U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g05410 FvH4_7g05450 |
| rosa_chinensis | RchiOBHm_Chr4g0397661 |
| rosa_samantha | Rh2AG371200 Rh2CG359500 Rh2DG382200 Rh4AG079600 Rh4CG085600 Rh4DG072800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 251 |
| AccI | GTMKAC | 1 cut(s) | 241 |
| AciI | CCGC | 1 cut(s) | 180 |
| AclWI | GGATC | 1 cut(s) | 2 |
| AcoI | YGGCCR | 1 cut(s) | 26 |
| AcsI | RAATTY | 1 cut(s) | 214 |
| AfaI | GTAC | 2 cut(s) | 192, 277 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 104, 105, 251 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AluBI | AGCT | 3 cut(s) | 127, 159, 264 |
| AluI | AGCT | 3 cut(s) | 127, 159, 264 |
| Alw21I | GWGCWC | 1 cut(s) | 287 |
| AlwI | GGATC | 1 cut(s) | 2 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 20 |
| AoxI | GGCC | 1 cut(s) | 26 |
| ApoI | RAATTY | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 1 cut(s) | 189 |
| BalI | TGGCCA | 1 cut(s) | 28 |
| BanII | GRGCYC | 1 cut(s) | 145 |
| Bbv12I | GWGCWC | 1 cut(s) | 287 |
| BfmI | CTRYAG | 1 cut(s) | 12 |
| BmcAI | AGTACT | 1 cut(s) | 192 |
| Bpu10I | CCTNAGC | 1 cut(s) | 123 |
| BpuEI | CTTGAG | 1 cut(s) | 286 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 104, 105, 251 |
| Bse1I | ACTGG | 1 cut(s) | 29 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 104, 105, 251 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 1 cut(s) | 29 |
| BseRI | GAGGAG | 1 cut(s) | 283 |
| BshFI | GGCC | 1 cut(s) | 28 |
| BsiHKAI | GWGCWC | 1 cut(s) | 287 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 104, 105, 251 |
| BsnI | GGCC | 1 cut(s) | 28 |
| Bsp1286I | GDGCHC | 2 cut(s) | 145, 287 |
| Bsp143I | GATC | 2 cut(s) | 7, 100 |
| BspACI | CCGC | 1 cut(s) | 180 |
| BspANI | GGCC | 1 cut(s) | 28 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspMAI | CTGCAG | 1 cut(s) | 16 |
| BspPI | GGATC | 1 cut(s) | 2 |
| BsrI | ACTGG | 1 cut(s) | 29 |
| BssMI | GATC | 2 cut(s) | 7, 100 |
| Bst4CI | ACNGT | 1 cut(s) | 69 |
| BstDEI | CTNAG | 1 cut(s) | 123 |
| BstKTI | GATC | 2 cut(s) | 10, 103 |
| BstMBI | GATC | 2 cut(s) | 7, 100 |
| BstSFI | CTRYAG | 1 cut(s) | 12 |
| BsuRI | GGCC | 1 cut(s) | 28 |
| BtsIMutI | CAGTG | 1 cut(s) | 74 |
| CaiI | CAGNNNCTG | 1 cut(s) | 20 |
| Csp6I | GTAC | 2 cut(s) | 191, 276 |
| CviJI | RGCY | 6 cut(s) | 28, 41, 127, 143, 159, 264 |
| CviKI_1 | RGCY | 6 cut(s) | 28, 41, 127, 143, 159, 264 |
| CviQI | GTAC | 2 cut(s) | 191, 276 |
| DdeI | CTNAG | 1 cut(s) | 123 |
| DpnI | GATC | 2 cut(s) | 9, 102 |
| DpnII | GATC | 2 cut(s) | 7, 100 |
