Rorug01G0115600

DELLA protein GAI1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016384
Physical Location & Seq
Forward (+)
20321554 .. 20322973
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0115600.1

Sequence Viewer

Length: 696 bp
ATGGCATCCATGGCTACCTGCTTCACTCTTCCACCAATCCCTCGTCATCTTCTCGTTTTCAAAGCTGCACTTTTACCTAATCGTTCCCAAACCTCCAATTTCCCGGGCGCTGCCTCCAGGGTTCCACAATCTAGGGCTTCCGTGCCGGTTGTCAGAGCCAGCATTGCAGCGATCAGGCCCGGCGGTGCCGTCGAGAACGATAAGTTACCTTCCGACGTCTCCGATGAAGGCGATGTACTCTATGTTTTTCCCAGAGATTATCGAGCAAAACTTGTAGGCAGATCTTTCATAATGAGAGTTGAGCCGCTGCTTGAGAAGGCAAAGGCTGGGGCTGAGTATTTAGCAAGGGTTTCATTTGGAACTACTCTGATTGCTTCCATTATTCTTGTGTTCGCTGCAATTCTTGTTGCCCTTATAGCCATTGCCTTAAATGAAAATGTTGATGTCATCCCGTCGACGTCTTCAACTTCTTCTTTCGCTAGTGGAGGAAGCTCATATCGGACGAGTTATGATTATTCAATTGATGTTTTTCCCTCGTGTCGGACTGAAGTGTATCGGAAGCAAAAAGAAAAACCACAACCAGTTGTTGGGACGTTGAAATTTGGTGAATCTTTTTTCTCATTTGTATTTGGCGATGGTGATCCGAATCGAGGAATCAAAGAAAAGAGATGGAAGCTGGTAATGATCAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

231

Amino Acids

25.22

Weight (kDa)

