Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016912

Physical Location & Seq

Genomic Coordinates Reverse (-)

16248849 .. 16254007

Gene Structure 5159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0098100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGAGCGTAATCTGAGAAATGATTCTGAATCTCCAGTGAGGGACCATGGGTATCCTCATAGAAGGAGTCCCTCGAGGAAGAGTCAATCTCGAATAGAGAGATTGACTCTCGAAAGTTGTCATGCTGGGTTCCCGATGGATTCTGAAGCAGAAGTTCTTGAGGAGAAGCTGACGTCTTTGTTTGGTCAGCTCCGAGCTGAGTGTGCTATTCTTGAAAGAGTGGTCTACAAGAACAAGAACCAGCATAGACGTTCCTCGTACTTCCAGTACCTAATGAAGGTAAGGAGGGATTTGAGGCTTTTACAATCAACTAAGTTGGAGGGGATTATGGGCTGCTGTTTCCAAAGTATCACTGGAAAGAGACCCAAGCAAAAGGTGCATCTATTAGAAAGTTTGAAGAGAAGAAAATGTGAAAGTGGAAAATATAATTTCATGGAACGACTTCTGGGAGCTGCACGTCTTCTATCACAGATGGTTGAACCAATGTTGAAGGCTGCTATTCAGATATCTGCATTGCTGGCTCGATCTTTTTTCATGGGATTCTCTTTGACTATCTTAGCTTTGCTTGCACGACTTCGAGTTTTGGTTCAACAGATTCTGCTTGATGTTGTTTCAGTATTCAACATGGTTTCTTCTCTCTCCCAAAAGAAGCAATCAGTTAAAATAAATCAAGGAGTTGAGGTCTTCAGGGAGTTTTACCCTACACAAGAGGATTTTATCACTCTGGAGTGCGTGTGGAAATCTGATAAATTTGACTTGCTTGAGAGGACACAAAAGAGCCAGATTGCAAGTCCTGGTGTGGATCTTTCTTTAGGGACATCATCTGTGCTTTATCGAAGTATTGAGTCTTCCCTTGGAGCCTTGGCTGTGAGTCGTTGTGTGACTGTCTCTTCCATGTGGGTAATGATATTTCAACATTTTCTCCCTAGTATACAAGTATCACAGAGTGTGCCCAGCTTCCTACTAGTTTTCAGTAGGGCTGGCAAATCCTCCCGAGACAAACCAGCCAACCGTGTACCAACCGAACCAAACAAGTTGGTTACCGAAAATGTTGGCTACCGAAGTATTGGTACGCCCCTCGAGCCCTCGAGGCCTCGAAGGCTTGAGGCTCGAATCGAGCCCTTTCTCTCAGATTCAATCACTCAAAGTCTCAAACCCTCTCCGGCTCTCGATTCGATTCAAACCCAGAACTCTTCGATTCGATTCGATTCGATTCGAGGCCTCGAAGGCTTGAAGTTCGATTCGATAAAAGCTTCAAACCCAGAAAATCTCGTATCTAATCAGAGATTCATGGCCTACGGCCGAAGTTCGATTCGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

440

Amino Acids

50.0

Weight (kDa)

9.92

Isoelectric Point (pI)

