MD13G1155900.v1.1

DELLA protein GAI1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016384
Physical Location & Seq
Forward (+)
12134055 .. 12135380
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1155900.v1.1.491

Sequence Viewer

Length: 1326 bp
ATGAGTTGTGCCTCTGGATTGTCAACTGTCGAAGTAATGAGAGTTGCAAGGGAACGGTTCATACAGTTCTCTTCCCGGAGGCAAACAGATGACTGCATGGCTGACCATGTTCTAGGCAGCACTCCCTTCGGCCTCTCAGACCAAGAAACAAAAGATGTTGGGCTTGCGCACCTTCTTTTAGCTTGTGCTGAGAAGGTTGCAAAGAAACAATATGGCTGCGCGAAAAAGCTGCAGAATCTATGTGATTTCCTGTCTTCCAGTAGCGGAAATTCTGTTCAAAGAGTTGTTTACTATTTTTCCAAAGCTCTCCAACAGAAGGCTGACAGAGAAACTGGCAGAAACACATCACAGGGATCGGAAAGTAGAGATGTTGCCACTATGCATGTCGAGGAAGCAATGGCGGCTTTAAGTCCTTCTTTAATGGCATGTTTCCTTGAAGTTCCCTTCTTTCAAGTTACCGAGTTTGCGGGCATCCAAGCGATTGTGGAGAGTGTGGCATCAACCAAAAAGATTCATTTCGTTGACCTTGCAATCAGAACCGGGGCGCACTGCATCGTGTTGATGCAAGCGCTTGCGACAAGATATGAATGCCCAATTGAGATGCTAAAAGTTACTGCTGTTGGAGTGAAATCAAGGAAGAAAATTGAGGACACCGGCAGAAGGCTGGCTCAATTTGCTGAGGCATTGAAGTTACCTTTTACCTTCAAGATAGCCATGGTAAAAGATATCAAAGATATCAAAGAAGGTATCTTTGAGTTAGATACTGGTGAAGCAGTTGCAGTTTACTGCCCTCTACTGCTATCCAGTATAATGAGCCAACCCAATTGCTTGGAATCTCTGATGAAAGCCCTCAGAAGCCTCAATCCGCGCCTCATGGTGGTCAAAGAAGTCGAGGCAAATCACAACTCTCCGATCTTCATAAACCGTTTCTACGAAGCACTCTTCTACTACAGTGCATTTTTTGAGTGCCTCGATGCCTGTATGGACAGAGGCAGCGCGCTACGGATGGAGTTGGAGGAAACATATTTGAGTCTTGATATCAAGAACATTGTTGCGAGTGAAGACGAAGAGAGGGTAAACTGGCGGATGAAAATCGATGGGTGGAGGAGTTTGTTTGGAAAATGTGGAATGGTGGAAGCAGATCTTAGCTTGTCATCCCTGTACCAAGCAGACCTTACGGCCAAACAGTTTGCTTGTGGGAGGAGTTGCACAATGGGGACCAACGGGAAGTGCCTTCTTGTTGGATGGAAAGGAACTCCAATTCTCTCTCTTTCTGTTTGGAAGTTCCATGCAGTCAATGTTAAGACTTTCAAACGTCTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

442

Amino Acids

49.18

Weight (kDa)

