGTGTACTTCATGCAATCTTATTTTGGCTCGGTGGCGTTTGGTTATTGGTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

231

Amino Acids

24.43

Weight (kDa)

6.79

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	47 - 130	1.7e-18	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05250
malus_domestica	MD07G1062400.v1.1
prunus_persica	Prupe.2G073300_v2.0.a1
pyrus_communis	pycom07g04790
rosa_chinensis	RchiOBHm_Chr1g0332061
rosa_laevigata	RLG00000029695
rosa_multiflora	Rmu_sc0003358.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318410
rosa_rugosa	Rorug01G0098100
rosa_samantha	Rh1AG122000 Rh1BG093400 Rh1CG116600 Rh1DG127700
rosa_wichuraiana	Rw1G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	444
AciI	CCGC	2 cut(s)	89, 444
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	2 cut(s)	350, 642
AfiI	CCNNNNNNNGG	3 cut(s)	71, 443, 558
AgsI	TTSAA	5 cut(s)	15, 184, 215, 296, 304
AjnI	CCWGG	1 cut(s)	5
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	3 cut(s)	95, 264, 281
AluI	AGCT	3 cut(s)	95, 264, 281
Alw26I	GTCTC	3 cut(s)	108, 370, 575
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	4 cut(s)	264, 470, 518, 605
ApoI	RAATTY	1 cut(s)	319
AspLEI	GCGC	2 cut(s)	419, 523
AspS9I	GGNCC	4 cut(s)	129, 165, 311, 446
AsuC2I	CCSGG	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	227
AvaII	GGWCC	3 cut(s)	129, 165, 311
BanII	GRGCYC	1 cut(s)	547
BauI	CACGAG	1 cut(s)	410
BbvI	GCAGC	4 cut(s)	251, 457, 530, 617
BccI	CCATC	2 cut(s)	140, 490
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	108, 370, 575
BfaI	CTAG	3 cut(s)	84, 200, 383
BfmI	CTRYAG	3 cut(s)	516, 603, 617
BglII	AGATCT	1 cut(s)	503
BisI	GCNGC	5 cut(s)	265, 445, 471, 519, 606
BlsI	GCNGC	5 cut(s)	266, 446, 472, 520, 607
Bme1390I	CCNGG	2 cut(s)	7, 119
Bme18I	GGWCC	3 cut(s)	129, 165, 311
BmgT120I	GGNCC	4 cut(s)	129, 165, 311, 446
BmiI	GGNNCC	3 cut(s)	63, 544, 571
BmrFI	CCNGG	2 cut(s)	7, 119
BmsI	GCATC	1 cut(s)	617
Bpu14I	TTCGAA	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	2 cut(s)	145, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 443, 558
Bse1I	ACTGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	3 cut(s)	71, 443, 558
BseMII	CTCAG	2 cut(s)	521, 570
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	3 cut(s)	450, 453, 562
BseXI	GCAGC	4 cut(s)	251, 457, 530, 617
BsgI	GTGCAG	1 cut(s)	250
Bsh1285I	CGRYCG	2 cut(s)	105, 146
BshFI	GGCC	1 cut(s)	447
BsiEI	CGRYCG	2 cut(s)	105, 146
BsiSI	CCGG	3 cut(s)	119, 146, 536
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	3 cut(s)	71, 443, 558
BsmAI	GTCTC	3 cut(s)	108, 370, 575
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	447
Bso31I	GGTCTC	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	2 cut(s)	186, 503
BspACI	CCGC	2 cut(s)	89, 444
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	520, 571
BspLI	GGNNCC	3 cut(s)	63, 544, 571
BspMAI	CTGCAG	2 cut(s)	520, 607
BspT104I	TTCGAA	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	186, 503
BssSI	CACGAG	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	80, 421
BstDEI	CTNAG	2 cut(s)	507, 579
BstF5I	GGATG	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	419, 523
BstKTI	GATC	2 cut(s)	189, 506
BstMAI	GTCTC	3 cut(s)	108, 370, 575
BstMBI	GATC	2 cut(s)	186, 503
BstMCI	CGRYCG	2 cut(s)	105, 146
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	5, 117
BstSFI	CTRYAG	3 cut(s)	516, 603, 617
BstV1I	GCAGC	4 cut(s)	251, 457, 530, 617
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	2 cut(s)	80, 421
CfoI	GCGC	2 cut(s)	419, 523
Cfr13I	GGNCC	4 cut(s)	129, 165, 311, 446
Csp6I	GTAC	2 cut(s)	349, 641
CviAII	CATG	1 cut(s)	647
CviQI	GTAC	2 cut(s)	349, 641
