FvH4_7g05450

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018871
Physical Location & Seq
Forward (+)
5752458 .. 5753022
565 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05450.t1

Sequence Viewer

Length: 429 bp
ATGACATCAGCTGCTGGGACATTCTGTTATATCGACCCAGAGTATCAACAAACTGGCTTGCTTGGAACAAAATCTGATATCTACTCACTTGGGGTCATGCTTCTACAAATAATAACAGCGAAACAAGCAATGGGTTTGACTCATCTTGTTGAGCATGCCATTGAGATAGGGACCTTCACTGAGATGCTTGACCCCGCTGTTCCTGACTGGCCCGTCGAGGAAGCCTTGAAGTTTGCCAAGTTAGCATTACAATGTGCTCAAATGAGGAGAAAAGACAGACCCGATCTAGGGACGGTTGTGCTACCTGCGCTTAACAGATTGAGAGAACTTGGCGAAAAGGGTGGAGGAGCATTCTCAATACAGATGTCCTCAGTTTCCACAAAGCCAGAAGTGATGAATCATCCCCAACCCGGAGACGCCAGTTCATGA

Protein Analysis

143

Amino Acids

15.39

Weight (kDa)

5.29

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018871)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05410 FvH4_7g05450
rosa_chinensis RchiOBHm_Chr4g0397661
rosa_samantha Rh2AG371200 Rh2CG359500 Rh2DG382200 Rh4AG079600 Rh4CG085600 Rh4DG072800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 313
AciI CCGC 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 417
AfiI CCNNNNNNNGG 3 cut(s) 287, 288, 410
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 408
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 2 cut(s) 171, 210
AsuC2I CCSGG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 259
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 171, 210
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 417
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 288, 410
Bse1I ACTGG 3 cut(s) 58, 212, 420
Bse3DI GCAATG 1 cut(s) 135
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 3 cut(s) 287, 288, 410
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 171, 384
BseNI ACTGG 3 cut(s) 58, 212, 420
BseRI GAGGAG 2 cut(s) 280, 360
BseYI CCCAGC 1 cut(s) 14
BshFI GGCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 3 cut(s) 31, 184, 304
BslI CCNNNNNNNGG 3 cut(s) 287, 288, 410
BsmAI GTCTC 1 cut(s) 408
BsmBI CGTCTC 1 cut(s) 408
BsmFI GGGAC 3 cut(s) 31, 184, 304
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 2 cut(s) 172, 383
BspHI TCATGA 1 cut(s) 425
BspLI GGNNCC 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 3 cut(s) 58, 212, 420
BssMI GATC 1 cut(s) 283
BssNI GRCGYC 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 295
BstACI GRCGYC 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 59, 156
BstDEI CTNAG 2 cut(s) 180, 370
BstF5I GGATG 1 cut(s) 400
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 3 cut(s) 125, 242, 307
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 409
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 59, 156
CaiI CAGNNNCTG 1 cut(s) 14
CciI TCATGA 1 cut(s) 425
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 171, 210
CviAII CATG 3 cut(s) 97, 155, 426
CviJI RGCY 5 cut(s) 11, 57, 211, 224, 385
CviKI_1 RGCY 5 cut(s) 11, 57, 211, 224, 385
DdeI CTNAG 2 cut(s) 180, 370
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 171
EcoRV GATATC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 3 cut(s) 100, 158, 429
FaiI YATR 4 cut(s) 30, 98, 156, 427
FaqI GGGAC 3 cut(s) 31, 184, 304
FatI CATG 3 cut(s) 96, 154, 425
FauI CCCGC 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 309
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 1 cut(s) 211
HapII CCGG 1 cut(s) 411
HhaI GCGC 1 cut(s) 310
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 3 cut(s) 100, 158, 429
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 2 cut(s) 139, 397
HpaII CCGG 1 cut(s) 411
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 203, 426
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 242, 307
HpyF3I CTNAG 2 cut(s) 180, 370
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 3 cut(s) 100, 158, 429
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 7 cut(s) 39, 51, 193, 216, 318, 399, 424
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 287
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 259
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 4 cut(s) 211, 258, 338, 379
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 182, 250
MspA1I CMGCKG 2 cut(s) 11, 197
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 125, 242, 307
NciI CCSGG 1 cut(s) 411
NdeII GATC 1 cut(s) 283
NlaIII CATG 3 cut(s) 100, 158, 429
NlaIV GGNNCC 1 cut(s) 172
NspI RCATGY 1 cut(s) 158
PaeI GCATGC 1 cut(s) 158
PagI TCATGA 1 cut(s) 425
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 2 cut(s) 171, 210
PspPPI RGGWCCY 1 cut(s) 171
PstNI CAGNNNCTG 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 11
RseI CAYNNNNRTG 2 cut(s) 182, 250
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 171, 210
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 1 cut(s) 259
SetI ASST 3 cut(s) 13, 176, 307
SfaNI GCATC 1 cut(s) 174
SinI GGWCC 1 cut(s) 171
SmiMI CAYNNNNRTG 2 cut(s) 182, 250
SphI GCATGC 1 cut(s) 158
SsiI CCGC 1 cut(s) 195
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 33, 216
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 410, 414
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 171
XceI RCATGY 1 cut(s) 158
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.