Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016912

Physical Location & Seq

Genomic Coordinates Reverse (-)

5863469 .. 5864681

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1062400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATGGCGGCGGCTGCGGTGGGTTTGGTTGTTCCTGAGTCACTTGGTTGCATACCGACTCCGAGTGGTGGTGTGAAATACCCAGTCGGAGACGACTTTTGGGCCATTCATCCAAACCCTGATTACTACACAAACTGGTCCTCTAACCATTTCTTCAAGATCGGTGACTCCCTCGTTTTTGCATTCGAAACGGGGCGTTACAACGTCCTGCAAGTAACAAAGCAAGAGTATGAGAAGTGCACAGGTTACAAGCCACTGAAAGTGTTCAACACTGGTCCCGTGACTATTCCATTGGAAGAAAAGGGTGTGTTTTACTACATCTGCAACATCTCTACGTACTGTAGTCTTGGCCAGAAGATTTCTATTAAAGTTAACGAATGCCCTTGCCCACTACCAAGTCCACCTCCGTCTTCCCCGCCTCCTGCTTCTCCAACTCCTGTTCCTCCGTCTTCACCACCACTCATATCAACTCCTCCGCCATCTCCAAGCAGCCCTAACGGGTCCCAGCCTCCTTATGTGCAGGTTACAAGTCCAGCTCCGTCGCCAGTTGATAATGGTTCTCCTGAGGGTCCTTCAAACTCTGCTGCATTGATGCATAAGGGGTTGTTTGGTGTTGGTTTTGGGGTGCTACTCCTCGTTTTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

216

Amino Acids

22.72

Weight (kDa)

5.86

Isoelectric Point (pI)