64.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NEPRO_N	PF14780	55 - 208	2.5e-14	Nucleolus and neural progenitor protein, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05250
malus_domestica	MD07G1062400.v1.1
prunus_persica	Prupe.2G073300_v2.0.a1
pyrus_communis	pycom07g04790
rosa_chinensis	RchiOBHm_Chr1g0332061
rosa_laevigata	RLG00000029695
rosa_multiflora	Rmu_sc0003358.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318410
rosa_rugosa	Rorug01G0098100
rosa_samantha	Rh1AG122000 Rh1BG093400 Rh1CG116600 Rh1DG127700
rosa_wichuraiana	Rw1G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	176
AbsI	CCTCGAGG	2 cut(s)	73, 1087
AccI	GTMKAC	2 cut(s)	225, 931
AclWI	GGATC	1 cut(s)	810
AcoI	YGGCCR	1 cut(s)	1300
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	2 cut(s)	165, 670
AcyI	GRCGYC	1 cut(s)	173
AdeI	CACNNNGTG	1 cut(s)	947
AfaI	GTAC	4 cut(s)	260, 269, 1017, 1072
AfiI	CCNNNNNNNGG	1 cut(s)	277
AhlI	ACTAGT	1 cut(s)	964
AjiI	CACGTC	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	793
AluBI	AGCT	7 cut(s)	169, 190, 197, 452, 560, 957, 1253
AluI	AGCT	7 cut(s)	169, 190, 197, 452, 560, 957, 1253
Alw26I	GTCTC	4 cut(s)	355, 892, 990, 1154
AlwI	GGATC	1 cut(s)	810
AlwNI	CAGNNNCTG	1 cut(s)	598
Ama87I	CYCGRG	4 cut(s)	73, 993, 1079, 1087
AoxI	GGCC	4 cut(s)	1091, 1219, 1293, 1300
ApeKI	GCWGC	3 cut(s)	333, 452, 494
ApoI	RAATTY	1 cut(s)	749
Asp700I	GAANNNNTTC	2 cut(s)	22, 441
AspS9I	GGNCC	1 cut(s)	43
AvaI	CYCGRG	4 cut(s)	73, 993, 1079, 1087
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	954
BanII	GRGCYC	2 cut(s)	1086, 1122
BarI	GAAGNNNNNNTAC	4 cut(s)	832, 864, 1054, 1086
BbsI	GAAGAC	3 cut(s)	452, 676, 840
BbvI	GCAGC	3 cut(s)	320, 439, 481
BccI	CCATC	2 cut(s)	130, 466
BceAI	ACGGC	1 cut(s)	1315
BciT130I	CCWGG	1 cut(s)	795
BciVI	GTATCC	1 cut(s)	63
BcoDI	GTCTC	4 cut(s)	355, 892, 990, 1154
BcuI	ACTAGT	1 cut(s)	964
BfaI	CTAG	2 cut(s)	927, 965
BfuI	GTATCC	1 cut(s)	63
BglI	GCCNNNNNGGC	3 cut(s)	1090, 1099, 1227
BisI	GCNGC	3 cut(s)	334, 453, 495
BlsI	GCNGC	3 cut(s)	335, 454, 496
Bme1390I	CCNGG	1 cut(s)	795
Bme18I	GGWCC	1 cut(s)	43
BmeT110I	CYCGRG	4 cut(s)	73, 993, 1079, 1087
BmgBI	CACGTC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	3 cut(s)	44, 131, 859
BmrFI	CCNGG	1 cut(s)	795
BmsI	GCATC	1 cut(s)	388
BpiI	GAAGAC	3 cut(s)	452, 676, 840
BplI	GAGNNNNNCTC	4 cut(s)	73, 105, 91, 123
BpmI	CTGGAG	2 cut(s)	18, 746
BpuEI	CTTGAG	3 cut(s)	179, 782, 1124
BsaHI	GRCGYC	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	3 cut(s)	46, 853, 861
