FvH4_7g06460

DELLA protein GAI1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016384
Physical Location & Seq
Reverse (-)
6501476 .. 6502801
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06460.t1

Sequence Viewer

Length: 1326 bp
ATGAGTTCTGTGTCTAGATTATCAACTGTAGAAGTAATGAAAGTAGCACGAGCAAGGTTCATCCAATTCTCTTCCCAAAAGTACGCCGATGACTCCATACCTAATCATGTTTTAGGCTGTGCTCCCCTAGGTCTCTCGGACCAGGACGCCAAAGAGGTTGAGCTTGCACACCTTCTTTTAGCTTTTGCAGACAAGGTTGGAAAGCAACAATATGATCAGGCAAGAAAACTGCAGAATCTATGCCATTTCCTATCTTCCAACACTGGAAATACTGTTCAGAAAGTTGTTTATTATTTTTCAAAAGCTCTTCAAGAGAGGACAGATAGGGAAACTGGGAGAATCACATATAAGAGCTCAGAAAGTAAGGATCTACTTGCAATGCATTTAGAAAAGACAATGGCTTGTTGTCCTGCTTTCTTTGCTTGTTTCCTAGAACTTCCCTTCTACCAAGTAACTCAGTTTGCTGGGATCCAAGCAATTGTTGAAAGTGTAGCATCAGCCAAAAGAGTTCATTTCATTGACCTTGAGATCAGAAGTGGGGGGCACTGCACAGTATTGATGCAAGCTCTTGCGTCAAGATATGAGCAACCAATAGAGATGCTCAAAGTTACTGCAGTGGGAAATGGAACTTCATCAAGACAAAAGCTTGAGGACACTGGCAAAAGGTTGGCTCAGTTTGCTGAGGCATTACACTTGCCCTTTACCTTCAAAATAGCAATGGTGACAAACATTAACGATATCAATGAAGATGCCTTCGAGTCTGAGGATGGTGAAGCAACTGCAGTCTACTGTTCTTTAATGCGAAGCAGCATGATAAGTCTACCGGATTGCTTGGAAACTGCAATAACAGCGCTCAGAAAGCTCAATCCATGTCTGATGGTGATCACAGAAACCGAAGCGAATCTCTATTCACCAGTTTTCGAAGACCGTTTCAATGAAGCACTCTTCTACTATGGTGCTTATTATGATTGCCTTGATGTCTGTATGGATAGTTGCAGTCCATACAGGAGGGAATTAGAAGAGACATTTTTGGCACAACAGATCAAAAATATTATCGCGAGTGAAGAAGAGAGGATATTCAGGCACATGAGGATTGATGTTTGGAGGAGTTTGTTTGCAAAGTTTGGAATGGTGGAAGTGGAGCTTAGCTTGTCATCGTTGTACCAAGCAGACCTTACTGCTAAGCAATTTGCATGCGGGAAATCATGCACATTGAATATGAATGGGAAATGCCTAACCGTTGGATGGAAAGGAACACCAATTCTCTCTCTTTCTGCTTGGAAATTCCATGCAGTCAATACCAAGACTTCTAAATATCTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

442

Amino Acids

49.66

Weight (kDa)

