Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016384

Physical Location & Seq

Genomic Coordinates Forward (+)

41596596 .. 41597860

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGAGTAGCAGGAGAATGGTTCATCCAATTCTCTTCCCAAAAGTATGCCGATGACTCCATACCTAAACATGTTTTAGGCTGTGCTCCCCTAGATAAGCTTGGAAAGCAGCAATATGATAGGGCGAGAAAACTGCAGAATCTATGCCATTTCCTATCTTCCAGCACTGGAAATACTGTTCAGAGAGCTGTTTATTATTTTTCTAAAGCTCTTCGAGAAAGGACAGATAGGGAAACTGGGAGAAACACATCTAAGGGCTCAGAAAGTAAGGATTTACTTGCAATGCATTTAGAAAAGACAATGGCTTGTTGTCCTGCTTTCTTTGCTTGTTTCCTCGAACTTCCCTTCTATCAAGCAACTCAGTTTGCCGGGATCCAAGCAATTGTGGAAAGTGTAGCATCGGCCAAAAGAGTTCATTTCATTGACCTTGAGATCAGAACAACGGTTACAGACATCAACAACCTCAATGAAGATGCCTTCGAGTCTGAGGATGGTGAAGCAACTGCAGTCTACTGTTGTCTAATGCGAAGCAGCATGAGGACCCTACCTGATTGCTTGGAATCTGCAATAACAGAGCTCAGAAAGCTCAATCCATGTCTAATGGTGATCACAGAAATCGAAGCAAATCTCTATTCACCAGTTTTTGAAGACCGTTTCAATGAAGCGGTCTTCTTCTATAGTGCTTATTTTGATTGCCTTGATGTCTGTATGGATAATTCCAGTCCATACAGGAGGGAATTGGAAGAGACTTTTTTGGCGCAACAGATTACAAATATTATAGCAAGTGAAGAAGAGAGGATATTCAGGCACATGAAGATTGATGTTTGGAGGAGTTTGTTTGCAAAGTTTGGAATGGTGGAAGCGGAGCTTAGCTTGTCGTCGTTGTACCAAGCAGACCTTACTGCTAAGCAATTTGCATGTGGGAAATCATGCACATTGGATATGAATGGGAAATGCCTCACCATTGGATGGAGAGGAACAACAATTCTCTCTCTTTCTGCTTGGAAGTTCACTGCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GRAS

Protein Analysis

340

Amino Acids

38.6

Weight (kDa)