BsaXI	ACNNNNNCTCC	6 cut(s)	666, 696, 719, 749, 906, 936
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	3 cut(s)	35, 265, 358
Bse3DI	GCAATG	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	795
BseDI	CCNNGG	3 cut(s)	46, 853, 861
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	3 cut(s)	5, 189, 1143
BseNI	ACTGG	3 cut(s)	35, 265, 358
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	954
BseX3I	CGGCCG	1 cut(s)	1300
BseXI	GCAGC	3 cut(s)	320, 439, 481
BseYI	CCCAGC	2 cut(s)	125, 953
BsgI	GTGCAG	1 cut(s)	438
Bsh1285I	CGRYCG	1 cut(s)	1303
BshFI	GGCC	4 cut(s)	1093, 1221, 1295, 1302
BsiEI	CGRYCG	1 cut(s)	1303
BsiHKCI	CYCGRG	4 cut(s)	73, 993, 1079, 1087
BsiSI	CCGG	1 cut(s)	1163
BslFI	GGGAC	3 cut(s)	54, 56, 829
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	4 cut(s)	355, 892, 990, 1154
BsmFI	GGGAC	3 cut(s)	54, 56, 829
BsnI	GGCC	4 cut(s)	1093, 1221, 1295, 1302
Bso31I	GGTCTC	1 cut(s)	355
BsoBI	CYCGRG	4 cut(s)	73, 993, 1079, 1087
Bsp1286I	GDGCHC	3 cut(s)	954, 1086, 1122
Bsp143I	GATC	2 cut(s)	524, 802
Bsp19I	CCATGG	1 cut(s)	46
BspANI	GGCC	4 cut(s)	1093, 1221, 1295, 1302
BspCNI	CTCAG	3 cut(s)	6, 190, 1142
BspLI	GGNNCC	3 cut(s)	44, 131, 859
BspPI	GGATC	1 cut(s)	810
BspTNI	GGTCTC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	512
BsrI	ACTGG	3 cut(s)	35, 265, 358
BssECI	CCNNGG	3 cut(s)	46, 853, 861
BssMI	GATC	2 cut(s)	524, 802
BssNAI	GTATAC	1 cut(s)	932
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	3 cut(s)	46, 853, 861
Bst1107I	GTATAC	1 cut(s)	932
Bst2UI	CCWGG	1 cut(s)	795
Bst4CI	ACNGT	2 cut(s)	886, 1013
Bst6I	CTCTTC	4 cut(s)	74, 392, 895, 1198
BstACI	GRCGYC	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	519, 567, 982
BstDEI	CTNAG	5 cut(s)	14, 198, 312, 556, 1129
BstDSI	CCRYGG	1 cut(s)	46
BstEII	GGTNACC	1 cut(s)	1039
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	527, 805
BstMAI	GTCTC	4 cut(s)	355, 892, 990, 1154
BstMBI	GATC	2 cut(s)	524, 802
BstMCI	CGRYCG	1 cut(s)	1303
BstMWI	GCNNNNNNNGC	8 cut(s)	203, 376, 518, 566, 1081, 1090, 1099, 1227
BstNI	CCWGG	1 cut(s)	795
BstPI	GGTNACC	1 cut(s)	1039
BstSCI	CCNGG	1 cut(s)	793
BstSLI	GKGCMC	1 cut(s)	954
BstV1I	GCAGC	3 cut(s)	320, 439, 481
BstV2I	GAAGAC	3 cut(s)	452, 676, 840
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BstZ17I	GTATAC	1 cut(s)	932
BstZI	CGGCCG	1 cut(s)	1300
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	4 cut(s)	1093, 1221, 1295, 1302
BtgI	CCRYGG	1 cut(s)	46
BtrI	CACGTC	1 cut(s)	458
BtsIMutI	CAGTG	2 cut(s)	42, 351
Cac8I	GCNNGC	3 cut(s)	519, 567, 982
