Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0018871

Physical Location & Seq

Genomic Coordinates Forward (+)

5722214 .. 5724174

Gene Structure 1961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTACTAATTACATTTCTCCTTTCTCGAATGCAAAAAAGCATTCAACAAAACTACAGACATTCCAAGCAGCATATCGAAAGGGGCACCGGATTTCTGCACTGTGTATGTCATTGGCAAGGGAAAGAGCAGAGCAAAGGAGGAATGCAGAAATAAAGGGTCTCAAAGAAGCTGAAAAGAGGACGAACTCACTAGGAGGAAGGAGTTATGATCCACGGTACAGGAAATACTCGATTCAAGAGATTGAGGCAGCAACAGACAATTTTTCAAAAGCTCTCAAGATTGGAGAAGGTGGATATGGGCCTGTGTATGTAGGTGAGCTGGATCACACACAAGTGGCAATAAAAGCTCTACGTCCTGATGCAGCTCAAGGACGGTCACAGTTCCAACAAGAGATTGAAGTTTTGAGCTGCATTAGACATCCAAACATGGTTCTCTTGCTTGGAGCCTGCCCAGAGTATGGTTGTCTGATCTATGAGTACATGGCTAATGGGAGCTTAGAAGACCGTCTGTTTCGACAAGGTAACACACCAGTTATTCCTTGGCAGCAAAGCAAGATTAGTGATGTAGGTCTGGCAAGGCTTGTCCCTCCATCAGTAGCTGACTCAGTCACTCAGTATCACATGACATCAGCTGCTGGGACATTCTGTTATATCGACCCAGAGTATCAACAAACTGGCTTGCTTGGAACAAAATCTGATATCTACTCACTTGGGGTCATGCTTCTACAAATAATAACAGCGAAACAAGCAATGGGTTTGACTCATCTTGTTGAGCATGCCATTGAGATAGGGACCTTCGCTGAGATGCTTGACCCTGCTGTTCCTGACTGGCCCTTCGAGGAAGCGTTGAAGTTTGCCAAGTTAGCATTACAATGTGCTCAAATGAGGAGAAAAGACAGACCCGATCTAGGGACGGTTGTGCTACCTGAGCTTAACAGATTGAGAGAACTTGGCGAAAAGGGTGGAGGAGCATTCTCAATACAGATGTGCTCAGTTTCCACAAAGCCAGTGAGTTCCATAGTAACGTACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

346

Amino Acids

38.28

Weight (kDa)