6.19

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 56 - 428 5.1e-75 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06460
malus_domestica MD13G1155900.v1.1
prunus_persica Prupe.1G119200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0334751
rosa_laevigata RLG00000029425
rosa_multiflora Rmu_sc0000574.1_g000025 Rmu_sc0006031.1_g000013 Rmu_sc0015370.1_g000002
rosa_roxburghii Rroxscaffold_4G00316620
rosa_rugosa Rorug01G0115600
rosa_samantha Rh1AG140600 Rh1BG107700 Rh1CG132500 Rh1DG144600
rosa_wichuraiana Rw1G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 786, 820
AccII CGCG 1 cut(s) 1058
AciI CCGC 1 cut(s) 1197
AclWI GGATC 3 cut(s) 375, 463, 476
AcsI RAATTY 1 cut(s) 1283
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 2 cut(s) 83, 1163
AfeI AGCGCT 1 cut(s) 852
AfiI CCNNNNNNNGG 1 cut(s) 1245
AgsI TTSAA 6 cut(s) 300, 311, 485, 709, 934, 1216
AjnI CCWGG 1 cut(s) 141
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 9 cut(s) 163, 182, 305, 354, 566, 646, 862, 1144, 1149
AluI AGCT 9 cut(s) 163, 182, 305, 354, 566, 646, 862, 1144, 1149
Alw21I GWGCWC 2 cut(s) 124, 356
Alw26I GTCTC 2 cut(s) 137, 1016
AlwI GGATC 3 cut(s) 375, 463, 476
Aor51HI AGCGCT 1 cut(s) 852
ApeKI GCWGC 1 cut(s) 807
ApoI RAATTY 1 cut(s) 1283
AspA2I CCTAGG 1 cut(s) 127
AspLEI GCGC 1 cut(s) 853
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 4 cut(s) 733, 782, 892, 903
AsuII TTCGAA 1 cut(s) 921
AvaII GGWCC 1 cut(s) 139
AvrII CCTAGG 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 546
BamHI GGATCC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 356
BauI CACGAG 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 930
Bbv12I GWGCWC 2 cut(s) 124, 356
BbvCI CCTCAGC 1 cut(s) 681
BbvI GCAGC 1 cut(s) 819
BccI CCATC 3 cut(s) 761, 871, 1239
BciT130I CCWGG 1 cut(s) 143
BclI TGATCA 2 cut(s) 214, 882
BcoDI GTCTC 2 cut(s) 137, 1016
BfaI CTAG 3 cut(s) 15, 128, 431
BfmI CTRYAG 4 cut(s) 27, 230, 612, 780
BfoI RGCGCY 1 cut(s) 854
BisI GCNGC 1 cut(s) 808
BlnI CCTAGG 1 cut(s) 127
BlpI GCTNAGC 2 cut(s) 1145, 1182
BlsI GCNGC 1 cut(s) 809
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 470
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 4 cut(s) 503, 549, 588, 739
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 930
Bpu10I CCTNAGC 1 cut(s) 681
Bpu1102I GCTNAGC 2 cut(s) 1145, 1182
Bpu14I TTCGAA 1 cut(s) 921
BpuEI CTTGAG 2 cut(s) 545, 668
BsaBI GATNNNNATC 1 cut(s) 881
BsaHI GRCGYC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 823
Bsc4I CCNNNNNNNGG 1 cut(s) 1245
Bse1I ACTGG 4 cut(s) 268, 337, 661, 914
Bse3DI GCAATG 2 cut(s) 384, 723
Bse8I GATNNNNATC 1 cut(s) 881
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 3 cut(s) 60, 772, 1250
BseJI GATNNNNATC 1 cut(s) 881
BseLI CCNNNNNNNGG 1 cut(s) 1245
BseMI GCAATG 2 cut(s) 384, 723
BseMII CTCAG 6 cut(s) 369, 470, 672, 686, 753, 868
BseNI ACTGG 4 cut(s) 268, 337, 661, 914
BseRI GAGGAG 1 cut(s) 1120
BseSI GKGCMC 1 cut(s) 546
BseXI GCAGC 1 cut(s) 819
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 532
Bsh1236I CGCG 1 cut(s) 1058
BsiHKAI GWGCWC 2 cut(s) 124, 356
BsiSI CCGG 1 cut(s) 824
BslI CCNNNNNNNGG 1 cut(s) 1245
BsmAI GTCTC 2 cut(s) 137, 1016
Bso31I GGTCTC 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 921
Bsp1286I GDGCHC 3 cut(s) 124, 356, 546
Bsp143I GATC 6 cut(s) 214, 367, 468, 528, 882, 1041
Bsp1720I GCTNAGC 2 cut(s) 1145, 1182
Bsp68I TCGCGA 1 cut(s) 1058
