Prupe.1G119200_v2.0.a1

DELLA protein GAI1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016384
Physical Location & Seq
Forward (+)
9326642 .. 9327967
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G119200.1

Sequence Viewer

Length: 1326 bp
ATGAGTTGTGTACCTGGCTTGTCAACTGTTGAAGTAATGAGAGTAGCAAGAGCAAGCTTCATCCACTTCTCTTCCCGGAGATACGCTGATGACTGCATGCCTGCTCGTGTTTTAGGCAGTGCTCCGCTTGGCCTCTCAGACCAGGAAACCAAAGATGTTGAGCTGGCACACCTTCTTTTAGCTTTTGCTGAAAAGGTTGCAAAGCAGCAATATGGTTGTGCAAGAAAACTACAGAACCTATGCCATTTCCTATCTTCCAGCTGTGGAAATTCAGTTCAAAGAGTTGTTTACTATTTTGCCAAAGCTCTTCAGGAGAAGACTGATAGAGAAACTGGCAGAAACACATCTGAGGGCTCAGAAAGCAGAGATGTACTTGCAATGCATTTCCAAGAAGCAATGGCGAGTTCGACTCCTGCTTTAATGGCATGCTTCCTAGAAGTTCCCTTTTATCAAATAACTGAGTTTGCAGGGATACAAGCAATTGTTGAAAGTGTAGCATCAGCCAAAAAGATTCACTTCATTGACCTTGCAATCAGAACTGGGGGGCACTGCATAGTGTTGATGCAAGCTCTTGCAACTCGATACGAATGCCCGATCGAGCTGCTAAAAGTTACTGCTGTTGGAGTGACATCAAGAGAAAAGATGGAGGACACTGGCAGAAGGTTGGCACAGTTTGCCGAGGCATTGAAATTACCATTTTCCTTCAAAGTAGCCATGGTGAAAGATATCAAAGATGTCAATGAAGACACCTTTGAGTTAGAGGATGGCGAAACAGCTGCAGTTTACTGCCCTCTACTGCTATGCAGCACAATGAGACAACCCAGTTGCTCAGAATCTCTAATAAAAGTACTCAGAAACCTCAACCCCCATCTGATGGTGATCACCGAAATCGAAGCAAATCACAACTCACCAACTTTCACAAACCGTTTCAATGAAGCACTCTTGTACTATAGTGCTTATTTTGAGTGCCTTGATGTCTGCATGGACAGAGGCAGCGCCTACAGGATGGAATTGGAGGAAACATATTTGAGCCTTGAGATAAAAAATATCATTGCTAGCGAAGGCAAAGAGAGGATAATCCGGCGCATGAAAATCGATGCCTGGAGGACTTTGTTTGCAAAAAGTGGAATGGTGGAAGCAGAGCTCAGCTTGTCATCCTTGTACCAAGCAGACCTCGTGGCTAAACAGTTTGCTTGTGGGAGTTGTTGCACATTGGATGCTAATGGGAAAGGCCTTATTGTTGGATGGAAAGGAACACCAATTCTCTCTCTTTCTGTTTGGAAGTTCCATGCAGTCAATGCTAAGACTGCTAAATATCTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

442

Amino Acids

49.13

Weight (kDa)