8.56

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	91 - 175	9.4e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	94 - 177	2.1e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	184 - 302	2.4e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	185 - 307	1.1e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05410 FvH4_7g05450
rosa_chinensis	RchiOBHm_Chr4g0397661
rosa_samantha	Rh2AG371200 Rh2CG359500 Rh2DG382200 Rh4AG079600 Rh4CG085600 Rh4DG072800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AccB7I	CCANNNNNTGG	1 cut(s)	461
AclWI	GGATC	2 cut(s)	206, 333
AfaI	GTAC	3 cut(s)	221, 482, 1031
AfiI	CCNNNNNNNGG	3 cut(s)	461, 911, 912
AgsI	TTSAA	5 cut(s)	48, 239, 270, 401, 853
AleI	CACNNNNGTG	1 cut(s)	335
Alw21I	GWGCWC	2 cut(s)	883, 995
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	206, 333
AlwNI	CAGNNNCTG	2 cut(s)	602, 638
AoxI	GGCC	2 cut(s)	302, 833
ApeKI	GCWGC	6 cut(s)	71, 251, 365, 411, 547, 635
ArsI	GACNNNNNNTTYG	2 cut(s)	821, 853
AspS9I	GGNCC	3 cut(s)	302, 795, 834
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	795
BaeGI	GKGCMC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	2 cut(s)	883, 995
BbvI	GCAGC	6 cut(s)	83, 263, 377, 398, 559, 622
BccI	CCATC	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	194, 911
BfmI	CTRYAG	1 cut(s)	56
BisI	GCNGC	6 cut(s)	72, 252, 366, 412, 548, 636
BlsI	GCNGC	6 cut(s)	73, 253, 367, 413, 549, 637
Bme18I	GGWCC	1 cut(s)	795
BmgT120I	GGNCC	3 cut(s)	302, 795, 834
BmiI	GGNNCC	3 cut(s)	89, 448, 796
BmsI	GCATC	2 cut(s)	352, 798
BpiI	GAAGAC	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	2 cut(s)	263, 354
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	215, 542
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	3 cut(s)	461, 911, 912
Bse1I	ACTGG	4 cut(s)	533, 682, 836, 1010
Bse3DI	GCAATG	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	215, 542
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	3 cut(s)	461, 911, 912
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	5 cut(s)	621, 629, 795, 921, 1008
BseNI	ACTGG	4 cut(s)	533, 682, 836, 1010
BseRI	GAGGAG	2 cut(s)	904, 984
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	6 cut(s)	83, 263, 377, 398, 559, 622
BseYI	CCCAGC	1 cut(s)	638
BsgI	GTGCAG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	304, 835
BshNI	GGYRCC	1 cut(s)	87
BsiHKAI	GWGCWC	2 cut(s)	883, 995
BsiSI	CCGG	1 cut(s)	91
BslFI	GGGAC	4 cut(s)	572, 655, 808, 928
BslI	CCNNNNNNNGG	3 cut(s)	461, 911, 912
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	4 cut(s)	572, 655, 808, 928
BsmI	GAATGC	4 cut(s)	37, 43, 151, 974
BsnI	GGCC	2 cut(s)	304, 835
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	3 cut(s)	90, 883, 995
Bsp143I	GATC	4 cut(s)	211, 325, 471, 907
BspANI	GGCC	2 cut(s)	304, 835
BspCNI	CTCAG	5 cut(s)	620, 628, 796, 922, 1007
BspLI	GGNNCC	3 cut(s)	89, 448, 796
BspPI	GGATC	2 cut(s)	206, 333
BspT107I	GGYRCC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	4 cut(s)	533, 682, 836, 1010
BssECI	CCNNGG	2 cut(s)	215, 542
BssMI	GATC	4 cut(s)	211, 325, 471, 907
BssT1I	CCWWGG	1 cut(s)	542
Bst4CI	ACNGT	6 cut(s)	105, 219, 378, 384, 509, 919
BstC8I	GCNNGC	3 cut(s)	451, 683, 780
BstDEI	CTNAG	6 cut(s)	499, 607, 615, 804, 930, 994
BstDSI	CCRYGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	4 cut(s)	214, 328, 474, 910
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	4 cut(s)	211, 325, 471, 907
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 749, 866, 931
BstNSI	RCATGY	1 cut(s)	782
BstSFI	CTRYAG	1 cut(s)	56
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	6 cut(s)	83, 263, 377, 398, 559, 622
BstV2I	GAAGAC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	304, 835
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	101, 1017
Cac8I	GCNNGC	3 cut(s)	451, 683, 780
CaiI	CAGNNNCTG	2 cut(s)	602, 638
Cfr13I	GGNCC	3 cut(s)	302, 795, 834
Csp6I	GTAC	3 cut(s)	220, 481, 1030
CviAII	CATG	5 cut(s)	430, 484, 625, 721, 779
CviQI	GTAC	3 cut(s)	220, 481, 1030
DdeI	CTNAG	6 cut(s)	499, 607, 615, 804, 930, 994
DpnI	GATC	4 cut(s)	213, 327, 473, 909
