Rh2AG371200

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018871
Physical Location & Seq
Reverse (-)
55156041 .. 55156837
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG371200.1

Sequence Viewer

Length: 510 bp
ATGACTGCAACAGCAGGAACATTCTGTTATATCGATCCTGAGTATCAGCAAACAGGCATGCTTGTAACAAAGTCTGATGTCTACTCACTTGGTGTCATTCTTTTACAACTAATAACAGCCAACCCACCAATGGGTCTGACTCTTCAAGTTGAGAAAGCTATTGAGATGGGGAACTTTGCTCAAATTCTTGACCCTGCTGTTCCTGACTGGCCTGTTGAAGAAGCCTTAAAGTTTGCCAAACTAGGTTTACTGTGTGCAGAAATGAGGCGGAAAGACAGACCGGATCTTGGGAAGGTTGTGCTACCGGAGCTCAATAGATTGAGTGAACTTGCCCAAGATAGCATGAATGGTATCATGCGTAGTAGTAGAGGTGCTGGTGGAGTAATCTTACCAAGACAAGGACAACACCCCAGTTTGAAACTACAAGGTGTCTTGAATGACCTACATCCATCGCAATCAAGCCATTCAAGCAGATCATCATATACAGATGGAAGTCATTCACAATTTTAG

Protein Analysis

169

Amino Acids

18.44

Weight (kDa)

6.06

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 73 5.6e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018871)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05410 FvH4_7g05450
rosa_chinensis RchiOBHm_Chr4g0397661
rosa_samantha Rh2AG371200 Rh2CG359500 Rh2DG382200 Rh4AG079600 Rh4CG085600 Rh4DG072800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AciI CCGC 1 cut(s) 268
AclWI GGATC 2 cut(s) 29, 291
AcsI RAATTY 1 cut(s) 183
AdeI CACNNNGTG 1 cut(s) 92
AfiI CCNNNNNNNGG 4 cut(s) 130, 131, 287, 398
AgsI TTSAA 5 cut(s) 146, 218, 418, 436, 468
AluBI AGCT 2 cut(s) 158, 310
AluI AGCT 2 cut(s) 158, 310
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 2 cut(s) 29, 291
AoxI GGCC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 183
Asp700I GAANNNNTTC 1 cut(s) 496
BanII GRGCYC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 312
BccI CCATC 3 cut(s) 160, 457, 482
BfaI CTAG 1 cut(s) 242
BmrI ACTGGG 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 33
BsaWI WCCGGW 2 cut(s) 280, 304
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 131, 287, 398
Bse1I ACTGG 2 cut(s) 212, 411
BseCI ATCGAT 1 cut(s) 33
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 4 cut(s) 130, 131, 287, 398
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 212, 411
BsgI GTGCAG 1 cut(s) 276
BshFI GGCC 1 cut(s) 211
BshVI ATCGAT 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 2 cut(s) 281, 305
BslI CCNNNNNNNGG 4 cut(s) 130, 131, 287, 398
BsnI GGCC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 34, 283, 473
BspACI CCGC 1 cut(s) 268
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 31
BspDI ATCGAT 1 cut(s) 33
BspPI GGATC 2 cut(s) 29, 291
BsrI ACTGG 2 cut(s) 212, 411
BssMI GATC 3 cut(s) 34, 283, 473
Bst4CI ACNGT 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 445
BstKTI GATC 3 cut(s) 37, 286, 476
BstMBI GATC 3 cut(s) 34, 283, 473
BstMWI GCNNNNNNNGC 2 cut(s) 307, 468
BstNSI RCATGY 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 1 cut(s) 211
BsuTUI ATCGAT 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 59
ClaI ATCGAT 1 cut(s) 33
CviAII CATG 3 cut(s) 58, 343, 355
CviJI RGCY 6 cut(s) 119, 158, 211, 224, 310, 462
CviKI_1 RGCY 6 cut(s) 119, 158, 211, 224, 310, 462
DdeI CTNAG 1 cut(s) 39
DpnI GATC 3 cut(s) 36, 285, 475
DpnII GATC 3 cut(s) 34, 283, 473
DraIII CACNNNGTG 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 283
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 312
FaeI CATG 3 cut(s) 61, 346, 358
FaiI YATR 6 cut(s) 30, 59, 344, 356, 481, 483
FatI CATG 3 cut(s) 57, 342, 354
FblI GTMKAC 1 cut(s) 81
FokI GGATG 1 cut(s) 432
FriOI GRGCYC 1 cut(s) 312
FspBI CTAG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 211
HapII CCGG 2 cut(s) 281, 305
Hin1II CATG 3 cut(s) 61, 346, 358
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 281, 305
Hpy166II GTNNAC 3 cut(s) 82, 248, 326
Hpy188I TCNGA 2 cut(s) 76, 138
Hpy188III TCNNGA 4 cut(s) 38, 188, 203, 433
Hpy8I GTNNAC 3 cut(s) 82, 248, 326
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 8, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 468
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 3 cut(s) 61, 346, 358
Kzo9I GATC 3 cut(s) 34, 283, 473
LmnI GCTCC 1 cut(s) 307
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 64
MalI GATC 3 cut(s) 36, 285, 475
MboI GATC 3 cut(s) 34, 283, 473
MboII GAAGA 2 cut(s) 134, 230
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 2 cut(s) 183, 503
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 2 cut(s) 258, 362
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 1 cut(s) 227
MspI CCGG 2 cut(s) 281, 305
MwoI GCNNNNNNNGC 2 cut(s) 307, 468
NdeII GATC 3 cut(s) 34, 283, 473
NlaIII CATG 3 cut(s) 61, 346, 358
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 496
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 312
PsuI RGATCY 1 cut(s) 283
SacI GAGCTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 227
Sau3AI GATC 3 cut(s) 34, 283, 473
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 312
SetI ASST 7 cut(s) 160, 247, 297, 312, 373, 430, 444
SphI GCATGC 1 cut(s) 61
Sse9I AATT 2 cut(s) 183, 503
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 312
TaaI ACNGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 183, 503
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 359
XapI RAATTY 1 cut(s) 183
XceI RCATGY 1 cut(s) 61
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 496
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.