6.53

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06460
malus_domestica MD13G1155900.v1.1
prunus_persica Prupe.1G119200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0334751
rosa_laevigata RLG00000029425
rosa_multiflora Rmu_sc0000574.1_g000025 Rmu_sc0006031.1_g000013 Rmu_sc0015370.1_g000002
rosa_roxburghii Rroxscaffold_4G00316620
rosa_rugosa Rorug01G0115600
rosa_samantha Rh1AG140600 Rh1BG107700 Rh1CG132500 Rh1DG144600
rosa_wichuraiana Rw1G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 874
AciI CCGC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 293
AfaI GTAC 5 cut(s) 12, 372, 849, 947, 1163
AfiI CCNNNNNNNGG 1 cut(s) 874
AgsI TTSAA 6 cut(s) 32, 278, 488, 688, 706, 931
AjnI CCWGG 3 cut(s) 13, 141, 1100
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
Alw21I GWGCWC 2 cut(s) 124, 1146
Alw26I GTCTC 1 cut(s) 808
AoxI GGCC 2 cut(s) 130, 1231
ApeKI GCWGC 5 cut(s) 205, 601, 776, 804, 993
ApoI RAATTY 1 cut(s) 268
AspLEI GCGC 2 cut(s) 998, 1086
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 4 cut(s) 730, 874, 889, 900
AsuNHI GCTAGC 1 cut(s) 1055
BaeGI GKGCMC 1 cut(s) 549
BanII GRGCYC 2 cut(s) 356, 1146
BauI CACGAG 2 cut(s) 105, 1175
BbsI GAAGAC 2 cut(s) 323, 750
Bbv12I GWGCWC 2 cut(s) 124, 1146
BbvI GCAGC 5 cut(s) 217, 588, 763, 816, 1005
BccI CCATC 6 cut(s) 637, 758, 868, 876, 1000, 1239
BcgI CGANNNNNNTGC 8 cut(s) 570, 583, 604, 617, 758, 792, 1075, 1109
BciT130I CCWGG 3 cut(s) 15, 143, 1102
BciVI GTATCC 1 cut(s) 465
BclI TGATCA 1 cut(s) 879
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 808
BfaI CTAG 2 cut(s) 434, 1056
BfmI CTRYAG 4 cut(s) 230, 777, 949, 1000
BfoI RGCGCY 1 cut(s) 999
BfuI GTATCC 1 cut(s) 465
BisI GCNGC 5 cut(s) 206, 602, 777, 805, 994
BlpI GCTNAGC 1 cut(s) 1145
BlsI GCNGC 5 cut(s) 207, 603, 778, 806, 995
BmcAI AGTACT 1 cut(s) 849
Bme1390I CCNGG 4 cut(s) 15, 76, 143, 1102
BmrFI CCNGG 4 cut(s) 15, 76, 143, 1102
BmrI ACTGGG 2 cut(s) 549, 816
BmsI GCATC 4 cut(s) 506, 552, 1087, 1207
BmtI GCTAGC 1 cut(s) 1059
BmuI ACTGGG 2 cut(s) 549, 816
BpiI GAAGAC 2 cut(s) 323, 750
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpmI CTGGAG 1 cut(s) 1123
Bpu1102I GCTNAGC 1 cut(s) 1145
BpuEI CTTGAG 1 cut(s) 1055
BpuMI CCSGG 1 cut(s) 76
Bsa29I ATCGAT 1 cut(s) 1095
BsaBI GATNNNNATC 1 cut(s) 878
BsaJI CCNNGG 2 cut(s) 678, 714
Bsc4I CCNNNNNNNGG 1 cut(s) 874
Bse1I ACTGG 4 cut(s) 337, 544, 658, 822
Bse3DI GCAATG 3 cut(s) 384, 402, 1050
Bse8I GATNNNNATC 1 cut(s) 878
BseBI CCWGG 3 cut(s) 15, 143, 1102
BseCI ATCGAT 1 cut(s) 1095
BseDI CCNNGG 2 cut(s) 678, 714
