Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0016912

Physical Location & Seq

Genomic Coordinates Reverse (-)

22798674 .. 22799491

Gene Structure 818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG122000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGACCAGAGTTTCAATGGTTACATTAGTTGTTGTGATGTTAGGGGTGGTGATAATGGCGGTTCTTTCGTATGGTTGCGCTCCTAGTGGTGTAGCTTACTCAGTGGGAGTGGGAGACCCAGTGTGTTGGTCCATCCCTCCCCGACCAGATTACTACGCCAACTGGTCCAATTCTCATTTCTTCAAAATCGGCGACACTCTCGTTTTTAACTTTCAAGGGGGGCTTTCGAATGTGGTGCAAGTGACAAAGCAAGACTACGAGAGCTGCACCGCTTACAAACCCTTTAAAATCTTCAACAACGGTCCAGCAAATTTCACATTGTTGGAAAAAGGTGTCTTATATTTCATTACTGACGTCTCAAACTACTGTAGTCTAGGGCAGAAGATTTCCATTTCTGTTCACGAGTGCGCCTGCCCCGTTAATCAACCACCAAGTGCTCCAACAGCGCCCCCTTCAGTTTCTCCACTTCCTGCTGCAGTTCCTCCATCTTCGGTTAGTCCGAATAGGTCTCAGCCTCCTGCAGCACAAGTTATAACTCCAGCAGGAGCTCCATCCCCATTAGGGTATAATGGTTCCTCCCCTAAGAGTCCTCCTGTGAAATCTGCAGCATCAATGCTACATAAAGGAATGATGCTCGGTGTTCTTCATGGAATCTTTGGCTCGGTGGCGTTTGTTCTTTGGTCATCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

230

Amino Acids

24.21

Weight (kDa)

