Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0016912

Physical Location & Seq

Genomic Coordinates Reverse (-)

26643772 .. 26644592

Gene Structure 821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG127700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGACCAGAGTTTCAATGGTTACATTAGTTGTTGTGATGTTAGGGGTGGTGATAATGGCGGTTCTTTCGTATGGTTGCGCTCCTAGTGGTGTAGCTTACTCAGTGGGAGTGGGAGACCCAGTGTGTTGGTCCATCCCTCCCCGACCGGATTACTACGCCAACTGGTCCAATTCTCATTTCTTCAAAATCGGCGACACTCTCGGGGGGCTTTCGAATGTGGTGCAAGTGACAAAGCAAGACTACGAGAGCTGCACCGCTTACAAACCCTTTAAAATCTTCAACAACGGTCCAGCAAATTTCACATTGTTGGAAAAAGGTGTCTTATATTTCATTACTGACGTCTCAAACTACTGTAGTCTAGGGCAGAAGATTTCCATTTCTGTTCACGAGTGCGCCTGCCCCGTTAATCAACCACCAAGTGCTCCAACAGCGCCCCCTTCAGTTTCTCCACTTCCTGCTGCAGTTCCTCCATCTTCGGTTAGTCCGAATAGGTCTCAGCCTCCTGCAGCACAAGTTATAACTCCAGCAGGAGCTCCATCCCCATTAGGGTATAATGGTTCCTCCCCTAAGACTTATCCTCCTGTGAAATCTGCAGCATCAATGCTACATAAAGGAATGATGCTTGGTGTTCTTCATGGAATCTTTGGCTCGGTGGCGTTTGTTCTTTGGTCATCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

226

Amino Acids

23.75

Weight (kDa)