BseGI GGATG 6 cut(s) 60, 769, 1011, 1154, 1222, 1250
BseJI GATNNNNATC 1 cut(s) 878
BseLI CCNNNNNNNGG 1 cut(s) 874
BseMI GCAATG 3 cut(s) 384, 402, 1050
BseMII CTCAG 7 cut(s) 150, 339, 369, 450, 843, 865, 1159
BseNI ACTGG 4 cut(s) 337, 544, 658, 822
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 5 cut(s) 217, 588, 763, 816, 1005
Bsh1285I CGRYCG 1 cut(s) 597
BshFI GGCC 2 cut(s) 132, 1233
BshVI ATCGAT 1 cut(s) 1095
BsiEI CGRYCG 1 cut(s) 597
BsiHKAI GWGCWC 2 cut(s) 124, 1146
BsiSI CCGG 2 cut(s) 76, 1081
BslI CCNNNNNNNGG 1 cut(s) 874
BsmAI GTCTC 1 cut(s) 808
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 2 cut(s) 132, 1233
Bsp1286I GDGCHC 4 cut(s) 124, 356, 549, 1146
Bsp143I GATC 2 cut(s) 594, 879
Bsp1720I GCTNAGC 1 cut(s) 1145
Bsp19I CCATGG 1 cut(s) 714
BspACI CCGC 1 cut(s) 125
BspANI GGCC 2 cut(s) 132, 1233
BspCNI CTCAG 7 cut(s) 149, 340, 368, 451, 842, 864, 1158
BspDI ATCGAT 1 cut(s) 1095
BspMAI CTGCAG 1 cut(s) 781
BspOI GCTAGC 1 cut(s) 1059
BspQI GCTCTTC 1 cut(s) 312
BsrDI GCAATG 3 cut(s) 384, 402, 1050
BsrI ACTGG 4 cut(s) 337, 544, 658, 822
BssECI CCNNGG 2 cut(s) 678, 714
BssMI GATC 2 cut(s) 594, 879
BssSI CACGAG 2 cut(s) 105, 1175
BssT1I CCWWGG 1 cut(s) 714
Bst2BI CACGAG 2 cut(s) 105, 1175
Bst2UI CCWGG 3 cut(s) 15, 143, 1102
Bst4CI ACNGT 4 cut(s) 28, 672, 926, 1188
Bst6I CTCTTC 2 cut(s) 76, 312
BstAPI GCANNNNNTGC 2 cut(s) 674, 1298
BstC8I GCNNGC 7 cut(s) 55, 98, 102, 165, 427, 567, 1057
BstDEI CTNAG 8 cut(s) 136, 348, 355, 459, 829, 851, 1145, 1302
BstDSI CCRYGG 1 cut(s) 714
BstF5I GGATG 6 cut(s) 60, 769, 1011, 1154, 1222, 1250
BstH2I RGCGCY 1 cut(s) 999
BstHHI GCGC 2 cut(s) 998, 1086
BstKTI GATC 2 cut(s) 597, 882
BstMAI GTCTC 1 cut(s) 808
BstMBI GATC 2 cut(s) 594, 879
BstMCI CGRYCG 1 cut(s) 597
BstMWI GCNNNNNNNGC 5 cut(s) 360, 422, 674, 1298, 1307
BstNI CCWGG 3 cut(s) 15, 143, 1102
BstNSI RCATGY 2 cut(s) 100, 429
BstSCI CCNGG 4 cut(s) 13, 74, 141, 1100
BstSFI CTRYAG 4 cut(s) 230, 777, 949, 1000
BstSLI GKGCMC 1 cut(s) 549
BstV1I GCAGC 5 cut(s) 217, 588, 763, 816, 1005
BstV2I GAAGAC 2 cut(s) 323, 750
Bsu15I ATCGAT 1 cut(s) 1095
BsuI GTATCC 1 cut(s) 465
BsuRI GGCC 2 cut(s) 132, 1233
BsuTUI ATCGAT 1 cut(s) 1095
BtgI CCRYGG 1 cut(s) 714
BtsCI GGATG 6 cut(s) 60, 769, 1011, 1154, 1222, 1250
BtsI GCAGTG 2 cut(s) 124, 547
BtsIMutI CAGTG 3 cut(s) 124, 547, 651
Cac8I GCNNGC 7 cut(s) 55, 98, 102, 165, 427, 567, 1057
CfoI GCGC 2 cut(s) 998, 1086
ClaI ATCGAT 1 cut(s) 1095
Csp6I GTAC 5 cut(s) 11, 371, 848, 946, 1162
CviAII CATG 7 cut(s) 97, 426, 715, 982, 1087, 1289, 1321
CviQI GTAC 5 cut(s) 11, 371, 848, 946, 1162
