U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g05410 FvH4_7g05450 |
| rosa_chinensis | RchiOBHm_Chr4g0397661 |
| rosa_samantha | Rh2AG371200 Rh2CG359500 Rh2DG382200 Rh4AG079600 Rh4CG085600 Rh4DG072800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 52 |
| AciI | CCGC | 1 cut(s) | 52 |
| AclWI | GGATC | 1 cut(s) | 189 |
| AcoI | YGGCCR | 1 cut(s) | 107 |
| AcuI | CTGAAG | 1 cut(s) | 261 |
| AfaI | GTAC | 1 cut(s) | 295 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 35, 185 |
| AgsI | TTSAA | 1 cut(s) | 322 |
| AluBI | AGCT | 3 cut(s) | 139, 143, 281 |
| AluI | AGCT | 3 cut(s) | 139, 143, 281 |
| Alw26I | GTCTC | 1 cut(s) | 74 |
| AlwI | GGATC | 1 cut(s) | 189 |
| AoxI | GGCC | 1 cut(s) | 107 |
| AsuHPI | GGTGA | 2 cut(s) | 242, 278 |
| AsuNHI | GCTAGC | 1 cut(s) | 139 |
| BalI | TGGCCA | 1 cut(s) | 109 |
| BceAI | ACGGC | 1 cut(s) | 80 |
| BcoDI | GTCTC | 1 cut(s) | 74 |
| BfaI | CTAG | 3 cut(s) | 140, 282, 308 |
| BfmI | CTRYAG | 1 cut(s) | 146 |
| BmtI | GCTAGC | 1 cut(s) | 143 |
| BsaWI | WCCGGW | 1 cut(s) | 178 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 35, 185 |
| Bse1I | ACTGG | 2 cut(s) | 110, 110 |
| Bse3DI | GCAATG | 1 cut(s) | 311 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 35, 185 |
| BseMI | GCAATG | 1 cut(s) | 311 |
| BseMII | CTCAG | 2 cut(s) | 69, 195 |
| BseNI | ACTGG | 2 cut(s) | 110, 110 |
| BshFI | GGCC | 1 cut(s) | 109 |
| BsiSI | CCGG | 1 cut(s) | 179 |
| BslFI | GGGAC | 1 cut(s) | 82 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 35, 185 |
| BsmAI | GTCTC | 1 cut(s) | 74 |
| BsmBI | CGTCTC | 1 cut(s) | 74 |
| BsmFI | GGGAC | 1 cut(s) | 82 |
| BsnI | GGCC | 1 cut(s) | 109 |
| Bsp143I | GATC | 1 cut(s) | 181 |
| BspACI | CCGC | 1 cut(s) | 52 |
| BspANI | GGCC | 1 cut(s) | 109 |
| BspCNI | CTCAG | 2 cut(s) | 70, 196 |
| BspOI | GCTAGC | 1 cut(s) | 143 |
| BspPI | GGATC | 1 cut(s) | 189 |
| BsrBI | CCGCTC | 1 cut(s) | 52 |
| BsrDI | GCAATG | 1 cut(s) | 311 |
| BsrI | ACTGG | 2 cut(s) | 110, 110 |
| BssMI | GATC | 1 cut(s) | 181 |
| Bst4CI | ACNGT | 2 cut(s) | 150, 256 |
| BstC8I | GCNNGC | 2 cut(s) | 54, 141 |
| BstDEI | CTNAG | 2 cut(s) | 78, 204 |
| BstKTI | GATC | 1 cut(s) | 184 |
| BstMAI | GTCTC | 1 cut(s) | 74 |
| BstMBI | GATC | 1 cut(s) | 181 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 140, 246, 308 |
| BstSFI | CTRYAG | 1 cut(s) | 146 |
| BstX2I | RGATCY | 1 cut(s) | 181 |
| BstYI | RGATCY | 1 cut(s) | 181 |
| BsuRI | GGCC | 1 cut(s) | 109 |
| BtsIMutI | CAGTG | 1 cut(s) | 155 |
| Cac8I | GCNNGC | 2 cut(s) | 54, 141 |
| CseI | GACGC | 1 cut(s) | 91 |
| Csp6I | GTAC | 1 cut(s) | 294 |
| CviAII | CATG | 1 cut(s) | 241 |
| CviJI | RGCY | 6 cut(s) | 23, 56, 109, 139, 143, 281 |
