Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016912

Physical Location & Seq

Genomic Coordinates Forward (+)

44535134 .. 44535897

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCGGTTCTTTCGTATGGTTGCGCTCCTAGTGGTGTAGCTTACTCAGTGGGAGTGGGAGACCCAGTGTGTTGGTCCATCCCTCCCCGACCGGATTACTACGCGAACTGGTCCAATTCTCATTTCTTCAAAATCGGCGACACTCTCATTTCTCCACTTCCTGCTGCAGTTCCTCCATCTTCAGTTAGCCCGAATAGGTCTCAGCCCCCTGCAGCACAAGTTATAACTCCAGCAGGAGCTCCATCCCCATTAGGGTATAATGGTTCCTCCCCTAAGACTAATCCTCCTGTAAAATCTGCAGCATCAATGCTACATAAAGGAATGATGCTTGGTGTTCTTCATGGAATCTTTGGCTCGGTGGCATTTGTTTTTTGGGCATCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

128

Amino Acids

13.23

Weight (kDa)

9.06

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05250
malus_domestica	MD07G1062400.v1.1
prunus_persica	Prupe.2G073300_v2.0.a1
pyrus_communis	pycom07g04790
rosa_chinensis	RchiOBHm_Chr1g0332061
rosa_laevigata	RLG00000029695
rosa_multiflora	Rmu_sc0003358.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318410
rosa_rugosa	Rorug01G0098100
rosa_samantha	Rh1AG122000 Rh1BG093400 Rh1CG116600 Rh1DG127700
rosa_wichuraiana	Rw1G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AccII	CGCG	1 cut(s)	104
AciI	CCGC	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	2 cut(s)	41, 239
AluI	AGCT	2 cut(s)	41, 239
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	54, 204
ApeKI	GCWGC	3 cut(s)	164, 212, 299
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	75, 111
AvaII	GGWCC	2 cut(s)	75, 111
BanII	GRGCYC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	151, 224, 311
BccI	CCATC	3 cut(s)	86, 184, 250
BcoDI	GTCTC	2 cut(s)	54, 204
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	3 cut(s)	165, 210, 297
BisI	GCNGC	3 cut(s)	165, 213, 300
BlsI	GCNGC	3 cut(s)	166, 214, 301
Bme18I	GGWCC	2 cut(s)	75, 111
BmgT120I	GGNCC	2 cut(s)	75, 111
BmiI	GGNNCC	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	311, 315
BmuI	ACTGGG	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	213
BsaI	GGTCTC	2 cut(s)	54, 204
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	65, 113
BseGI	GGATG	3 cut(s)	78, 242, 377
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	60, 215
BseNI	ACTGG	2 cut(s)	65, 113
BseXI	GCAGC	3 cut(s)	151, 224, 311
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	54, 204
Bso31I	GGTCTC	2 cut(s)	54, 204
Bsp1286I	GDGCHC	1 cut(s)	241
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	59, 214
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	3 cut(s)	169, 214, 301
BspTNI	GGTCTC	2 cut(s)	54, 204
BsrI	ACTGG	2 cut(s)	65, 113
BstDEI	CTNAG	3 cut(s)	46, 201, 273
BstF5I	GGATG	3 cut(s)	78, 242, 377
BstFNI	CGCG	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	26
BstMAI	GTCTC	2 cut(s)	54, 204
BstMCI	CGRYCG	1 cut(s)	92
BstSFI	CTRYAG	3 cut(s)	165, 210, 297
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	3 cut(s)	151, 224, 311
BstXI	CCANNNNNNTGG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	78, 242, 377
BtsIMutI	CAGTG	2 cut(s)	54, 72
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	75, 111
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	5 cut(s)	41, 189, 205, 239, 354
CviKI_1	RGCY	5 cut(s)	41, 189, 205, 239, 354
DdeI	CTNAG	3 cut(s)	46, 201, 273
Ecl136II	GAGCTC	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	241
Eco31I	GGTCTC	2 cut(s)	54, 204
Eco47I	GGWCC	2 cut(s)	75, 111
Eco53kI	GAGCTC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	1 cut(s)	344
FaiI	YATR	5 cut(s)	18, 224, 258, 315, 342
FatI	CATG	1 cut(s)	340
Fnu4HI	GCNGC	3 cut(s)	165, 213, 300
FokI	GGATG	3 cut(s)	65, 229, 364
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	3 cut(s)	165, 213, 300
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	165, 213, 300
GsuI	CTGGAG	1 cut(s)	213
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	167, 212, 299
HpyF3I	CTNAG	3 cut(s)	46, 201, 273
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	1 cut(s)	24
LmnI	GCTCC	3 cut(s)	31, 236, 244
LpnPI	CCDG	8 cut(s)	78, 94, 105, 174, 219, 222, 243, 300
Lsp1109I	GCAGC	3 cut(s)	151, 224, 311
LweI	GCATC	2 cut(s)	311, 315
MaeI	CTAG	1 cut(s)	30
MboII	GAAGA	3 cut(s)	118, 171, 329
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	2 cut(s)	115, 382
MnlI	CCTC	4 cut(s)	93, 183, 277, 294
MseI	TTAA	1 cut(s)	385
MspI	CCGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	104
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	166, 214, 301
PsiI	TTATAA	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	75, 111
PstI	CTGCAG	3 cut(s)	169, 214, 301
SacI	GAGCTC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	3 cut(s)	165, 213, 300
Sau96I	GGNCC	2 cut(s)	75, 111
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	3 cut(s)	43, 200, 241
SfaNI	GCATC	2 cut(s)	311, 315
SfcI	CTRYAG	3 cut(s)	165, 210, 297
SinI	GGWCC	2 cut(s)	75, 111
Sse9I	AATT	2 cut(s)	115, 382
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	241
TasI	AATT	2 cut(s)	115, 382
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TscAI	CASTG	2 cut(s)	54, 72
TseI	GCWGC	3 cut(s)	164, 212, 299
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	2 cut(s)	54, 72
VpaK11BI	GGWCC	2 cut(s)	75, 111
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.