| EaeI | YGGCCR | 1 cut(s) | 26 |
| EciI | GGCGGA | 1 cut(s) | 195 |
| Eco24I | GRGCYC | 1 cut(s) | 145 |
| EcoT38I | GRGCYC | 1 cut(s) | 145 |
| FaiI | YATR | 4 cut(s) | 116, 173, 236, 258 |
| FblI | GTMKAC | 1 cut(s) | 241 |
| FriOI | GRGCYC | 1 cut(s) | 145 |
| HaeIII | GGCC | 1 cut(s) | 28 |
| HincII | GTYRAC | 1 cut(s) | 242 |
| HindII | GTYRAC | 1 cut(s) | 242 |
| HinfI | GANTC | 2 cut(s) | 209, 271 |
| HphI | GGTGA | 1 cut(s) | 189 |
| Hpy166II | GTNNAC | 1 cut(s) | 242 |
| Hpy188III | TCNNGA | 3 cut(s) | 20, 206, 252 |
| Hpy8I | GTNNAC | 1 cut(s) | 242 |
| Hpy99I | CGWCG | 1 cut(s) | 155 |
| HpyAV | CCTTC | 1 cut(s) | 103 |
| HpyCH4III | ACNGT | 1 cut(s) | 69 |
| HpyCH4V | TGCA | 1 cut(s) | 14 |
| HpyF3I | CTNAG | 1 cut(s) | 123 |
| Kzo9I | GATC | 2 cut(s) | 7, 100 |
| LpnPI | CCDG | 5 cut(s) | 24, 33, 42, 135, 237 |
| MalI | GATC | 2 cut(s) | 9, 102 |
| MboI | GATC | 2 cut(s) | 7, 100 |
| MhlI | GDGCHC | 2 cut(s) | 145, 287 |
| MlsI | TGGCCA | 1 cut(s) | 28 |
| MluCI | AATT | 1 cut(s) | 214 |
| MluNI | TGGCCA | 1 cut(s) | 28 |
| MlyI | GAGTC | 2 cut(s) | 203, 280 |
| MnlI | CCTC | 3 cut(s) | 28, 155, 261 |
| Mox20I | TGGCCA | 1 cut(s) | 28 |
| MscI | TGGCCA | 1 cut(s) | 28 |
| MseI | TTAA | 2 cut(s) | 129, 301 |
| Msp20I | TGGCCA | 1 cut(s) | 28 |
| NdeII | GATC | 2 cut(s) | 7, 100 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 251 |
| PleI | GAGTC | 2 cut(s) | 203, 279 |
| PpsI | GAGTC | 2 cut(s) | 203, 279 |
| PstI | CTGCAG | 1 cut(s) | 16 |
| PstNI | CAGNNNCTG | 1 cut(s) | 20 |
| RsaI | GTAC | 2 cut(s) | 192, 277 |
| RsaNI | GTAC | 2 cut(s) | 191, 276 |
| SalI | GTCGAC | 1 cut(s) | 240 |
| SaqAI | TTAA | 2 cut(s) | 129, 301 |
| Sau3AI | GATC | 2 cut(s) | 7, 100 |
| ScaI | AGTACT | 1 cut(s) | 192 |
| SchI | GAGTC | 2 cut(s) | 203, 280 |
| SduI | GDGCHC | 2 cut(s) | 145, 287 |
| SetI | ASST | 4 cut(s) | 114, 129, 161, 266 |
| SfcI | CTRYAG | 1 cut(s) | 12 |
| SmlI | CTYRAG | 1 cut(s) | 265 |
| SmoI | CTYRAG | 1 cut(s) | 265 |
| Sse9I | AATT | 1 cut(s) | 214 |
| SsiI | CCGC | 1 cut(s) | 180 |
| TaaI | ACNGT | 1 cut(s) | 69 |
| TaqI | TCGA | 2 cut(s) | 241, 281 |
| TaqII | GACCGA | 1 cut(s) | 108 |
| TasI | AATT | 1 cut(s) | 214 |
| TatI | WGTACW | 1 cut(s) | 190 |
| Tru1I | TTAA | 2 cut(s) | 129, 301 |
| Tru9I | TTAA | 2 cut(s) | 129, 301 |
| TscAI | CASTG | 1 cut(s) | 74 |
| TspRI | CASTG | 1 cut(s) | 74 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 251 |
| XapI | RAATTY | 1 cut(s) | 214 |
| XmiI | GTMKAC | 1 cut(s) | 241 |
| ZrmI | AGTACT | 1 cut(s) | 192 |