8.25

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 56 - 428 4.9e-81 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06460
malus_domestica MD13G1155900.v1.1
prunus_persica Prupe.1G119200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0334751
rosa_laevigata RLG00000029425
rosa_multiflora Rmu_sc0000574.1_g000025 Rmu_sc0006031.1_g000013 Rmu_sc0015370.1_g000002
rosa_roxburghii Rroxscaffold_4G00316620
rosa_rugosa Rorug01G0115600
rosa_samantha Rh1AG140600 Rh1BG107700 Rh1CG132500 Rh1DG144600
rosa_wichuraiana Rw1G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 168
AccII CGCG 3 cut(s) 221, 868, 998
AciI CCGC 5 cut(s) 264, 401, 467, 866, 1084
AclWI GGATC 1 cut(s) 361
AcoI YGGCCR 1 cut(s) 1179
AcsI RAATTY 1 cut(s) 268
AfaI GTAC 1 cut(s) 1163
AfeI AGCGCT 1 cut(s) 570
AfiI CCNNNNNNNGG 3 cut(s) 316, 660, 877
AgsI TTSAA 6 cut(s) 278, 437, 452, 688, 706, 1312
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 4 cut(s) 182, 229, 305, 1149
AluI AGCT 4 cut(s) 182, 229, 305, 1149
Alw26I GTCTC 1 cut(s) 1322
AlwI GGATC 1 cut(s) 361
Aor51HI AGCGCT 1 cut(s) 570
AoxI GGCC 2 cut(s) 130, 1179
ApeKI GCWGC 4 cut(s) 117, 216, 229, 993
ApoI RAATTY 1 cut(s) 268
AspLEI GCGC 7 cut(s) 169, 221, 547, 571, 870, 998, 1000
AspS9I GGNCC 1 cut(s) 1218
AsuC2I CCSGG 2 cut(s) 76, 541
AsuHPI GGTGA 1 cut(s) 779
AvaII GGWCC 1 cut(s) 1218
BbsI GAAGAC 2 cut(s) 246, 1068
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 4 cut(s) 129, 203, 216, 1005
BccI CCATC 3 cut(s) 1000, 1091, 1239
BceAI ACGGC 1 cut(s) 1194
BcgI CGANNNNNNTGC 4 cut(s) 109, 143, 211, 245
BcnI CCSGG 2 cut(s) 76, 541
BcoDI GTCTC 1 cut(s) 1322
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 2 cut(s) 230, 949
BfoI RGCGCY 1 cut(s) 572
BglII AGATCT 1 cut(s) 1141
BisI GCNGC 5 cut(s) 118, 217, 230, 402, 994
BlsI GCNGC 5 cut(s) 119, 218, 231, 403, 995
Bme1390I CCNGG 2 cut(s) 76, 541
Bme18I GGWCC 1 cut(s) 1218
BmgT120I GGNCC 1 cut(s) 1218
BmiI GGNNCC 1 cut(s) 1219
BmrFI CCNGG 2 cut(s) 76, 541
BmsI GCATC 6 cut(s) 480, 506, 552, 561, 591, 964
BpiI GAAGAC 2 cut(s) 246, 1068
Bpu10I CCTNAGC 1 cut(s) 678
BpuMI CCSGG 2 cut(s) 76, 541
Bsa29I ATCGAT 1 cut(s) 1095
BsaBI GATNNNNATC 1 cut(s) 1091
BsaJI CCNNGG 2 cut(s) 540, 714
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 660, 877
Bse118I RCCGGY 1 cut(s) 653
Bse1I ACTGG 5 cut(s) 258, 337, 769, 804, 1085
Bse3DI GCAATG 1 cut(s) 402
Bse8I GATNNNNATC 1 cut(s) 1091
BseCI ATCGAT 1 cut(s) 1095
BseDI CCNNGG 2 cut(s) 540, 714
BseGI GGATG 5 cut(s) 471, 1011, 1092, 1154, 1250
BseJI GATNNNNATC 1 cut(s) 1091
BseLI CCNNNNNNNGG 3 cut(s) 316, 660, 877
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 4 cut(s) 150, 180, 669, 865
BseNI ACTGG 5 cut(s) 258, 337, 769, 804, 1085
BsePI GCGCGC 1 cut(s) 996
BseRI GAGGAG 2 cut(s) 1120, 1216
BseXI GCAGC 4 cut(s) 129, 203, 216, 1005
Bsh1236I CGCG 3 cut(s) 221, 868, 998
BshFI GGCC 2 cut(s) 132, 1181
BshVI ATCGAT 1 cut(s) 1095
BsiSI CCGG 3 cut(s) 76, 540, 654
BslFI GGGAC 1 cut(s) 1231
BslI CCNNNNNNNGG 3 cut(s) 316, 660, 877
BsmAI GTCTC 1 cut(s) 1322
BsmBI CGTCTC 1 cut(s) 1322
BsmFI GGGAC 1 cut(s) 1231
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 2 cut(s) 132, 1181
Bsp143I GATC 3 cut(s) 353, 912, 1141
Bsp19I CCATGG 1 cut(s) 714
BspACI CCGC 5 cut(s) 264, 401, 467, 866, 1084