8.73

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	47 - 127	3.4e-20	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05250
malus_domestica	MD07G1062400.v1.1
prunus_persica	Prupe.2G073300_v2.0.a1
pyrus_communis	pycom07g04790
rosa_chinensis	RchiOBHm_Chr1g0332061
rosa_laevigata	RLG00000029695
rosa_multiflora	Rmu_sc0003358.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318410
rosa_rugosa	Rorug01G0098100
rosa_samantha	Rh1AG122000 Rh1BG093400 Rh1CG116600 Rh1DG127700
rosa_wichuraiana	Rw1G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AatII	GACGTC	1 cut(s)	357
AciI	CCGC	2 cut(s)	59, 270
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	354
AdeI	CACNNNGTG	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	4 cut(s)	15, 184, 215, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	3 cut(s)	95, 264, 548
AluI	AGCT	3 cut(s)	95, 264, 548
Alw21I	GWGCWC	2 cut(s)	439, 550
Alw26I	GTCTC	3 cut(s)	108, 361, 513
ApeKI	GCWGC	4 cut(s)	264, 473, 521, 605
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	3 cut(s)	80, 410, 448
AspS9I	GGNCC	3 cut(s)	129, 165, 302
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	227
AvaII	GGWCC	3 cut(s)	129, 165, 302
BanII	GRGCYC	1 cut(s)	550
BauI	CACGAG	1 cut(s)	401
Bbv12I	GWGCWC	2 cut(s)	439, 550
BbvI	GCAGC	4 cut(s)	251, 460, 533, 617
BccI	CCATC	3 cut(s)	140, 493, 559
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BcoDI	GTCTC	3 cut(s)	108, 361, 513
BfaI	CTAG	2 cut(s)	84, 374
BfmI	CTRYAG	4 cut(s)	367, 474, 519, 603
BfoI	RGCGCY	1 cut(s)	449
BisI	GCNGC	4 cut(s)	265, 474, 522, 606
BlsI	GCNGC	4 cut(s)	266, 475, 523, 607
Bme18I	GGWCC	3 cut(s)	129, 165, 302
BmgT120I	GGNCC	3 cut(s)	129, 165, 302
BmiI	GGNNCC	1 cut(s)	574
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	617, 621
BmuI	ACTGGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	354
BsaI	GGTCTC	2 cut(s)	108, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse1I	ACTGG	2 cut(s)	119, 167
BseGI	GGATG	3 cut(s)	132, 551, 683
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	114, 524
BseNI	ACTGG	2 cut(s)	119, 167
BseXI	GCAGC	4 cut(s)	251, 460, 533, 617
BsgI	GTGCAG	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	439, 550
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	3 cut(s)	108, 361, 513
BsmBI	CGTCTC	1 cut(s)	361
Bso31I	GGTCTC	2 cut(s)	108, 513
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	439, 550
BspACI	CCGC	2 cut(s)	59, 270
BspCNI	CTCAG	2 cut(s)	113, 523
BspLI	GGNNCC	1 cut(s)	574
BspMAI	CTGCAG	3 cut(s)	478, 523, 607
BspT104I	TTCGAA	1 cut(s)	227
BspTNI	GGTCTC	2 cut(s)	108, 513
BsrI	ACTGG	2 cut(s)	119, 167
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	401
Bst2BI	CACGAG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	302, 368
BstACI	GRCGYC	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	3 cut(s)	100, 510, 582
BstF5I	GGATG	3 cut(s)	132, 551, 683
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	3 cut(s)	80, 410, 448
BstMAI	GTCTC	3 cut(s)	108, 361, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstSFI	CTRYAG	4 cut(s)	367, 474, 519, 603
BstV1I	GCAGC	4 cut(s)	251, 460, 533, 617
BstXI	CCANNNNNNTGG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	132, 551, 683
BtsIMutI	CAGTG	2 cut(s)	108, 126
Cac8I	GCNNGC	1 cut(s)	412
CfoI	GCGC	3 cut(s)	80, 410, 448
Cfr13I	GGNCC	3 cut(s)	129, 165, 302
CviAII	CATG	1 cut(s)	647
CviJI	RGCY	6 cut(s)	95, 223, 264, 514, 548, 660
CviKI_1	RGCY	6 cut(s)	95, 223, 264, 514, 548, 660
DdeI	CTNAG	3 cut(s)	100, 510, 582
DraI	TTTAAA	1 cut(s)	286
DraIII	CACNNNGTG	1 cut(s)	434
Ecl136II	GAGCTC	1 cut(s)	548
Eco24I	GRGCYC	1 cut(s)	550
Eco31I	GGTCTC	2 cut(s)	108, 513
Eco47I	GGWCC	3 cut(s)	129, 165, 302
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	548
EcoT38I	GRGCYC	1 cut(s)	550
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	1 cut(s)	650
FaiI	YATR	6 cut(s)	72, 340, 533, 567, 621, 648
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	1 cut(s)	646
Fnu4HI	GCNGC	4 cut(s)	265, 474, 522, 606
FokI	GGATG	3 cut(s)	119, 538, 670
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	4 cut(s)	265, 474, 522, 606
FspBI	CTAG	2 cut(s)	84, 374
GlaI	GCGC	3 cut(s)	79, 409, 447
GluI	GCNGC	4 cut(s)	265, 474, 522, 606
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	449
HhaI	GCGC	3 cut(s)	80, 410, 448
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	1 cut(s)	650
Hin6I	GCGC	3 cut(s)	78, 408, 446
HinP1I	GCGC	3 cut(s)	78, 408, 446
HinfI	GANTC	2 cut(s)	586, 651
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	462
HpyCH4III	ACNGT	2 cut(s)	302, 368
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	5 cut(s)	238, 267, 476, 521, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	3 cut(s)	100, 510, 582
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	650
HspAI	GCGC	3 cut(s)	78, 408, 446
LmnI	GCTCC	4 cut(s)	85, 442, 545, 553
Lsp1109I	GCAGC	4 cut(s)	251, 460, 533, 617
LweI	GCATC	2 cut(s)	617, 621
MaeI	CTAG	2 cut(s)	84, 374
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	19, 241
MboII	GAAGA	5 cut(s)	172, 283, 394, 480, 635
MhlI	GDGCHC	2 cut(s)	439, 550
MluCI	AATT	3 cut(s)	169, 310, 688
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	2 cut(s)	303, 464
MnlI	CCTC	5 cut(s)	147, 492, 525, 586, 600
MseI	TTAA	4 cut(s)	207, 285, 420, 691
MwoI	GCNNNNNNNGC	1 cut(s)	443
NlaIII	CATG	1 cut(s)	650
NlaIV	GGNNCC	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	651
PkrI	GCNGC	4 cut(s)	266, 475, 523, 607
PleI	GAGTC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	3 cut(s)	129, 165, 302
PstI	CTGCAG	3 cut(s)	478, 523, 607
SacI	GAGCTC	1 cut(s)	550
SaqAI	TTAA	4 cut(s)	207, 285, 420, 691
SatI	GCNGC	4 cut(s)	265, 474, 522, 606
Sau96I	GGNCC	3 cut(s)	129, 165, 302
SchI	GAGTC	1 cut(s)	595
SduI	GDGCHC	2 cut(s)	439, 550
SetI	ASST	6 cut(s)	97, 266, 334, 357, 509, 550
SfaNI	GCATC	2 cut(s)	617, 621
SfcI	CTRYAG	4 cut(s)	367, 474, 519, 603
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	3 cut(s)	129, 165, 302
Sse9I	AATT	3 cut(s)	169, 310, 688
SsiI	CCGC	2 cut(s)	59, 270
SspMI	CTAG	2 cut(s)	84, 374
SstI	GAGCTC	1 cut(s)	550
TaaI	ACNGT	2 cut(s)	302, 368
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	227
TasI	AATT	3 cut(s)	169, 310, 688
TfiI	GAWTC	1 cut(s)	651
Tru1I	TTAA	4 cut(s)	207, 285, 420, 691
Tru9I	TTAA	4 cut(s)	207, 285, 420, 691
TscAI	CASTG	2 cut(s)	108, 126
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	4 cut(s)	264, 473, 521, 605
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	334, 635
TspRI	CASTG	2 cut(s)	108, 126
VpaK11BI	GGWCC	3 cut(s)	129, 165, 302
XapI	RAATTY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	2 cut(s)	84, 374
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.