DdeI CTNAG 8 cut(s) 136, 348, 355, 459, 829, 851, 1145, 1302
DpnI GATC 2 cut(s) 596, 881
DpnII GATC 2 cut(s) 594, 879
Eam1104I CTCTTC 2 cut(s) 76, 312
EarI CTCTTC 2 cut(s) 76, 312
Ecl136II GAGCTC 1 cut(s) 1144
Eco130I CCWWGG 1 cut(s) 714
Eco147I AGGCCT 1 cut(s) 1233
Eco24I GRGCYC 2 cut(s) 356, 1146
Eco32I GATATC 1 cut(s) 727
Eco53kI GAGCTC 1 cut(s) 1144
Eco57I CTGAAG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 1144
EcoRII CCWGG 3 cut(s) 13, 141, 1100
EcoRV GATATC 1 cut(s) 727
EcoT14I CCWWGG 1 cut(s) 714
EcoT22I ATGCAT 1 cut(s) 384
EcoT38I GRGCYC 2 cut(s) 356, 1146
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 7 cut(s) 100, 429, 718, 985, 1090, 1292, 1324
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FatI CATG 7 cut(s) 96, 425, 714, 981, 1086, 1288, 1320
FbaI TGATCA 1 cut(s) 879
Fnu4HI GCNGC 5 cut(s) 206, 602, 777, 805, 994
FokI GGATG 6 cut(s) 47, 776, 1018, 1141, 1229, 1257
FriOI GRGCYC 2 cut(s) 356, 1146
Fsp4HI GCNGC 5 cut(s) 206, 602, 777, 805, 994
FspBI CTAG 2 cut(s) 434, 1056
GlaI GCGC 2 cut(s) 997, 1085
GluI GCNGC 5 cut(s) 206, 602, 777, 805, 994
GsuI CTGGAG 1 cut(s) 1123
HaeII RGCGCY 1 cut(s) 999
HaeIII GGCC 2 cut(s) 132, 1233
HapII CCGG 2 cut(s) 76, 1081
HhaI GCGC 2 cut(s) 998, 1086
Hin1II CATG 7 cut(s) 100, 429, 718, 985, 1090, 1292, 1324
Hin6I GCGC 2 cut(s) 996, 1084
HinP1I GCGC 2 cut(s) 996, 1084
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 3 cut(s) 409, 511, 833
HpaII CCGG 2 cut(s) 76, 1081
HphI GGTGA 4 cut(s) 730, 874, 889, 900
Hpy166II GTNNAC 4 cut(s) 11, 24, 289, 784
Hpy188I TCNGA 7 cut(s) 139, 349, 358, 536, 832, 854, 873
Hpy188III TCNNGA 2 cut(s) 311, 633
Hpy8I GTNNAC 4 cut(s) 11, 24, 289, 784
HpyAV CCTTC 4 cut(s) 182, 654, 712, 1055
HpyCH4III ACNGT 4 cut(s) 28, 672, 926, 1188
HpyF10VI GCNNNNNNNGC 5 cut(s) 360, 422, 674, 1298, 1307
HpyF3I CTNAG 8 cut(s) 136, 348, 355, 459, 829, 851, 1145, 1302
Hsp92II CATG 7 cut(s) 100, 429, 718, 985, 1090, 1292, 1324
HspAI GCGC 2 cut(s) 996, 1084
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 2 cut(s) 594, 879
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 5 cut(s) 217, 588, 763, 816, 1005
LweI GCATC 4 cut(s) 506, 552, 1087, 1207
MaeI CTAG 2 cut(s) 434, 1056
MaeIII GTNAC 2 cut(s) 610, 625
MalI GATC 2 cut(s) 596, 881
MboI GATC 2 cut(s) 594, 879
MboII GAAGA 5 cut(s) 63, 246, 299, 328, 755
MfeI CAATTG 1 cut(s) 480
MhlI GDGCHC 4 cut(s) 124, 356, 549, 1146
MluCI AATT 5 cut(s) 268, 480, 689, 1010, 1260
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 2 cut(s) 601, 1222
Mph1103I ATGCAT 1 cut(s) 384