BspANI GGCC 2 cut(s) 132, 1181
BspCNI CTCAG 4 cut(s) 149, 181, 670, 864
BspDI ATCGAT 1 cut(s) 1095
BspFNI CGCG 3 cut(s) 221, 868, 998
BspLI GGNNCC 1 cut(s) 1219
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 653
BsrI ACTGG 5 cut(s) 258, 337, 769, 804, 1085
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 2 cut(s) 540, 714
BssHII GCGCGC 1 cut(s) 996
BssMI GATC 3 cut(s) 353, 912, 1141
BssT1I CCWWGG 1 cut(s) 714
Bst4CI ACNGT 6 cut(s) 28, 57, 66, 926, 953, 1188
Bst6I CTCTTC 3 cut(s) 76, 947, 1062
BstC8I GCNNGC 6 cut(s) 165, 469, 567, 573, 666, 998
BstDEI CTNAG 5 cut(s) 136, 189, 678, 851, 1145
BstDSI CCRYGG 1 cut(s) 714
BstF5I GGATG 5 cut(s) 471, 1011, 1092, 1154, 1250
BstFNI CGCG 3 cut(s) 221, 868, 998
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 7 cut(s) 169, 221, 547, 571, 870, 998, 1000
BstKTI GATC 3 cut(s) 356, 915, 1144
BstMAI GTCTC 1 cut(s) 1322
BstMBI GATC 3 cut(s) 353, 912, 1141
BstMWI GCNNNNNNNGC 2 cut(s) 401, 674
BstNSI RCATGY 2 cut(s) 386, 429
BstSCI CCNGG 2 cut(s) 74, 539
BstSFI CTRYAG 2 cut(s) 230, 949
BstUI CGCG 3 cut(s) 221, 868, 998
BstV1I GCAGC 4 cut(s) 129, 203, 216, 1005
BstV2I GAAGAC 2 cut(s) 246, 1068
BstX2I RGATCY 1 cut(s) 1141
BstXI CCANNNNNNTGG 1 cut(s) 829
BstYI RGATCY 1 cut(s) 1141
Bsu15I ATCGAT 1 cut(s) 1095
BsuRI GGCC 2 cut(s) 132, 1181
BsuTUI ATCGAT 1 cut(s) 1095
BtgI CCRYGG 1 cut(s) 714
BtsCI GGATG 5 cut(s) 471, 1011, 1092, 1154, 1250
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 2 cut(s) 547, 958
Cac8I GCNNGC 6 cut(s) 165, 469, 567, 573, 666, 998
CfoI GCGC 7 cut(s) 169, 221, 547, 571, 870, 998, 1000
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 1 cut(s) 1218
ClaI ATCGAT 1 cut(s) 1095
Csp6I GTAC 1 cut(s) 1162
CviAII CATG 7 cut(s) 97, 107, 383, 426, 715, 874, 1289
CviQI GTAC 1 cut(s) 1162
DdeI CTNAG 5 cut(s) 136, 189, 678, 851, 1145
DpnI GATC 3 cut(s) 355, 914, 1143
DpnII GATC 3 cut(s) 353, 912, 1141
EaeI YGGCCR 1 cut(s) 1179
Eam1104I CTCTTC 3 cut(s) 76, 947, 1062
EarI CTCTTC 3 cut(s) 76, 947, 1062
EciI GGCGGA 1 cut(s) 1099
Eco130I CCWWGG 1 cut(s) 714
Eco32I GATATC 3 cut(s) 727, 736, 1039
Eco47I GGWCC 1 cut(s) 1218
Eco47III AGCGCT 1 cut(s) 570
EcoRV GATATC 3 cut(s) 727, 736, 1039
EcoT14I CCWWGG 1 cut(s) 714
EcoT22I ATGCAT 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 714
Esp3I CGTCTC 1 cut(s) 1322
FaeI CATG 7 cut(s) 100, 110, 386, 429, 718, 877, 1292
FalI AAGNNNNNCTT 6 cut(s) 400, 432, 1128, 1160, 1158, 1190
FaqI GGGAC 1 cut(s) 1231
FatI CATG 7 cut(s) 96, 106, 382, 425, 714, 873, 1288
FauI CCCGC 1 cut(s) 460
Fnu4HI GCNGC 5 cut(s) 118, 217, 230, 402, 994
FokI GGATG 5 cut(s) 458, 1018, 1099, 1141, 1257
Fsp4HI GCNGC 5 cut(s) 118, 217, 230, 402, 994
FspBI CTAG 1 cut(s) 113
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 7 cut(s) 168, 220, 546, 570, 869, 997, 999
GluI GCNGC 5 cut(s) 118, 217, 230, 402, 994
HaeII RGCGCY 1 cut(s) 572
HaeIII GGCC 2 cut(s) 132, 1181
HapII CCGG 3 cut(s) 76, 540, 654
HhaI GCGC 7 cut(s) 169, 221, 547, 571, 870, 998, 1000
Hin1II CATG 7 cut(s) 100, 110, 386, 429, 718, 877, 1292
Hin6I GCGC 7 cut(s) 167, 219, 545, 569, 868, 996, 998
HinP1I GCGC 7 cut(s) 167, 219, 545, 569, 868, 996, 998
HincII GTYRAC 2 cut(s) 24, 523
HindII GTYRAC 2 cut(s) 24, 523
HinfI GANTC 4 cut(s) 235, 511, 833, 1030