BspACI CCGC 1 cut(s) 1197
BspCNI CTCAG 6 cut(s) 368, 469, 673, 685, 754, 867
BspFNI CGCG 1 cut(s) 1058
BspLI GGNNCC 1 cut(s) 470
BspMAI CTGCAG 3 cut(s) 234, 616, 784
BspPI GGATC 3 cut(s) 375, 463, 476
BspQI GCTCTTC 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 921
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 2 cut(s) 384, 723
BsrI ACTGG 4 cut(s) 268, 337, 661, 914
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 6 cut(s) 214, 367, 468, 528, 882, 1041
BssNI GRCGYC 1 cut(s) 147
BssSI CACGAG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 127
Bst2BI CACGAG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 6 cut(s) 28, 274, 553, 791, 929, 1240
Bst6I CTCTTC 5 cut(s) 76, 312, 950, 1014, 1062
BstACI GRCGYC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 921
BstC8I GCNNGC 3 cut(s) 165, 564, 1195
BstDEI CTNAG 8 cut(s) 355, 456, 672, 681, 762, 854, 1145, 1182
BstF5I GGATG 3 cut(s) 60, 772, 1250
BstFNI CGCG 1 cut(s) 1058
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 6 cut(s) 217, 370, 471, 531, 885, 1044
BstMAI GTCTC 2 cut(s) 137, 1016
BstMBI GATC 6 cut(s) 214, 367, 468, 528, 882, 1041
BstMWI GCNNNNNNNGC 4 cut(s) 419, 677, 848, 859
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 1197
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 4 cut(s) 27, 230, 612, 780
BstSLI GKGCMC 1 cut(s) 546
BstUI CGCG 1 cut(s) 1058
BstV1I GCAGC 1 cut(s) 819
BstV2I GAAGAC 1 cut(s) 930
BstX2I RGATCY 2 cut(s) 367, 468
BstYI RGATCY 2 cut(s) 367, 468
BtsCI GGATG 3 cut(s) 60, 772, 1250
BtsI GCAGTG 2 cut(s) 544, 621
BtsIMutI CAGTG 4 cut(s) 261, 544, 621, 654
BtuMI TCGCGA 1 cut(s) 1058
Cac8I GCNNGC 3 cut(s) 165, 564, 1195
CfoI GCGC 1 cut(s) 853
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 2 cut(s) 155, 561
Csp6I GTAC 2 cut(s) 82, 1162
CviAII CATG 8 cut(s) 107, 811, 870, 1087, 1194, 1206, 1289, 1321
CviQI GTAC 2 cut(s) 82, 1162
DdeI CTNAG 8 cut(s) 355, 456, 672, 681, 762, 854, 1145, 1182
DpnI GATC 6 cut(s) 216, 369, 470, 530, 884, 1043
DpnII GATC 6 cut(s) 214, 367, 468, 528, 882, 1041
Eam1104I CTCTTC 5 cut(s) 76, 312, 950, 1014, 1062
EarI CTCTTC 5 cut(s) 76, 312, 950, 1014, 1062
Ecl136II GAGCTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 739
Eco47I GGWCC 1 cut(s) 139
Eco47III AGCGCT 1 cut(s) 852
Eco53kI GAGCTC 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 141
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 8 cut(s) 110, 814, 873, 1090, 1197, 1209, 1292, 1324
FalI AAGNNNNNCTT 4 cut(s) 1128, 1160, 1158, 1190
FatI CATG 8 cut(s) 106, 810, 869, 1086, 1193, 1205, 1288, 1320
FauI CCCGC 1 cut(s) 1190
FbaI TGATCA 2 cut(s) 214, 882
FblI GTMKAC 2 cut(s) 786, 820
Fnu4HI GCNGC 1 cut(s) 808
FokI GGATG 3 cut(s) 47, 779, 1257
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 808
FspBI CTAG 3 cut(s) 15, 128, 431
GlaI GCGC 1 cut(s) 852
GluI GCNGC 1 cut(s) 808
GsaI CCCAGC 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 854
HapII CCGG 1 cut(s) 824
HgaI GACGC 2 cut(s) 155, 561
HhaI GCGC 1 cut(s) 853
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 8 cut(s) 110, 814, 873, 1090, 1197, 1209, 1292, 1324
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 5 cut(s) 92, 235, 339, 758, 901
HpaII CCGG 1 cut(s) 824
HphI GGTGA 4 cut(s) 733, 782, 892, 903
Hpy166II GTNNAC 2 cut(s) 787, 821
Hpy188I TCNGA 7 cut(s) 139, 279, 358, 533, 763, 857, 876
Hpy188III TCNNGA 5 cut(s) 15, 311, 576, 636, 1057
Hpy8I GTNNAC 2 cut(s) 787, 821