| CviKI_1 | RGCY | 6 cut(s) | 23, 56, 109, 139, 143, 281 |
| CviQI | GTAC | 1 cut(s) | 294 |
| DdeI | CTNAG | 2 cut(s) | 78, 204 |
| DpnI | GATC | 1 cut(s) | 183 |
| DpnII | GATC | 1 cut(s) | 181 |
| EaeI | YGGCCR | 1 cut(s) | 107 |
| Eco57I | CTGAAG | 1 cut(s) | 261 |
| Esp3I | CGTCTC | 1 cut(s) | 74 |
| FaeI | CATG | 1 cut(s) | 244 |
| FaiI | YATR | 3 cut(s) | 35, 242, 299 |
| FaqI | GGGAC | 1 cut(s) | 82 |
| FatI | CATG | 1 cut(s) | 240 |
| FauI | CCCGC | 1 cut(s) | 45 |
| FspBI | CTAG | 3 cut(s) | 140, 282, 308 |
| HaeIII | GGCC | 1 cut(s) | 109 |
| HapII | CCGG | 1 cut(s) | 179 |
| HgaI | GACGC | 1 cut(s) | 91 |
| Hin1II | CATG | 1 cut(s) | 244 |
| HpaII | CCGG | 1 cut(s) | 179 |
| HphI | GGTGA | 2 cut(s) | 242, 278 |
| Hpy188I | TCNGA | 1 cut(s) | 79 |
| Hpy188III | TCNNGA | 2 cut(s) | 101, 203 |
| HpyCH4III | ACNGT | 2 cut(s) | 150, 256 |
| HpyCH4IV | ACGT | 1 cut(s) | 45 |
| HpyCH4V | TGCA | 2 cut(s) | 134, 316 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 140, 246, 308 |
| HpyF3I | CTNAG | 2 cut(s) | 78, 204 |
| HpySE526I | ACGT | 1 cut(s) | 45 |
| Hsp92II | CATG | 1 cut(s) | 244 |
| Kzo9I | GATC | 1 cut(s) | 181 |
| LpnPI | CCDG | 6 cut(s) | 91, 105, 114, 123, 192, 216 |
| MaeI | CTAG | 3 cut(s) | 140, 282, 308 |
| MaeII | ACGT | 1 cut(s) | 45 |
| MaeIII | GTNAC | 1 cut(s) | 250 |
| MalI | GATC | 1 cut(s) | 183 |
| MbiI | CCGCTC | 1 cut(s) | 52 |
| MboI | GATC | 1 cut(s) | 181 |
| MboII | GAAGA | 3 cut(s) | 191, 202, 267 |
| MflI | RGATCY | 1 cut(s) | 181 |
| MlsI | TGGCCA | 1 cut(s) | 109 |
| MluCI | AATT | 1 cut(s) | 224 |
| MluNI | TGGCCA | 1 cut(s) | 109 |
| MnlI | CCTC | 3 cut(s) | 109, 156, 226 |
| Mox20I | TGGCCA | 1 cut(s) | 109 |
| MscI | TGGCCA | 1 cut(s) | 109 |
| MseI | TTAA | 1 cut(s) | 210 |
| Msp20I | TGGCCA | 1 cut(s) | 109 |
| MspI | CCGG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 140, 246, 308 |
| NdeII | GATC | 1 cut(s) | 181 |
| NheI | GCTAGC | 1 cut(s) | 139 |
| NlaIII | CATG | 1 cut(s) | 244 |
| PsuI | RGATCY | 1 cut(s) | 181 |
| RsaI | GTAC | 1 cut(s) | 295 |
| RsaNI | GTAC | 1 cut(s) | 294 |
| SaqAI | TTAA | 1 cut(s) | 210 |
| Sau3AI | GATC | 1 cut(s) | 181 |
| SetI | ASST | 7 cut(s) | 34, 48, 141, 145, 232, 283, 309 |
| SfcI | CTRYAG | 1 cut(s) | 146 |
| Sse9I | AATT | 1 cut(s) | 224 |
| SsiI | CCGC | 1 cut(s) | 52 |
| SspMI | CTAG | 3 cut(s) | 140, 282, 308 |
| TaaI | ACNGT | 2 cut(s) | 150, 256 |
| TaiI | ACGT | 1 cut(s) | 48 |
| TasI | AATT | 1 cut(s) | 224 |
| Tru1I | TTAA | 1 cut(s) | 210 |
| Tru9I | TTAA | 1 cut(s) | 210 |
| TscAI | CASTG | 1 cut(s) | 155 |
| TspDTI | ATGAA | 1 cut(s) | 257 |
| TspRI | CASTG | 1 cut(s) | 155 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 31 |
| XspI | CTAG | 3 cut(s) | 140, 282, 308 |