Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0016912

Physical Location & Seq

Genomic Coordinates Reverse (-)

22095415 .. 22096235

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGACCAGAGTTTCAATGGTTACATTAGTTGTTGTGATGTTAGGGGTGGTGATAATGGCGGTTCTTTCGTATGGTTGCGCTCCTAGTGGTGTAGCTTACTCAGTGGGAGTGGGAGACCCAGTGTGTTGGTCCATCCCTCCCCGACCGGATTACTACGCCAACTGGTCCAATTCTCATTTCTTCAAAATCGGCGACACTCTCGTTTTTAACTTTCAAGGGGGGCTTTCGAATGTGGTGCAAGTGACAAAGCAAGACTACGAGAGCTGCACCGCTTACAAACCCTTTAAAATCTTCAACAACGGTCCAGCAAATTTCACATTGTTGGAAAAAGGTGTCTTATATTTCATTACTGACGTCTCAAACTACTGTAGTCTAGGGCAGAAGATTTCCATTTCTGTTCACGAGTGCGCCTGCCCCGTTAATCAACCACCAAGTGCTCCAACAGCGCCCCCTTCAGTTTCTCCACTTCCTGCTGCAGTTCCTCCATCTTCGGTTAGTCCGAATAGGTCTCAGCCTCCTCCAGCACAAGTTATAACTCCAGCAGGAGCTCCATCCCCATTAGGGTATAATGGTTCCTCCCCTAAGACTTATCCTCCTGTGAAATCTGCAGCATCAATGCTACATAAAGGAATGATGCTCGGTGTTCTTCATGGAATCTTTGGCTCGGTGGCGTTTGTTCTTTGGTCATCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

231

Amino Acids

24.41

Weight (kDa)