HpaII CCGG 3 cut(s) 76, 540, 654
HphI GGTGA 1 cut(s) 779
Hpy166II GTNNAC 5 cut(s) 24, 289, 523, 784, 1078
Hpy188I TCNGA 6 cut(s) 139, 358, 536, 840, 854, 912
Hpy188III TCNNGA 4 cut(s) 15, 706, 1034, 1042
Hpy8I GTNNAC 5 cut(s) 24, 289, 523, 784, 1078
HpyCH4III ACNGT 6 cut(s) 28, 57, 66, 926, 953, 1188
HpyCH4IV ACGT 1 cut(s) 1315
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 674
HpyF3I CTNAG 5 cut(s) 136, 189, 678, 851, 1145
HpySE526I ACGT 1 cut(s) 1315
Hsp92II CATG 7 cut(s) 100, 110, 386, 429, 718, 877, 1292
HspAI GCGC 7 cut(s) 167, 219, 545, 569, 868, 996, 998
Kzo9I GATC 3 cut(s) 353, 912, 1141
Lsp1109I GCAGC 4 cut(s) 129, 203, 216, 1005
LweI GCATC 6 cut(s) 480, 506, 552, 561, 591, 964
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 1315
MaeIII GTNAC 3 cut(s) 454, 610, 690
MalI GATC 3 cut(s) 355, 914, 1143
MboI GATC 3 cut(s) 353, 912, 1141
MboII GAAGA 7 cut(s) 63, 246, 649, 907, 934, 1073, 1079
MfeI CAATTG 2 cut(s) 594, 823
MflI RGATCY 1 cut(s) 1141
MluCI AATT 6 cut(s) 268, 594, 642, 671, 823, 1260
MlyI GAGTC 1 cut(s) 1039
MmeI TCCRAC 4 cut(s) 334, 601, 993, 1222
Mph1103I ATGCAT 1 cut(s) 384
MseI TTAA 3 cut(s) 407, 419, 1302
MspI CCGG 3 cut(s) 76, 540, 654
MspR9I CCNGG 2 cut(s) 76, 541
MunI CAATTG 2 cut(s) 594, 823
Mva1269I GAATGC 1 cut(s) 593
MvnI CGCG 3 cut(s) 221, 868, 998
MwoI GCNNNNNNNGC 2 cut(s) 401, 674
NciI CCSGG 2 cut(s) 76, 541
NcoI CCATGG 1 cut(s) 714
NdeII GATC 3 cut(s) 353, 912, 1141
NlaIII CATG 7 cut(s) 100, 110, 386, 429, 718, 877, 1292
NlaIV GGNNCC 1 cut(s) 1219
NsbI TGCGCA 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 384
NspI RCATGY 2 cut(s) 386, 429
PauI GCGCGC 1 cut(s) 996
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 3 cut(s) 235, 511, 833
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 5 cut(s) 119, 218, 231, 403, 995
PleI GAGTC 1 cut(s) 1038
PpsI GAGTC 1 cut(s) 1038
PspN4I GGNNCC 1 cut(s) 1219
PspPI GGNCC 1 cut(s) 1218
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
PstI CTGCAG 1 cut(s) 234
PsuI RGATCY 1 cut(s) 1141
PteI GCGCGC 1 cut(s) 996
RsaI GTAC 1 cut(s) 1163
RsaNI GTAC 1 cut(s) 1162
SaqAI TTAA 3 cut(s) 407, 419, 1302
SatI GCNGC 5 cut(s) 118, 217, 230, 402, 994
Sau3AI GATC 3 cut(s) 353, 912, 1141
Sau96I GGNCC 1 cut(s) 1218
SchI GAGTC 1 cut(s) 1039
ScrFI CCNGG 2 cut(s) 76, 541
SfaNI GCATC 6 cut(s) 480, 506, 552, 561, 591, 964
SfcI CTRYAG 2 cut(s) 230, 949
SinI GGWCC 1 cut(s) 1218
Sse9I AATT 6 cut(s) 268, 594, 642, 671, 823, 1260
SsiI CCGC 5 cut(s) 264, 401, 467, 866, 1084
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 74, 539
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 6 cut(s) 28, 57, 66, 926, 953, 1188
TaiI ACGT 1 cut(s) 1318
TaqI TCGA 5 cut(s) 30, 387, 891, 972, 1095
TasI AATT 6 cut(s) 268, 594, 642, 671, 823, 1260
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 3 cut(s) 235, 511, 833
Tru1I TTAA 3 cut(s) 407, 419, 1302
Tru9I TTAA 3 cut(s) 407, 419, 1302
TscAI CASTG 2 cut(s) 554, 958
TseI GCWGC 4 cut(s) 117, 216, 229, 993
TspDTI ATGAA 6 cut(s) 49, 503, 600, 857, 907, 1103
TspGWI ACGGA 1 cut(s) 1018
TspRI CASTG 2 cut(s) 554, 958
VpaK11BI GGWCC 1 cut(s) 1218
XapI RAATTY 1 cut(s) 268
XceI RCATGY 2 cut(s) 386, 429
XspI CTAG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.