Rh4AG079600

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018871
Physical Location & Seq
Forward (+)
16644243 .. 16644599
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG079600.1

Sequence Viewer

Length: 357 bp
ATGACATGTGCTGCCGGAACCTTCTGTTATATTGATCCAGAGTATCAGCAAACTGGCATGCTTGGGATAAAATCTGATATATACTCACTTGGGGTCATGTTCCTACAACTAATAACAGCCAAACCACCTATGGGTTTGACTCATCACGTTGAGCGGGCTATTGAGAAAGGGACTTTCTCTGAGATGCTTGACCCTGCCGTTACTGACTGGCCAGTTGAGGAAGCATTGTGTTTTGCAAAGCTAGCTCTGCAGTGTGCTGAGATGAGGCAAAAAGATAGACCGGATCTTGGGAAGGTTGTTCTACCTGAGCTTAACAGATTGAGAAAATTAGGCGAGGATTTCTTCTCTTGGATTTGA

Protein Analysis

118

Amino Acids

13.33

Weight (kDa)

5.1

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 95 7.4e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018871)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05410 FvH4_7g05450
rosa_chinensis RchiOBHm_Chr4g0397661
rosa_samantha Rh2AG371200 Rh2CG359500 Rh2DG382200 Rh4AG079600 Rh4CG085600 Rh4DG072800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 1 cut(s) 154
AclWI GGATC 2 cut(s) 29, 291
AcoI YGGCCR 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 131, 287
AflIII ACRYGT 1 cut(s) 5
AluBI AGCT 3 cut(s) 241, 245, 310
AluI AGCT 3 cut(s) 241, 245, 310
AlwI GGATC 2 cut(s) 29, 291
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 11
AsuNHI GCTAGC 1 cut(s) 241
BalI TGGCCA 1 cut(s) 211
BceAI ACGGC 1 cut(s) 182
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 248
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 174
BmtI GCTAGC 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 287
Bse1I ACTGG 3 cut(s) 58, 212, 212
BseLI CCNNNNNNNGG 2 cut(s) 131, 287
BseMII CTCAG 3 cut(s) 171, 249, 297
BseNI ACTGG 3 cut(s) 58, 212, 212
BshFI GGCC 1 cut(s) 211
BsiSI CCGG 2 cut(s) 15, 281
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 131, 287
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 34, 283
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 3 cut(s) 172, 250, 298
BspLI GGNNCC 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 252
BspOI GCTAGC 1 cut(s) 245
BspPI GGATC 2 cut(s) 29, 291
BsrBI CCGCTC 1 cut(s) 154
BsrI ACTGG 3 cut(s) 58, 212, 212
BssMI GATC 2 cut(s) 34, 283
BstC8I GCNNGC 3 cut(s) 59, 156, 243
BstDEI CTNAG 3 cut(s) 180, 258, 306
BstKTI GATC 2 cut(s) 37, 286
BstMBI GATC 2 cut(s) 34, 283
BstMWI GCNNNNNNNGC 2 cut(s) 242, 247
BstNSI RCATGY 2 cut(s) 9, 61
BstSFI CTRYAG 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 59, 156, 243
CviAII CATG 3 cut(s) 6, 58, 97
CviJI RGCY 6 cut(s) 119, 158, 211, 241, 245, 310
CviKI_1 RGCY 6 cut(s) 119, 158, 211, 241, 245, 310
DdeI CTNAG 3 cut(s) 180, 258, 306
DpnI GATC 2 cut(s) 36, 285
DpnII GATC 2 cut(s) 34, 283
EaeI YGGCCR 1 cut(s) 209
FaeI CATG 3 cut(s) 9, 61, 100
FaiI YATR 7 cut(s) 7, 30, 59, 80, 82, 98, 131
FaqI GGGAC 1 cut(s) 184
FatI CATG 3 cut(s) 5, 57, 96
FauI CCCGC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 211
HapII CCGG 2 cut(s) 15, 281
Hin1II CATG 3 cut(s) 9, 61, 100
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 15, 281
Hpy188I TCNGA 2 cut(s) 76, 181
Hpy188III TCNNGA 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 31, 286
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 236, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 247
HpyF3I CTNAG 3 cut(s) 180, 258, 306
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 9, 61, 100
Kzo9I GATC 2 cut(s) 34, 283
LpnPI CCDG 8 cut(s) 28, 39, 51, 193, 207, 225, 294, 318
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 36, 285
MbiI CCGCTC 1 cut(s) 154
MboI GATC 2 cut(s) 34, 283
MboII GAAGA 1 cut(s) 334
MflI RGATCY 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 1 cut(s) 326
MluNI TGGCCA 1 cut(s) 211
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 3 cut(s) 211, 258, 328
Mox20I TGGCCA 1 cut(s) 211
MscI TGGCCA 1 cut(s) 211
MseI TTAA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 211
MspI CCGG 2 cut(s) 15, 281
MwoI GCNNNNNNNGC 2 cut(s) 242, 247
NdeII GATC 2 cut(s) 34, 283
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 3 cut(s) 9, 61, 100
NlaIV GGNNCC 1 cut(s) 19
NspI RCATGY 2 cut(s) 9, 61
PaeI GCATGC 1 cut(s) 61
PciI ACATGT 1 cut(s) 5
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PscI ACATGT 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 252
PsuI RGATCY 1 cut(s) 283
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 34, 283
SchI GAGTC 1 cut(s) 133
SetI ASST 8 cut(s) 23, 130, 150, 243, 247, 297, 307, 312
SfaNI GCATC 1 cut(s) 174
SfcI CTRYAG 1 cut(s) 248
SphI GCATGC 1 cut(s) 61
Sse9I AATT 1 cut(s) 326
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 242
TaiI ACGT 1 cut(s) 150
TasI AATT 1 cut(s) 326
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 257
TseI GCWGC 1 cut(s) 11
TspRI CASTG 1 cut(s) 257
XceI RCATGY 2 cut(s) 9, 61
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.