8.72

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	47 - 127	3.4e-20	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05250
malus_domestica	MD07G1062400.v1.1
prunus_persica	Prupe.2G073300_v2.0.a1
pyrus_communis	pycom07g04790
rosa_chinensis	RchiOBHm_Chr1g0332061
rosa_laevigata	RLG00000029695
rosa_multiflora	Rmu_sc0003358.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318410
rosa_rugosa	Rorug01G0098100
rosa_samantha	Rh1AG122000 Rh1BG093400 Rh1CG116600 Rh1DG127700
rosa_wichuraiana	Rw1G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AatII	GACGTC	1 cut(s)	357
AciI	CCGC	2 cut(s)	59, 270
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	354
AdeI	CACNNNGTG	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	4 cut(s)	15, 184, 215, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	3 cut(s)	95, 264, 548
AluI	AGCT	3 cut(s)	95, 264, 548
Alw21I	GWGCWC	2 cut(s)	439, 550
Alw26I	GTCTC	3 cut(s)	108, 361, 513
ApeKI	GCWGC	3 cut(s)	264, 473, 608
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	3 cut(s)	80, 410, 448
AspS9I	GGNCC	3 cut(s)	129, 165, 302
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	227
AvaII	GGWCC	3 cut(s)	129, 165, 302
BanII	GRGCYC	1 cut(s)	550
BauI	CACGAG	1 cut(s)	401
Bbv12I	GWGCWC	2 cut(s)	439, 550
BbvI	GCAGC	3 cut(s)	251, 460, 620
BccI	CCATC	3 cut(s)	140, 493, 559
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BcoDI	GTCTC	3 cut(s)	108, 361, 513
BfaI	CTAG	2 cut(s)	84, 374
BfmI	CTRYAG	3 cut(s)	367, 474, 606
BfoI	RGCGCY	1 cut(s)	449
BisI	GCNGC	3 cut(s)	265, 474, 609
BlsI	GCNGC	3 cut(s)	266, 475, 610
Bme18I	GGWCC	3 cut(s)	129, 165, 302
BmgT120I	GGNCC	3 cut(s)	129, 165, 302
BmiI	GGNNCC	1 cut(s)	574
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	620, 624
BmuI	ACTGGG	1 cut(s)	113
BpmI	CTGGAG	2 cut(s)	504, 522
Bpu14I	TTCGAA	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	354
BsaI	GGTCTC	2 cut(s)	108, 513
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 577, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse1I	ACTGG	2 cut(s)	119, 167
BseGI	GGATG	3 cut(s)	132, 551, 686
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	114, 524
BseNI	ACTGG	2 cut(s)	119, 167
BseRI	GAGGAG	1 cut(s)	507
BseXI	GCAGC	3 cut(s)	251, 460, 620
BsgI	GTGCAG	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	146
BsiHKAI	GWGCWC	2 cut(s)	439, 550
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	3 cut(s)	108, 361, 513
BsmBI	CGTCTC	1 cut(s)	361
Bso31I	GGTCTC	2 cut(s)	108, 513
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	439, 550
BspACI	CCGC	2 cut(s)	59, 270
BspCNI	CTCAG	2 cut(s)	113, 523
BspLI	GGNNCC	1 cut(s)	574
BspMAI	CTGCAG	2 cut(s)	478, 610
BspT104I	TTCGAA	1 cut(s)	227
BspTNI	GGTCTC	2 cut(s)	108, 513
BsrI	ACTGG	2 cut(s)	119, 167
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	401
Bst2BI	CACGAG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	302, 368
BstACI	GRCGYC	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	3 cut(s)	100, 510, 582
BstF5I	GGATG	3 cut(s)	132, 551, 686
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	3 cut(s)	80, 410, 448
BstMAI	GTCTC	3 cut(s)	108, 361, 513
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstSFI	CTRYAG	3 cut(s)	367, 474, 606
BstV1I	GCAGC	3 cut(s)	251, 460, 620
BstXI	CCANNNNNNTGG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	132, 551, 686
BtsIMutI	CAGTG	2 cut(s)	108, 126
Cac8I	GCNNGC	1 cut(s)	412
CfoI	GCGC	3 cut(s)	80, 410, 448
Cfr13I	GGNCC	3 cut(s)	129, 165, 302
CviAII	CATG	1 cut(s)	650
CviJI	RGCY	6 cut(s)	95, 223, 264, 514, 548, 663
CviKI_1	RGCY	6 cut(s)	95, 223, 264, 514, 548, 663
DdeI	CTNAG	3 cut(s)	100, 510, 582
DraI	TTTAAA	1 cut(s)	286
DraIII	CACNNNGTG	1 cut(s)	434
Ecl136II	GAGCTC	1 cut(s)	548
Eco24I	GRGCYC	1 cut(s)	550
Eco31I	GGTCTC	2 cut(s)	108, 513
Eco47I	GGWCC	3 cut(s)	129, 165, 302
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	548
EcoT38I	GRGCYC	1 cut(s)	550
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	1 cut(s)	653
FaiI	YATR	6 cut(s)	72, 340, 533, 567, 624, 651
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	1 cut(s)	649
Fnu4HI	GCNGC	3 cut(s)	265, 474, 609
FokI	GGATG	3 cut(s)	119, 538, 673
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	3 cut(s)	265, 474, 609
FspBI	CTAG	2 cut(s)	84, 374
GlaI	GCGC	3 cut(s)	79, 409, 447
GluI	GCNGC	3 cut(s)	265, 474, 609
GsuI	CTGGAG	2 cut(s)	504, 522
HaeII	RGCGCY	1 cut(s)	449
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	3 cut(s)	80, 410, 448
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	1 cut(s)	653
Hin6I	GCGC	3 cut(s)	78, 408, 446
HinP1I	GCGC	3 cut(s)	78, 408, 446
HinfI	GANTC	1 cut(s)	654
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	462
HpyCH4III	ACNGT	2 cut(s)	302, 368
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	4 cut(s)	238, 267, 476, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	3 cut(s)	100, 510, 582
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	653
HspAI	GCGC	3 cut(s)	78, 408, 446
LmnI	GCTCC	4 cut(s)	85, 442, 545, 553
Lsp1109I	GCAGC	3 cut(s)	251, 460, 620
LweI	GCATC	2 cut(s)	620, 624
MaeI	CTAG	2 cut(s)	84, 374
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	19, 241
MboII	GAAGA	5 cut(s)	172, 283, 394, 480, 638
MhlI	GDGCHC	2 cut(s)	439, 550
MluCI	AATT	3 cut(s)	169, 310, 691
MmeI	TCCRAC	2 cut(s)	303, 464
MnlI	CCTC	6 cut(s)	147, 492, 525, 528, 586, 603
MseI	TTAA	4 cut(s)	207, 285, 420, 694
MspI	CCGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	443
NlaIII	CATG	1 cut(s)	653
NlaIV	GGNNCC	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	654
PkrI	GCNGC	3 cut(s)	266, 475, 610
PsiI	TTATAA	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	3 cut(s)	129, 165, 302
PstI	CTGCAG	2 cut(s)	478, 610
SacI	GAGCTC	1 cut(s)	550
SaqAI	TTAA	4 cut(s)	207, 285, 420, 694
SatI	GCNGC	3 cut(s)	265, 474, 609
Sau96I	GGNCC	3 cut(s)	129, 165, 302
SduI	GDGCHC	2 cut(s)	439, 550
SetI	ASST	6 cut(s)	97, 266, 334, 357, 509, 550
SfaNI	GCATC	2 cut(s)	620, 624
SfcI	CTRYAG	3 cut(s)	367, 474, 606
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	3 cut(s)	129, 165, 302
Sse9I	AATT	3 cut(s)	169, 310, 691
SsiI	CCGC	2 cut(s)	59, 270
SspMI	CTAG	2 cut(s)	84, 374
SstI	GAGCTC	1 cut(s)	550
TaaI	ACNGT	2 cut(s)	302, 368
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	227
TasI	AATT	3 cut(s)	169, 310, 691
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	4 cut(s)	207, 285, 420, 694
Tru9I	TTAA	4 cut(s)	207, 285, 420, 694
TscAI	CASTG	2 cut(s)	108, 126
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	3 cut(s)	264, 473, 608
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	334, 638
TspRI	CASTG	2 cut(s)	108, 126
VpaK11BI	GGWCC	3 cut(s)	129, 165, 302
XapI	RAATTY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	2 cut(s)	84, 374
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.