DdeI	CTNAG	2 cut(s)	507, 579
DpnI	GATC	2 cut(s)	188, 505
DpnII	GATC	2 cut(s)	186, 503
Eco24I	GRGCYC	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	108
Eco47I	GGWCC	3 cut(s)	129, 165, 311
Eco57I	CTGAAG	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	547
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	1 cut(s)	650
FaiI	YATR	4 cut(s)	72, 530, 564, 648
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	1 cut(s)	646
Fnu4HI	GCNGC	5 cut(s)	265, 445, 471, 519, 606
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	5 cut(s)	265, 445, 471, 519, 606
FspBI	CTAG	3 cut(s)	84, 200, 383
GlaI	GCGC	2 cut(s)	418, 522
GluI	GCNGC	5 cut(s)	265, 445, 471, 519, 606
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	3 cut(s)	119, 146, 536
HhaI	GCGC	2 cut(s)	419, 523
Hin1II	CATG	1 cut(s)	650
Hin6I	GCGC	2 cut(s)	417, 521
HinP1I	GCGC	2 cut(s)	417, 521
HinfI	GANTC	1 cut(s)	532
HpaII	CCGG	3 cut(s)	119, 146, 536
Hpy166II	GTNNAC	3 cut(s)	409, 430, 641
Hpy188III	TCNNGA	2 cut(s)	184, 410
Hpy8I	GTNNAC	3 cut(s)	409, 430, 641
HpyAV	CCTTC	4 cut(s)	75, 209, 459, 600
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	6 cut(s)	238, 267, 317, 518, 605, 650
HpyF3I	CTNAG	2 cut(s)	507, 579
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	650
HspAI	GCGC	2 cut(s)	417, 521
Kzo9I	GATC	2 cut(s)	186, 503
LmnI	GCTCC	2 cut(s)	542, 575
Lsp1109I	GCAGC	4 cut(s)	251, 457, 530, 617
LweI	GCATC	1 cut(s)	617
MaeI	CTAG	3 cut(s)	84, 200, 383
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	19, 241
MalI	GATC	2 cut(s)	188, 505
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	2 cut(s)	186, 503
MboII	GAAGA	4 cut(s)	172, 292, 403, 477
MfeI	CAATTG	1 cut(s)	15
MflI	RGATCY	1 cut(s)	503
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	3 cut(s)	15, 169, 319
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	2 cut(s)	312, 476
MnlI	CCTC	6 cut(s)	147, 471, 474, 489, 522, 583
MseI	TTAA	2 cut(s)	207, 691
MspI	CCGG	3 cut(s)	119, 146, 536
MspR9I	CCNGG	2 cut(s)	7, 119
MunI	CAATTG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	7
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	186, 503
NlaIII	CATG	1 cut(s)	650
NlaIV	GGNNCC	3 cut(s)	63, 544, 571
NmuCI	GTSAC	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	227
PkrI	GCNGC	5 cut(s)	266, 446, 472, 520, 607
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	63, 544, 571
PspPI	GGNCC	4 cut(s)	129, 165, 311, 446
PstI	CTGCAG	2 cut(s)	520, 607
PsuI	RGATCY	1 cut(s)	503
RsaI	GTAC	2 cut(s)	350, 642
RsaNI	GTAC	2 cut(s)	349, 641
SaqAI	TTAA	2 cut(s)	207, 691
SatI	GCNGC	5 cut(s)	265, 445, 471, 519, 606
Sau3AI	GATC	2 cut(s)	186, 503
Sau96I	GGNCC	4 cut(s)	129, 165, 311, 446
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	2 cut(s)	7, 119
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	6 cut(s)	31, 97, 266, 283, 343, 366
SfaNI	GCATC	1 cut(s)	617
SfcI	CTRYAG	3 cut(s)	516, 603, 617
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	3 cut(s)	129, 165, 311
Sse9I	AATT	3 cut(s)	15, 169, 319
SsiI	CCGC	2 cut(s)	89, 444
SspMI	CTAG	3 cut(s)	84, 200, 383
StyD4I	CCNGG	2 cut(s)	5, 117
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	227
TaqII	GACCGA	1 cut(s)	91
TasI	AATT	3 cut(s)	15, 169, 319
TatI	WGTACW	2 cut(s)	348, 640
TauI	GCSGC	1 cut(s)	447
Tru1I	TTAA	2 cut(s)	207, 691
Tru9I	TTAA	2 cut(s)	207, 691
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	4 cut(s)	264, 470, 518, 605
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	343, 635
TspRI	CASTG	1 cut(s)	618
VpaK11BI	GGWCC	3 cut(s)	129, 165, 311
XapI	RAATTY	1 cut(s)	319
XspI	CTAG	3 cut(s)	84, 200, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.