MseI TTAA 1 cut(s) 419
MspA1I CMGCKG 2 cut(s) 261, 776
MspI CCGG 2 cut(s) 76, 1081
MspR9I CCNGG 4 cut(s) 15, 76, 143, 1102
MunI CAATTG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 3 cut(s) 15, 143, 1102
MwoI GCNNNNNNNGC 5 cut(s) 360, 422, 674, 1298, 1307
NciI CCSGG 1 cut(s) 76
NcoI CCATGG 1 cut(s) 714
NdeII GATC 2 cut(s) 594, 879
NheI GCTAGC 1 cut(s) 1055
NlaIII CATG 7 cut(s) 100, 429, 718, 985, 1090, 1292, 1324
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 1 cut(s) 625
NsiI ATGCAT 1 cut(s) 384
NspI RCATGY 2 cut(s) 100, 429
PaeI GCATGC 2 cut(s) 100, 429
PceI AGGCCT 1 cut(s) 1233
PciSI GCTCTTC 1 cut(s) 312
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 2 cut(s) 511, 833
PflMI CCANNNNNTGG 1 cut(s) 874
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 5 cut(s) 207, 603, 778, 806, 995
Ple19I CGATCG 1 cut(s) 597
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 1146
Psp6I CCWGG 3 cut(s) 13, 141, 1100
PspGI CCWGG 3 cut(s) 13, 141, 1100
PstI CTGCAG 1 cut(s) 781
PvuI CGATCG 1 cut(s) 597
PvuII CAGCTG 2 cut(s) 261, 776
RsaI GTAC 5 cut(s) 12, 372, 849, 947, 1163
RsaNI GTAC 5 cut(s) 11, 371, 848, 946, 1162
SacI GAGCTC 1 cut(s) 1146
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 5 cut(s) 206, 602, 777, 805, 994
Sau3AI GATC 2 cut(s) 594, 879
ScaI AGTACT 1 cut(s) 849
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 4 cut(s) 15, 76, 143, 1102
SduI GDGCHC 4 cut(s) 124, 356, 549, 1146
SfaNI GCATC 4 cut(s) 506, 552, 1087, 1207
SfcI CTRYAG 4 cut(s) 230, 777, 949, 1000
SmlI CTYRAG 1 cut(s) 1034
SmoI CTYRAG 1 cut(s) 1034
SphI GCATGC 2 cut(s) 100, 429
Sse9I AATT 5 cut(s) 268, 480, 689, 1010, 1260
SseBI AGGCCT 1 cut(s) 1233
SsiI CCGC 1 cut(s) 125
SspMI CTAG 2 cut(s) 434, 1056
SstI GAGCTC 1 cut(s) 1146
StuI AGGCCT 1 cut(s) 1233
StyD4I CCNGG 4 cut(s) 13, 74, 141, 1100
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 4 cut(s) 28, 672, 926, 1188
TaqI TCGA 5 cut(s) 407, 580, 597, 891, 1095
TasI AATT 5 cut(s) 268, 480, 689, 1010, 1260
TatI WGTACW 3 cut(s) 370, 847, 945
TfiI GAWTC 2 cut(s) 511, 833
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TscAI CASTG 3 cut(s) 124, 554, 658
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 5 cut(s) 205, 601, 776, 804, 993
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 5 cut(s) 49, 508, 756, 948, 1103
TspRI CASTG 3 cut(s) 124, 554, 658
Van91I CCANNNNNTGG 1 cut(s) 874
XapI RAATTY 1 cut(s) 268
XceI RCATGY 2 cut(s) 100, 429
XspI CTAG 2 cut(s) 434, 1056
ZrmI AGTACT 1 cut(s) 849
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.