HpyAV CCTTC 4 cut(s) 182, 451, 715, 763
HpyCH4III ACNGT 6 cut(s) 28, 274, 553, 791, 929, 1240
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 677, 848, 859
HpyF3I CTNAG 8 cut(s) 355, 456, 672, 681, 762, 854, 1145, 1182
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 8 cut(s) 110, 814, 873, 1090, 1197, 1209, 1292, 1324
HspAI GCGC 1 cut(s) 851
Ksp22I TGATCA 2 cut(s) 214, 882
Kzo9I GATC 6 cut(s) 214, 367, 468, 528, 882, 1041
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 127, 1141
Lsp1109I GCAGC 1 cut(s) 819
LweI GCATC 4 cut(s) 503, 549, 588, 739
MaeI CTAG 3 cut(s) 15, 128, 431
MaeIII GTNAC 3 cut(s) 451, 607, 721
MalI GATC 6 cut(s) 216, 369, 470, 530, 884, 1043
MboI GATC 6 cut(s) 214, 367, 468, 528, 882, 1041
MboII GAAGA 9 cut(s) 63, 246, 299, 758, 935, 937, 1031, 1076, 1079
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 2 cut(s) 367, 468
MhlI GDGCHC 3 cut(s) 124, 356, 546
MluCI AATT 6 cut(s) 65, 477, 1013, 1187, 1260, 1283
MlyI GAGTC 2 cut(s) 86, 767
MmeI TCCRAC 3 cut(s) 178, 282, 1222
MnlI CCTC 9 cut(s) 148, 309, 643, 676, 757, 1002, 1065, 1083, 1098
Mph1103I ATGCAT 1 cut(s) 384
MseI TTAA 2 cut(s) 732, 797
MspI CCGG 1 cut(s) 824
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 1058
MwoI GCNNNNNNNGC 4 cut(s) 419, 677, 848, 859
NdeII GATC 6 cut(s) 214, 367, 468, 528, 882, 1041
NlaIII CATG 8 cut(s) 110, 814, 873, 1090, 1197, 1209, 1292, 1324
NlaIV GGNNCC 1 cut(s) 470
NmuCI GTSAC 1 cut(s) 721
NruI TCGCGA 1 cut(s) 1058
NsiI ATGCAT 1 cut(s) 384
NspI RCATGY 1 cut(s) 1197
NspV TTCGAA 1 cut(s) 921
PaeI GCATGC 1 cut(s) 1197
PciSI GCTCTTC 1 cut(s) 312
PfeI GAWTC 3 cut(s) 235, 339, 901
PkrI GCNGC 1 cut(s) 809
PleI GAGTC 2 cut(s) 86, 766
PpsI GAGTC 2 cut(s) 86, 766
Psp124BI GAGCTC 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 470
PspPI GGNCC 1 cut(s) 139
PstI CTGCAG 3 cut(s) 234, 616, 784
PsuI RGATCY 2 cut(s) 367, 468
RruI TCGCGA 1 cut(s) 1058
RsaI GTAC 2 cut(s) 83, 1163
RsaNI GTAC 2 cut(s) 82, 1162
SacI GAGCTC 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 732, 797
SatI GCNGC 1 cut(s) 808
Sau3AI GATC 6 cut(s) 214, 367, 468, 528, 882, 1041
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 2 cut(s) 86, 767
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 3 cut(s) 124, 356, 546
SfaNI GCATC 4 cut(s) 503, 549, 588, 739
SfcI CTRYAG 4 cut(s) 27, 230, 612, 780
SfuI TTCGAA 1 cut(s) 921
SinI GGWCC 1 cut(s) 139
SmlI CTYRAG 2 cut(s) 524, 647
SmoI CTYRAG 2 cut(s) 524, 647
SphI GCATGC 1 cut(s) 1197
Sse9I AATT 6 cut(s) 65, 477, 1013, 1187, 1260, 1283
SsiI CCGC 1 cut(s) 1197
SspI AATATT 1 cut(s) 1051
SspMI CTAG 3 cut(s) 15, 128, 431
SstI GAGCTC 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 6 cut(s) 28, 274, 553, 791, 929, 1240
TaqI TCGA 2 cut(s) 756, 921
TasI AATT 6 cut(s) 65, 477, 1013, 1187, 1260, 1283
TfiI GAWTC 3 cut(s) 235, 339, 901
Tru1I TTAA 2 cut(s) 732, 797
Tru9I TTAA 2 cut(s) 732, 797
TscAI CASTG 4 cut(s) 268, 551, 621, 661
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 1 cut(s) 807
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 8 cut(s) 49, 53, 500, 505, 621, 759, 951, 1235
TspRI CASTG 4 cut(s) 268, 551, 621, 661
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 1283
XbaI TCTAGA 1 cut(s) 14
XceI RCATGY 1 cut(s) 1197
XmaJI CCTAGG 1 cut(s) 127
XmiI GTMKAC 2 cut(s) 786, 820
XspI CTAG 3 cut(s) 15, 128, 431
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.