CaiI	CAGNNNCTG	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	43
Csp6I	GTAC	4 cut(s)	259, 268, 1016, 1071
CviAII	CATG	7 cut(s)	47, 122, 433, 535, 625, 895, 1291
CviQI	GTAC	4 cut(s)	259, 268, 1016, 1071
DdeI	CTNAG	5 cut(s)	14, 198, 312, 556, 1129
DpnI	GATC	2 cut(s)	526, 804
DpnII	GATC	2 cut(s)	524, 802
DraIII	CACNNNGTG	1 cut(s)	947
EaeI	YGGCCR	1 cut(s)	1300
EagI	CGGCCG	1 cut(s)	1300
Eam1104I	CTCTTC	4 cut(s)	74, 392, 895, 1198
EarI	CTCTTC	4 cut(s)	74, 392, 895, 1198
EclXI	CGGCCG	1 cut(s)	1300
Eco130I	CCWWGG	3 cut(s)	46, 853, 861
Eco147I	AGGCCT	2 cut(s)	1093, 1221
Eco24I	GRGCYC	2 cut(s)	1086, 1122
Eco31I	GGTCTC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	43
Eco52I	CGGCCG	1 cut(s)	1300
Eco57I	CTGAAG	2 cut(s)	165, 670
Eco88I	CYCGRG	4 cut(s)	73, 993, 1079, 1087
Eco91I	GGTNACC	1 cut(s)	1039
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	1039
EcoRII	CCWGG	1 cut(s)	793
EcoRV	GATATC	1 cut(s)	507
EcoT14I	CCWWGG	3 cut(s)	46, 853, 861
EcoT38I	GRGCYC	2 cut(s)	1086, 1122
ErhI	CCWWGG	3 cut(s)	46, 853, 861
FaeI	CATG	7 cut(s)	50, 125, 436, 538, 628, 898, 1294
FaqI	GGGAC	3 cut(s)	54, 56, 829
FatI	CATG	7 cut(s)	46, 121, 432, 534, 624, 894, 1290
FblI	GTMKAC	2 cut(s)	225, 931
Fnu4HI	GCNGC	3 cut(s)	334, 453, 495
FriOI	GRGCYC	2 cut(s)	1086, 1122
Fsp4HI	GCNGC	3 cut(s)	334, 453, 495
FspBI	CTAG	2 cut(s)	927, 965
GluI	GCNGC	3 cut(s)	334, 453, 495
GsaI	CCCAGC	2 cut(s)	129, 957
GsuI	CTGGAG	2 cut(s)	18, 746
HaeIII	GGCC	4 cut(s)	1093, 1221, 1295, 1302
HapII	CCGG	1 cut(s)	1163
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	7 cut(s)	50, 125, 436, 538, 628, 898, 1294
HindIII	AAGCTT	1 cut(s)	1251
HpaII	CCGG	1 cut(s)	1163
Hpy166II	GTNNAC	3 cut(s)	226, 932, 1016
Hpy188I	TCNGA	8 cut(s)	15, 28, 145, 194, 504, 745, 1132, 1284
Hpy188III	TCNNGA	8 cut(s)	90, 110, 133, 158, 212, 725, 993, 1169
Hpy8I	GTNNAC	3 cut(s)	226, 932, 1016
HpyAV	CCTTC	5 cut(s)	57, 271, 484, 1092, 1220
HpyCH4III	ACNGT	2 cut(s)	886, 1013
HpyCH4IV	ACGT	3 cut(s)	173, 250, 457
HpyCH4V	TGCA	5 cut(s)	379, 455, 512, 569, 788
HpyF10VI	GCNNNNNNNGC	8 cut(s)	203, 376, 518, 566, 1081, 1090, 1099, 1227
HpyF3I	CTNAG	5 cut(s)	14, 198, 312, 556, 1129
HpySE526I	ACGT	3 cut(s)	173, 250, 457
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	7 cut(s)	50, 125, 436, 538, 628, 898, 1294
Kzo9I	GATC	2 cut(s)	524, 802
LmnI	GCTCC	4 cut(s)	4, 195, 449, 857
Lsp1109I	GCAGC	3 cut(s)	320, 439, 481
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	927, 965
MaeII	ACGT	3 cut(s)	173, 250, 457
MaeIII	GTNAC	2 cut(s)	880, 1039
MalI	GATC	2 cut(s)	526, 804