8.72

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	47 - 122	8.5e-14	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05250
malus_domestica	MD07G1062400.v1.1
prunus_persica	Prupe.2G073300_v2.0.a1
pyrus_communis	pycom07g04790
rosa_chinensis	RchiOBHm_Chr1g0332061
rosa_laevigata	RLG00000029695
rosa_multiflora	Rmu_sc0003358.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318410
rosa_rugosa	Rorug01G0098100
rosa_samantha	Rh1AG122000 Rh1BG093400 Rh1CG116600 Rh1DG127700
rosa_wichuraiana	Rw1G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
AatII	GACGTC	1 cut(s)	342
AciI	CCGC	2 cut(s)	59, 255
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	3 cut(s)	15, 184, 280
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	3 cut(s)	95, 249, 533
AluI	AGCT	3 cut(s)	95, 249, 533
Alw21I	GWGCWC	2 cut(s)	424, 535
Alw26I	GTCTC	3 cut(s)	108, 346, 498
Ama87I	CYCGRG	1 cut(s)	200
ApeKI	GCWGC	4 cut(s)	249, 458, 506, 593
ApoI	RAATTY	1 cut(s)	295
AspLEI	GCGC	3 cut(s)	80, 395, 433
AspS9I	GGNCC	3 cut(s)	129, 165, 287
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	3 cut(s)	129, 165, 287
BanII	GRGCYC	1 cut(s)	535
BauI	CACGAG	1 cut(s)	386
Bbv12I	GWGCWC	2 cut(s)	424, 535
BbvI	GCAGC	4 cut(s)	236, 445, 518, 605
BccI	CCATC	3 cut(s)	140, 478, 544
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BcoDI	GTCTC	3 cut(s)	108, 346, 498
BfaI	CTAG	2 cut(s)	84, 359
BfmI	CTRYAG	4 cut(s)	352, 459, 504, 591
BfoI	RGCGCY	1 cut(s)	434
BisI	GCNGC	4 cut(s)	250, 459, 507, 594
BlsI	GCNGC	4 cut(s)	251, 460, 508, 595
Bme18I	GGWCC	3 cut(s)	129, 165, 287
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	3 cut(s)	129, 165, 287
BmiI	GGNNCC	1 cut(s)	559
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	605, 609
BmuI	ACTGGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	507
Bpu14I	TTCGAA	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	339
BsaI	GGTCTC	2 cut(s)	108, 498
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 562, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	2 cut(s)	119, 167
BseGI	GGATG	3 cut(s)	132, 536, 671
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	114, 509
BseNI	ACTGG	2 cut(s)	119, 167
BseXI	GCAGC	4 cut(s)	236, 445, 518, 605
BsgI	GTGCAG	1 cut(s)	235
Bsh1285I	CGRYCG	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	146
BsiHKAI	GWGCWC	2 cut(s)	424, 535
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	3 cut(s)	108, 346, 498
BsmBI	CGTCTC	1 cut(s)	346
Bso31I	GGTCTC	2 cut(s)	108, 498
BsoBI	CYCGRG	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	424, 535
BspACI	CCGC	2 cut(s)	59, 255
BspCNI	CTCAG	2 cut(s)	113, 508
BspLI	GGNNCC	1 cut(s)	559
BspMAI	CTGCAG	3 cut(s)	463, 508, 595
BspT104I	TTCGAA	1 cut(s)	212
BspTNI	GGTCTC	2 cut(s)	108, 498
BsrI	ACTGG	2 cut(s)	119, 167
BssNI	GRCGYC	1 cut(s)	339
BssSI	CACGAG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	386
Bst4CI	ACNGT	2 cut(s)	287, 353
BstACI	GRCGYC	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	3 cut(s)	100, 495, 567
BstF5I	GGATG	3 cut(s)	132, 536, 671
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	3 cut(s)	80, 395, 433
BstMAI	GTCTC	3 cut(s)	108, 346, 498
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstSFI	CTRYAG	4 cut(s)	352, 459, 504, 591
BstV1I	GCAGC	4 cut(s)	236, 445, 518, 605
BstXI	CCANNNNNNTGG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	132, 536, 671
BtsIMutI	CAGTG	2 cut(s)	108, 126
Cac8I	GCNNGC	1 cut(s)	397
CfoI	GCGC	3 cut(s)	80, 395, 433
Cfr13I	GGNCC	3 cut(s)	129, 165, 287
CviAII	CATG	1 cut(s)	635
CviJI	RGCY	6 cut(s)	95, 208, 249, 499, 533, 648
CviKI_1	RGCY	6 cut(s)	95, 208, 249, 499, 533, 648
DdeI	CTNAG	3 cut(s)	100, 495, 567
DraI	TTTAAA	1 cut(s)	271
DraIII	CACNNNGTG	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	535
Eco31I	GGTCTC	2 cut(s)	108, 498
Eco47I	GGWCC	3 cut(s)	129, 165, 287
Eco53kI	GAGCTC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	533
EcoT38I	GRGCYC	1 cut(s)	535
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	1 cut(s)	638
FaiI	YATR	6 cut(s)	72, 325, 518, 552, 609, 636
FatI	CATG	1 cut(s)	634
Fnu4HI	GCNGC	4 cut(s)	250, 459, 507, 594
FokI	GGATG	3 cut(s)	119, 523, 658
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	4 cut(s)	250, 459, 507, 594
FspBI	CTAG	2 cut(s)	84, 359
GlaI	GCGC	3 cut(s)	79, 394, 432
GluI	GCNGC	4 cut(s)	250, 459, 507, 594
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	434
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	3 cut(s)	80, 395, 433
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	638
Hin6I	GCGC	3 cut(s)	78, 393, 431
HinP1I	GCGC	3 cut(s)	78, 393, 431
HinfI	GANTC	1 cut(s)	639
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	486
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	2 cut(s)	287, 353
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	5 cut(s)	223, 252, 461, 506, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	3 cut(s)	100, 495, 567
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	638
HspAI	GCGC	3 cut(s)	78, 393, 431
LmnI	GCTCC	4 cut(s)	85, 427, 530, 538
Lsp1109I	GCAGC	4 cut(s)	236, 445, 518, 605
LweI	GCATC	2 cut(s)	605, 609
MaeI	CTAG	2 cut(s)	84, 359
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	19, 226
MboII	GAAGA	5 cut(s)	172, 268, 379, 465, 623
MhlI	GDGCHC	2 cut(s)	424, 535
MluCI	AATT	3 cut(s)	169, 295, 676
MmeI	TCCRAC	2 cut(s)	288, 449
MnlI	CCTC	5 cut(s)	147, 477, 510, 571, 588
MseI	TTAA	3 cut(s)	270, 405, 679
MspI	CCGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	428
NlaIII	CATG	1 cut(s)	638
NlaIV	GGNNCC	1 cut(s)	559
NmuCI	GTSAC	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	639
PkrI	GCNGC	4 cut(s)	251, 460, 508, 595
PsiI	TTATAA	1 cut(s)	518
Psp124BI	GAGCTC	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	3 cut(s)	129, 165, 287
PstI	CTGCAG	3 cut(s)	463, 508, 595
SacI	GAGCTC	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	270, 405, 679
SatI	GCNGC	4 cut(s)	250, 459, 507, 594
Sau96I	GGNCC	3 cut(s)	129, 165, 287
SduI	GDGCHC	2 cut(s)	424, 535
SetI	ASST	6 cut(s)	97, 251, 319, 342, 494, 535
SfaNI	GCATC	2 cut(s)	605, 609
SfcI	CTRYAG	4 cut(s)	352, 459, 504, 591
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	3 cut(s)	129, 165, 287
Sse9I	AATT	3 cut(s)	169, 295, 676
SsiI	CCGC	2 cut(s)	59, 255
SspMI	CTAG	2 cut(s)	84, 359
SstI	GAGCTC	1 cut(s)	535
TaaI	ACNGT	2 cut(s)	287, 353
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	212
TasI	AATT	3 cut(s)	169, 295, 676
TfiI	GAWTC	1 cut(s)	639
Tru1I	TTAA	3 cut(s)	270, 405, 679
Tru9I	TTAA	3 cut(s)	270, 405, 679
TscAI	CASTG	2 cut(s)	108, 126
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	4 cut(s)	249, 458, 506, 593
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	319, 623
TspRI	CASTG	2 cut(s)	108, 126
VpaK11BI	GGWCC	3 cut(s)	129, 165, 287
XapI	RAATTY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	2 cut(s)	84, 359
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.