9.63

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06460
malus_domestica MD13G1155900.v1.1
prunus_persica Prupe.1G119200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0334751
rosa_laevigata RLG00000029425
rosa_multiflora Rmu_sc0000574.1_g000025 Rmu_sc0006031.1_g000013 Rmu_sc0015370.1_g000002
rosa_roxburghii Rroxscaffold_4G00316620
rosa_rugosa Rorug01G0115600
rosa_samantha Rh1AG140600 Rh1BG107700 Rh1CG132500 Rh1DG144600
rosa_wichuraiana Rw1G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 219, 461
Acc36I ACCTGC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 587
AccI GTMKAC 1 cut(s) 455
AciI CCGC 2 cut(s) 183, 305
AclWI GGATC 1 cut(s) 635
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 567
AcyI GRCGYC 2 cut(s) 216, 458
AfaI GTAC 2 cut(s) 237, 692
AfiI CCNNNNNNNGG 3 cut(s) 540, 587, 650
AgsI TTSAA 4 cut(s) 61, 465, 519, 598
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 3 cut(s) 65, 492, 676
AluI AGCT 3 cut(s) 65, 492, 676
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 103
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 5 cut(s) 65, 110, 167, 307, 395
ApoI RAATTY 1 cut(s) 599
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 177
AsuC2I CCSGG 3 cut(s) 104, 105, 180
AsuHPI GGTGA 2 cut(s) 617, 650
AvaI CYCGRG 1 cut(s) 103
BanI GGYRCC 1 cut(s) 185
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
BauI CACGAG 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 5 cut(s) 52, 97, 179, 294, 382
BccI CCATC 2 cut(s) 629, 663
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 118
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 3 cut(s) 104, 105, 180
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 132, 480
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 26
BglII AGATCT 1 cut(s) 281
BisI GCNGC 6 cut(s) 66, 111, 168, 305, 308, 396
BlsI GCNGC 6 cut(s) 67, 112, 169, 306, 309, 397
BmcAI AGTACT 1 cut(s) 692
Bme1390I CCNGG 4 cut(s) 104, 105, 118, 180
BmeT110I CYCGRG 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 123, 187
BmrFI CCNGG 4 cut(s) 104, 105, 118, 180
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 3 cut(s) 104, 105, 180
BsaBI GATNNNNATC 2 cut(s) 639, 645
BsaHI GRCGYC 2 cut(s) 216, 458
BsaJI CCNNGG 3 cut(s) 9, 103, 117
Bsc4I CCNNNNNNNGG 3 cut(s) 540, 587, 650
Bse118I RCCGGY 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 2 cut(s) 162, 420
Bse8I GATNNNNATC 2 cut(s) 639, 645
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 9, 103, 117
BseGI GGATG 2 cut(s) 5, 447
BseJI GATNNNNATC 2 cut(s) 639, 645
BseLI CCNNNNNNNGG 3 cut(s) 540, 587, 650
BseMI GCAATG 2 cut(s) 162, 420
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 581
BseXI GCAGC 5 cut(s) 52, 97, 179, 294, 382
BseYI CCCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 3 cut(s) 104, 146, 180
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 3 cut(s) 540, 587, 650
BsmAI GTCTC 1 cut(s) 223
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 604
BsnI GGCC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 103
Bsp143I GATC 4 cut(s) 171, 281, 640, 684
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 2 cut(s) 183, 305
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 123, 187
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 635
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 162, 420
BsrFI RCCGGY 1 cut(s) 145
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 3 cut(s) 9, 103, 117
BssMI GATC 4 cut(s) 171, 281, 640, 684
BssNI GRCGYC 2 cut(s) 216, 458
BssSI CACGAG 1 cut(s) 535
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 535
Bst2UI CCWGG 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 2 cut(s) 216, 458
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 5, 447
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 4 cut(s) 174, 284, 643, 687
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 4 cut(s) 171, 281, 640, 684
BstMWI GCNNNNNNNGC 3 cut(s) 11, 164, 416
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 4 cut(s) 102, 103, 116, 178
BstV1I GCAGC 5 cut(s) 52, 97, 179, 294, 382
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 9
BtgZI GCGATG 2 cut(s) 246, 648
BtsCI GGATG 2 cut(s) 5, 447
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 177
Cfr9I CCCGGG 1 cut(s) 103
Csp6I GTAC 2 cut(s) 236, 691
CviAII CATG 1 cut(s) 10
CviQI GTAC 2 cut(s) 236, 691
DdeI CTNAG 1 cut(s) 333
DpnI GATC 4 cut(s) 173, 283, 642, 686
DpnII GATC 4 cut(s) 171, 281, 640, 684
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 1 cut(s) 13
FaiI YATR 6 cut(s) 11, 243, 290, 416, 496, 510
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 1 cut(s) 604
FatI CATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 684
FblI GTMKAC 1 cut(s) 455
Fnu4HI GCNGC 6 cut(s) 66, 111, 168, 305, 308, 396
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 6 cut(s) 66, 111, 168, 305, 308, 396
FspBI CTAG 2 cut(s) 132, 480
GlaI GCGC 1 cut(s) 109
GluI GCNGC 6 cut(s) 66, 111, 168, 305, 308, 396
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 178
HapII CCGG 3 cut(s) 104, 146, 180
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 2 cut(s) 216, 458
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HinfI GANTC 3 cut(s) 608, 646, 654
HpaII CCGG 3 cut(s) 104, 146, 180
HphI GGTGA 2 cut(s) 617, 650
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 8 cut(s) 155, 214, 223, 369, 501, 543, 558, 645
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 456
Hpy99I CGWCG 4 cut(s) 194, 218, 457, 460
HpyAV CCTTC 3 cut(s) 219, 221, 310
HpyCH4IV ACGT 3 cut(s) 216, 458, 593
HpyCH4V TGCA 3 cut(s) 68, 167, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 164, 416
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 3 cut(s) 216, 458, 593
Hsp92I GRCGYC 2 cut(s) 216, 458
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 4 cut(s) 171, 281, 640, 684
Lsp1109I GCAGC 5 cut(s) 52, 97, 179, 294, 382
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 132, 480
MaeII ACGT 3 cut(s) 216, 458, 593
MaeIII GTNAC 1 cut(s) 204
MalI GATC 4 cut(s) 173, 283, 642, 686
MboI GATC 4 cut(s) 171, 281, 640, 684
MboII GAAGA 4 cut(s) 20, 41, 453, 462
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 281
MluCI AATT 4 cut(s) 97, 399, 519, 599
MmeI TCCRAC 2 cut(s) 237, 521
MnlI CCTC 6 cut(s) 51, 103, 124, 479, 544, 644
MseI TTAA 1 cut(s) 428
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 3 cut(s) 104, 146, 180
MspR9I CCNGG 4 cut(s) 104, 105, 118, 180
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 11, 164, 416
NciI CCSGG 3 cut(s) 104, 105, 180
NcoI CCATGG 1 cut(s) 9
NdeII GATC 4 cut(s) 171, 281, 640, 684
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 2 cut(s) 123, 187
PfeI GAWTC 3 cut(s) 608, 646, 654
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 6 cut(s) 67, 112, 169, 306, 309, 397
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 123, 187
PspPI GGNCC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 2 cut(s) 237, 692
RsaNI GTAC 2 cut(s) 236, 691
SalI GTCGAC 1 cut(s) 454
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 6 cut(s) 66, 111, 168, 305, 308, 396
Sau3AI GATC 4 cut(s) 171, 281, 640, 684
Sau96I GGNCC 1 cut(s) 177
ScaI AGTACT 1 cut(s) 692
ScrFI CCNGG 4 cut(s) 104, 105, 118, 180
SfaNI GCATC 1 cut(s) 14
SgrDI CGTCGACG 1 cut(s) 454
SmaI CCCGGG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 4 cut(s) 97, 399, 519, 599
SsiI CCGC 2 cut(s) 183, 305
SspMI CTAG 2 cut(s) 132, 480
StyD4I CCNGG 4 cut(s) 102, 103, 116, 178
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 3 cut(s) 219, 461, 596
TaqI TCGA 4 cut(s) 192, 262, 455, 649
TasI AATT 4 cut(s) 97, 399, 519, 599
TatI WGTACW 2 cut(s) 235, 690
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 3 cut(s) 608, 646, 654
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TseI GCWGC 5 cut(s) 65, 110, 167, 307, 395
TspDTI ATGAA 4 cut(s) 240, 277, 342, 447
TspGWI ACGGA 1 cut(s) 130
TspMI CCCGGG 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 587
XapI RAATTY 1 cut(s) 599
XmaI CCCGGG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 455
XspI CTAG 2 cut(s) 132, 480
ZraI GACGTC 2 cut(s) 217, 459
ZrmI AGTACT 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.