MboI	GATC	2 cut(s)	524, 802
MboII	GAAGA	9 cut(s)	91, 409, 414, 452, 624, 676, 840, 882, 1185
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	3 cut(s)	954, 1086, 1122
MluCI	AATT	2 cut(s)	427, 749
MlyI	GAGTC	5 cut(s)	76, 91, 100, 854, 880
MmeI	TCCRAC	1 cut(s)	297
MroXI	GAANNNNTTC	2 cut(s)	22, 441
MseI	TTAA	1 cut(s)	660
MspI	CCGG	1 cut(s)	1163
MspR9I	CCNGG	1 cut(s)	795
MvaI	CCWGG	1 cut(s)	795
MwoI	GCNNNNNNNGC	8 cut(s)	203, 376, 518, 566, 1081, 1090, 1099, 1227
NcoI	CCATGG	1 cut(s)	46
NdeII	GATC	2 cut(s)	524, 802
NlaIII	CATG	7 cut(s)	50, 125, 436, 538, 628, 898, 1294
NlaIV	GGNNCC	3 cut(s)	44, 131, 859
NmuCI	GTSAC	1 cut(s)	880
PaeR7I	CTCGAG	3 cut(s)	73, 1079, 1087
PceI	AGGCCT	2 cut(s)	1093, 1221
PdmI	GAANNNNTTC	2 cut(s)	22, 441
PkrI	GCNGC	3 cut(s)	335, 454, 496
PleI	GAGTC	5 cut(s)	75, 90, 100, 853, 879
PpsI	GAGTC	5 cut(s)	75, 90, 100, 853, 879
Psp6I	CCWGG	1 cut(s)	793
PspEI	GGTNACC	1 cut(s)	1039
PspFI	CCCAGC	2 cut(s)	125, 953
PspGI	CCWGG	1 cut(s)	793
PspN4I	GGNNCC	3 cut(s)	44, 131, 859
PspPI	GGNCC	1 cut(s)	43
PspXI	VCTCGAGB	3 cut(s)	73, 1079, 1087
PstNI	CAGNNNCTG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	802
RsaI	GTAC	4 cut(s)	260, 269, 1017, 1072
RsaNI	GTAC	4 cut(s)	259, 268, 1016, 1071
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	3 cut(s)	334, 453, 495
Sau3AI	GATC	2 cut(s)	524, 802
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	5 cut(s)	76, 91, 100, 854, 880
ScrFI	CCNGG	1 cut(s)	795
SduI	GDGCHC	3 cut(s)	954, 1086, 1122
SfaNI	GCATC	1 cut(s)	388
Sfr274I	CTCGAG	3 cut(s)	73, 1079, 1087
SinI	GGWCC	1 cut(s)	43
SlaI	CTCGAG	3 cut(s)	73, 1079, 1087
SmlI	CTYRAG	6 cut(s)	73, 158, 761, 1079, 1087, 1103
SmoI	CTYRAG	6 cut(s)	73, 158, 761, 1079, 1087, 1103
SpeI	ACTAGT	1 cut(s)	964
Sse9I	AATT	2 cut(s)	427, 749
SseBI	AGGCCT	2 cut(s)	1093, 1221
SspMI	CTAG	2 cut(s)	927, 965
StuI	AGGCCT	2 cut(s)	1093, 1221
StyD4I	CCNGG	1 cut(s)	793
StyI	CCWWGG	3 cut(s)	46, 853, 861
TaaI	ACNGT	2 cut(s)	886, 1013
TaiI	ACGT	3 cut(s)	176, 253, 460
TasI	AATT	2 cut(s)	427, 749
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	2 cut(s)	42, 358
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	3 cut(s)	333, 452, 494
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	4 cut(s)	290, 421, 523, 1279
TspRI	CASTG	2 cut(s)	42, 358
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XhoI	CTCGAG	3 cut(s)	73, 1079, 1087
XmiI	GTMKAC	2 cut(s)	225, 931
XmnI	GAANNNNTTC	2 cut(s)	22, 441
XspI	CTAG	2 cut(s)	927, 965
ZraI	GACGTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.