DpnII	GATC	4 cut(s)	211, 325, 471, 907
Eco130I	CCWWGG	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	795
EcoO109I	RGGNCCY	1 cut(s)	795
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	5 cut(s)	433, 487, 628, 724, 782
FaqI	GGGAC	4 cut(s)	572, 655, 808, 928
FatI	CATG	5 cut(s)	429, 483, 624, 720, 778
Fnu4HI	GCNGC	6 cut(s)	72, 252, 366, 412, 548, 636
FokI	GGATG	1 cut(s)	408
Fsp4HI	GCNGC	6 cut(s)	72, 252, 366, 412, 548, 636
FspBI	CTAG	2 cut(s)	194, 911
GluI	GCNGC	6 cut(s)	72, 252, 366, 412, 548, 636
GsaI	CCCAGC	1 cut(s)	642
HaeIII	GGCC	2 cut(s)	304, 835
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	5 cut(s)	433, 487, 628, 724, 782
HinfI	GANTC	3 cut(s)	235, 605, 763
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	1032
Hpy188I	TCNGA	2 cut(s)	471, 700
Hpy188III	TCNNGA	5 cut(s)	28, 239, 280, 359, 827
Hpy8I	GTNNAC	1 cut(s)	1032
HpyAV	CCTTC	4 cut(s)	195, 284, 808, 847
HpyCH4III	ACNGT	6 cut(s)	105, 219, 378, 384, 509, 919
HpyCH4IV	ACGT	2 cut(s)	355, 1028
HpyCH4V	TGCA	5 cut(s)	35, 101, 149, 365, 414
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 749, 866, 931
HpyF3I	CTNAG	6 cut(s)	499, 607, 615, 804, 930, 994
HpySE526I	ACGT	2 cut(s)	355, 1028
Hsp92II	CATG	5 cut(s)	433, 487, 628, 724, 782
Kzo9I	GATC	4 cut(s)	211, 325, 471, 907
LmnI	GCTCC	3 cut(s)	446, 495, 971
Lsp1109I	GCAGC	6 cut(s)	83, 263, 377, 398, 559, 622
LweI	GCATC	2 cut(s)	352, 798
MaeI	CTAG	2 cut(s)	194, 911
MaeII	ACGT	2 cut(s)	355, 1028
MaeIII	GTNAC	4 cut(s)	378, 524, 610, 1024
MalI	GATC	4 cut(s)	213, 327, 473, 909
MboI	GATC	4 cut(s)	211, 325, 471, 907
MboII	GAAGA	1 cut(s)	515
MhlI	GDGCHC	3 cut(s)	90, 883, 995
MluCI	AATT	2 cut(s)	10, 262
MlyI	GAGTC	2 cut(s)	599, 757
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	8 cut(s)	135, 174, 191, 241, 600, 835, 882, 962
MseI	TTAA	1 cut(s)	936
MslI	CAYNNNNRTG	2 cut(s)	335, 874
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	1 cut(s)	91
Mva1269I	GAATGC	4 cut(s)	37, 43, 151, 974
MwoI	GCNNNNNNNGC	4 cut(s)	347, 749, 866, 931
NdeII	GATC	4 cut(s)	211, 325, 471, 907
NlaIII	CATG	5 cut(s)	433, 487, 628, 724, 782
NlaIV	GGNNCC	3 cut(s)	89, 448, 796
NmuCI	GTSAC	2 cut(s)	378, 610
NspI	RCATGY	1 cut(s)	782
OliI	CACNNNNGTG	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	782
PctI	GAATGC	4 cut(s)	37, 43, 151, 974
PfeI	GAWTC	1 cut(s)	235
PflFI	GACNNNGTC	1 cut(s)	608
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	6 cut(s)	73, 253, 367, 413, 549, 637
PleI	GAGTC	2 cut(s)	599, 757
PpsI	GAGTC	2 cut(s)	599, 757
PpuMI	RGGWCCY	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	795
PspFI	CCCAGC	1 cut(s)	638
PspN4I	GGNNCC	3 cut(s)	89, 448, 796
PspPI	GGNCC	3 cut(s)	302, 795, 834
PspPPI	RGGWCCY	1 cut(s)	795
PstNI	CAGNNNCTG	2 cut(s)	602, 638
PsyI	GACNNNGTC	1 cut(s)	608
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	3 cut(s)	221, 482, 1031
RsaNI	GTAC	3 cut(s)	220, 481, 1030
RseI	CAYNNNNRTG	2 cut(s)	335, 874
SaqAI	TTAA	1 cut(s)	936
SatI	GCNGC	6 cut(s)	72, 252, 366, 412, 548, 636
Sau3AI	GATC	4 cut(s)	211, 325, 471, 907
Sau96I	GGNCC	3 cut(s)	302, 795, 834
SchI	GAGTC	2 cut(s)	599, 757
SduI	GDGCHC	3 cut(s)	90, 883, 995
SfaNI	GCATC	2 cut(s)	352, 798
SfcI	CTRYAG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	795
SmiMI	CAYNNNNRTG	2 cut(s)	335, 874
SmlI	CTYRAG	2 cut(s)	278, 369
SmoI	CTYRAG	2 cut(s)	278, 369
SphI	GCATGC	1 cut(s)	782
Sse9I	AATT	2 cut(s)	10, 262
SspMI	CTAG	2 cut(s)	194, 911
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	6 cut(s)	105, 219, 378, 384, 509, 919
TaiI	ACGT	2 cut(s)	358, 1031
TaqI	TCGA	6 cut(s)	29, 79, 233, 517, 657, 840
TasI	AATT	2 cut(s)	10, 262
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	936
Tru9I	TTAA	1 cut(s)	936
TscAI	CASTG	2 cut(s)	108, 1017
TseFI	GTSAC	2 cut(s)	378, 610
TseI	GCWGC	6 cut(s)	71, 251, 365, 411, 547, 635
Tsp45I	GTSAC	2 cut(s)	378, 610
TspRI	CASTG	2 cut(s)	108, 1017
Tth111I	GACNNNGTC	1 cut(s)	608
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	795
XceI	RCATGY	1 cut(s)	782
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XspI	CTAG	2 cut(s)	194, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.