65.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	35 - 118	3e-21	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05250
malus_domestica	MD07G1062400.v1.1
prunus_persica	Prupe.2G073300_v2.0.a1
pyrus_communis	pycom07g04790
rosa_chinensis	RchiOBHm_Chr1g0332061
rosa_laevigata	RLG00000029695
rosa_multiflora	Rmu_sc0003358.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318410
rosa_rugosa	Rorug01G0098100
rosa_samantha	Rh1AG122000 Rh1BG093400 Rh1CG116600 Rh1DG127700
rosa_wichuraiana	Rw1G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	511
AciI	CCGC	5 cut(s)	8, 11, 17, 416, 476
AcoI	YGGCCR	1 cut(s)	349
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	157, 268, 576
AluBI	AGCT	1 cut(s)	536
AluI	AGCT	1 cut(s)	536
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	84
Alw44I	GTGCAC	1 cut(s)	238
AoxI	GGCC	2 cut(s)	102, 349
ApaLI	GTGCAC	1 cut(s)	238
ApeKI	GCWGC	3 cut(s)	14, 489, 584
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	5 cut(s)	102, 138, 275, 501, 569
AsuHPI	GGTGA	2 cut(s)	176, 444
AsuII	TTCGAA	1 cut(s)	186
AvaII	GGWCC	4 cut(s)	138, 275, 501, 569
AxyI	CCTNAGG	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	351
BbsI	GAAGAC	2 cut(s)	402, 441
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	501, 571
BccI	CCATC	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	511
BisI	GCNGC	5 cut(s)	9, 12, 15, 490, 585
BlsI	GCNGC	5 cut(s)	10, 13, 16, 491, 586
Bme18I	GGWCC	4 cut(s)	138, 275, 501, 569
BmgT120I	GGNCC	5 cut(s)	102, 138, 275, 501, 569
BmiI	GGNNCC	4 cut(s)	277, 502, 503, 570
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	582
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	2 cut(s)	402, 441
Bpu14I	TTCGAA	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	4 cut(s)	83, 140, 277, 545
Bse21I	CCTNAGG	1 cut(s)	564
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	27, 555
BseNI	ACTGG	4 cut(s)	83, 140, 277, 545
BseRI	GAGGAG	2 cut(s)	462, 623
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	501, 571
BseYI	CCCAGC	1 cut(s)	504
BsgI	GTGCAG	1 cut(s)	539
BshFI	GGCC	2 cut(s)	104, 351
BsiHKAI	GWGCWC	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	261, 487
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	84
BsmBI	CGTCTC	1 cut(s)	84
BsmFI	GGGAC	2 cut(s)	261, 487
BsmI	GAATGC	2 cut(s)	182, 383
BsnI	GGCC	2 cut(s)	104, 351
Bsp119I	TTCGAA	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	5 cut(s)	8, 11, 17, 416, 476
BspANI	GGCC	2 cut(s)	104, 351
BspCNI	CTCAG	2 cut(s)	28, 556
BspLI	GGNNCC	4 cut(s)	277, 502, 503, 570
BspMI	ACCTGC	1 cut(s)	511
BspT104I	TTCGAA	1 cut(s)	186
BsrI	ACTGG	4 cut(s)	83, 140, 277, 545
BssMI	GATC	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	36, 564
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	242
BstSNI	TACGTA	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	501, 571
BstV2I	GAAGAC	2 cut(s)	402, 441
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	104, 351
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	254, 270
BveI	ACCTGC	1 cut(s)	511
Cfr13I	GGNCC	5 cut(s)	102, 138, 275, 501, 569
Csp6I	GTAC	1 cut(s)	337
CviJI	RGCY	7 cut(s)	14, 104, 253, 351, 492, 508, 536
CviKI_1	RGCY	7 cut(s)	14, 104, 253, 351, 492, 508, 536
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	36, 564
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	349
EciI	GGCGGA	1 cut(s)	465
Eco105I	TACGTA	1 cut(s)	336
Eco47I	GGWCC	4 cut(s)	138, 275, 501, 569
Eco81I	CCTNAGG	1 cut(s)	564
EcoO109I	RGGNCCY	2 cut(s)	501, 569
EcoT22I	ATGCAT	1 cut(s)	597
Esp3I	CGTCTC	1 cut(s)	84
FaiI	YATR	5 cut(s)	53, 231, 464, 516, 597
FaqI	GGGAC	2 cut(s)	261, 487
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	5 cut(s)	9, 12, 15, 490, 585
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	5 cut(s)	9, 12, 15, 490, 585
GluI	GCNGC	5 cut(s)	9, 12, 15, 490, 585
GsaI	CCCAGC	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	104, 351
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	3 cut(s)	38, 58, 167
HpaI	GTTAAC	1 cut(s)	373
HphI	GGTGA	2 cut(s)	176, 444
Hpy166II	GTNNAC	3 cut(s)	240, 373, 401
Hpy188I	TCNGA	2 cut(s)	63, 89
Hpy188III	TCNNGA	3 cut(s)	35, 157, 563
Hpy8I	GTNNAC	3 cut(s)	240, 373, 401
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	1 cut(s)	582
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	2 cut(s)	204, 335
HpyCH4V	TGCA	8 cut(s)	51, 182, 211, 240, 324, 520, 587, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	36, 564
HpySE526I	ACGT	2 cut(s)	204, 335
KflI	GGGWCCC	1 cut(s)	501
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	2 cut(s)	501, 571
LweI	GCATC	1 cut(s)	582
MaeII	ACGT	2 cut(s)	204, 335
MaeIII	GTNAC	7 cut(s)	39, 164, 197, 214, 245, 280, 523
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	5 cut(s)	145, 308, 367, 402, 441
MhlI	GDGCHC	1 cut(s)	242
MlsI	TGGCCA	1 cut(s)	351
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	3 cut(s)	47, 52, 161
MmeI	TCCRAC	2 cut(s)	67, 455
MnlI	CCTC	9 cut(s)	151, 182, 414, 429, 453, 483, 519, 559, 644
Mox20I	TGGCCA	1 cut(s)	351
Mph1103I	ATGCAT	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	2 cut(s)	366, 372
Msp20I	TGGCCA	1 cut(s)	351
Mva1269I	GAATGC	2 cut(s)	182, 383
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	159
NlaIV	GGNNCC	4 cut(s)	277, 502, 503, 570
NmuCI	GTSAC	3 cut(s)	39, 164, 280
NsiI	ATGCAT	1 cut(s)	597
NspV	TTCGAA	1 cut(s)	186
PctI	GAATGC	2 cut(s)	182, 383
PdmI	GAANNNNTTC	1 cut(s)	263
PkrI	GCNGC	5 cut(s)	10, 13, 16, 491, 586
PleI	GAGTC	3 cut(s)	46, 52, 161
PpsI	GAGTC	3 cut(s)	46, 52, 161
Ppu21I	YACGTR	1 cut(s)	336
PpuMI	RGGWCCY	2 cut(s)	501, 569
Psp5II	RGGWCCY	2 cut(s)	501, 569
PspFI	CCCAGC	1 cut(s)	504
PspN4I	GGNNCC	4 cut(s)	277, 502, 503, 570
PspPI	GGNCC	5 cut(s)	102, 138, 275, 501, 569
PspPPI	RGGWCCY	2 cut(s)	501, 569
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	366, 372
SatI	GCNGC	5 cut(s)	9, 12, 15, 490, 585
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	5 cut(s)	102, 138, 275, 501, 569
SchI	GAGTC	3 cut(s)	47, 52, 161
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	6 cut(s)	207, 247, 338, 406, 525, 538
SfaNI	GCATC	1 cut(s)	582
SfcI	CTRYAG	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	186
SinI	GGWCC	4 cut(s)	138, 275, 501, 569
SnaBI	TACGTA	1 cut(s)	336
SsiI	CCGC	5 cut(s)	8, 11, 17, 416, 476
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	2 cut(s)	207, 338
TaqI	TCGA	1 cut(s)	186
TauI	GCSGC	2 cut(s)	11, 14
Tru1I	TTAA	2 cut(s)	366, 372
Tru9I	TTAA	2 cut(s)	366, 372
TscAI	CASTG	2 cut(s)	261, 277
TseFI	GTSAC	3 cut(s)	39, 164, 280
TseI	GCWGC	3 cut(s)	14, 489, 584
Tsp45I	GTSAC	3 cut(s)	39, 164, 280
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	3 cut(s)	396, 435, 528
TspRI	CASTG	2 cut(s)	261, 277
VneI	GTGCAC	1 cut(s)	238
VpaK11BI	GGWCC	4 cut(s)	138, 275, 501, 569
XmnI	GAANNNNTTC	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.