5.44

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	40 - 147	3.7e-10	GRAS domain family
GRAS	PF03514	144 - 336	5.2e-35	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016384)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06460
malus_domestica	MD13G1155900.v1.1
prunus_persica	Prupe.1G119200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0334751
rosa_laevigata	RLG00000029425
rosa_multiflora	Rmu_sc0000574.1_g000025 Rmu_sc0006031.1_g000013 Rmu_sc0015370.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316620
rosa_rugosa	Rorug01G0115600
rosa_samantha	Rh1AG140600 Rh1BG107700 Rh1CG132500 Rh1DG144600
rosa_wichuraiana	Rw1G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	969
AccI	GTMKAC	1 cut(s)	510
AciI	CCGC	2 cut(s)	665, 863
AclWI	GGATC	2 cut(s)	367, 380
AcoI	YGGCCR	1 cut(s)	402
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	1 cut(s)	969
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	647, 658
AloI	GAACNNNNNNTCC	2 cut(s)	162, 194
AluBI	AGCT	7 cut(s)	100, 188, 209, 577, 586, 868, 873
AluI	AGCT	7 cut(s)	100, 188, 209, 577, 586, 868, 873
Alw21I	GWGCWC	2 cut(s)	88, 579
Alw26I	GTCTC	1 cut(s)	740
AlwI	GGATC	2 cut(s)	367, 380
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	3 cut(s)	109, 531, 1016
AspLEI	GCGC	1 cut(s)	760
AspS9I	GGNCC	1 cut(s)	540
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	4 cut(s)	506, 616, 627, 952
AvaII	GGWCC	1 cut(s)	540
BamHI	GGATCC	1 cut(s)	372
BanII	GRGCYC	2 cut(s)	260, 579
BbsI	GAAGAC	2 cut(s)	654, 661
Bbv12I	GWGCWC	2 cut(s)	88, 579
BbvI	GCAGC	2 cut(s)	121, 543
BccI	CCATC	2 cut(s)	485, 963
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BclI	TGATCA	1 cut(s)	606
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	740
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	4 cut(s)	134, 504, 676, 1014
BisI	GCNGC	3 cut(s)	110, 532, 1017
BlpI	GCTNAGC	2 cut(s)	869, 906
BlsI	GCNGC	3 cut(s)	111, 533, 1018
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	2 cut(s)	374, 542
BmrFI	CCNGG	1 cut(s)	370
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	407, 463
BmuI	ACTGGG	1 cut(s)	246
BpiI	GAAGAC	2 cut(s)	654, 661
Bpu1102I	GCTNAGC	2 cut(s)	869, 906
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	969
Bse1I	ACTGG	4 cut(s)	172, 241, 638, 720
Bse3DI	GCAATG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	24, 496, 974
BseLI	CCNNNNNNNGG	1 cut(s)	969
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	4 cut(s)	273, 374, 477, 592
BseNI	ACTGG	4 cut(s)	172, 241, 638, 720
BseRI	GAGGAG	1 cut(s)	844
BseXI	GCAGC	2 cut(s)	121, 543
BshFI	GGCC	1 cut(s)	404
BsiHKAI	GWGCWC	2 cut(s)	88, 579
BsiSI	CCGG	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	969
BsmAI	GTCTC	1 cut(s)	740
BsnI	GGCC	1 cut(s)	404
Bsp1286I	GDGCHC	3 cut(s)	88, 260, 579
Bsp143I	GATC	3 cut(s)	372, 432, 606
Bsp1720I	GCTNAGC	2 cut(s)	869, 906
BspACI	CCGC	2 cut(s)	665, 863
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	4 cut(s)	272, 373, 478, 591
BspLI	GGNNCC	2 cut(s)	374, 542
BspMAI	CTGCAG	3 cut(s)	138, 508, 1018
BspPI	GGATC	2 cut(s)	367, 380
BspQI	GCTCTTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	4 cut(s)	172, 241, 638, 720
BssMI	GATC	3 cut(s)	372, 432, 606
Bst4CI	ACNGT	4 cut(s)	178, 445, 515, 653
Bst6I	CTCTTC	4 cut(s)	40, 216, 738, 786
BstDEI	CTNAG	7 cut(s)	252, 259, 360, 486, 578, 869, 906
BstF5I	GGATG	3 cut(s)	24, 496, 974
BstHHI	GCGC	1 cut(s)	760
BstKTI	GATC	3 cut(s)	375, 435, 609
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	3 cut(s)	372, 432, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 323, 583
BstNSI	RCATGY	2 cut(s)	74, 921
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	4 cut(s)	134, 504, 676, 1014
BstV1I	GCAGC	2 cut(s)	121, 543
BstV2I	GAAGAC	2 cut(s)	654, 661
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	404
BtsCI	GGATG	3 cut(s)	24, 496, 974
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	2 cut(s)	165, 1011
CfoI	GCGC	1 cut(s)	760
Cfr13I	GGNCC	1 cut(s)	540
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	6 cut(s)	71, 535, 594, 811, 918, 930
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	7 cut(s)	252, 259, 360, 486, 578, 869, 906
DpnI	GATC	3 cut(s)	374, 434, 608
DpnII	GATC	3 cut(s)	372, 432, 606
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	4 cut(s)	40, 216, 738, 786
EarI	CTCTTC	4 cut(s)	40, 216, 738, 786
Ecl136II	GAGCTC	1 cut(s)	577
Eco24I	GRGCYC	2 cut(s)	260, 579
Eco47I	GGWCC	1 cut(s)	540
Eco53kI	GAGCTC	1 cut(s)	577
EcoICRI	GAGCTC	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	540
EcoT22I	ATGCAT	1 cut(s)	288
EcoT38I	GRGCYC	2 cut(s)	260, 579
FaeI	CATG	6 cut(s)	74, 538, 597, 814, 921, 933
FalI	AAGNNNNNCTT	4 cut(s)	852, 884, 882, 914
FatI	CATG	6 cut(s)	70, 534, 593, 810, 917, 929
FbaI	TGATCA	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	3 cut(s)	110, 532, 1017
FokI	GGATG	3 cut(s)	11, 503, 981
FriOI	GRGCYC	2 cut(s)	260, 579
Fsp4HI	GCNGC	3 cut(s)	110, 532, 1017
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	759
GluI	GCNGC	3 cut(s)	110, 532, 1017
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	369
HhaI	GCGC	1 cut(s)	760
Hin1II	CATG	6 cut(s)	74, 538, 597, 814, 921, 933
Hin6I	GCGC	1 cut(s)	758
HinP1I	GCGC	1 cut(s)	758
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	4 cut(s)	56, 139, 482, 560
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	4 cut(s)	506, 616, 627, 952
Hpy166II	GTNNAC	2 cut(s)	511, 1011
Hpy188I	TCNGA	5 cut(s)	183, 262, 437, 487, 581
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	511, 1011
Hpy99I	CGWCG	1 cut(s)	883
HpyAV	CCTTC	2 cut(s)	355, 487
HpyCH4III	ACNGT	4 cut(s)	178, 445, 515, 653
HpyCH4V	TGCA	9 cut(s)	136, 281, 286, 506, 566, 842, 917, 933, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 323, 583
HpyF3I	CTNAG	7 cut(s)	252, 259, 360, 486, 578, 869, 906
Hsp92II	CATG	6 cut(s)	74, 538, 597, 814, 921, 933
HspAI	GCGC	1 cut(s)	758
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	3 cut(s)	372, 432, 606
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	91, 865
Lsp1109I	GCAGC	2 cut(s)	121, 543
LweI	GCATC	2 cut(s)	407, 463
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	3 cut(s)	374, 434, 608
MboI	GATC	3 cut(s)	372, 432, 606
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	3 cut(s)	88, 260, 579
MluCI	AATT	6 cut(s)	29, 381, 715, 737, 911, 984
MlyI	GAGTC	2 cut(s)	50, 491
MnlI	CCTC	9 cut(s)	344, 473, 481, 531, 726, 789, 822, 968, 968
Mph1103I	ATGCAT	1 cut(s)	288
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	370
MunI	CAATTG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	106, 323, 583
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	3 cut(s)	372, 432, 606
NlaIII	CATG	6 cut(s)	74, 538, 597, 814, 921, 933
NlaIV	GGNNCC	2 cut(s)	374, 542
NsiI	ATGCAT	1 cut(s)	288
NspI	RCATGY	2 cut(s)	74, 921
PciI	ACATGT	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	139, 560
PflMI	CCANNNNNTGG	1 cut(s)	969
PkrI	GCNGC	3 cut(s)	111, 533, 1018
PleI	GAGTC	2 cut(s)	50, 490
PpsI	GAGTC	2 cut(s)	50, 490
PpuMI	RGGWCCY	1 cut(s)	540
PscI	ACATGT	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	540
PspN4I	GGNNCC	2 cut(s)	374, 542
PspPI	GGNCC	1 cut(s)	540
PspPPI	RGGWCCY	1 cut(s)	540
PsrI	GAACNNNNNNTAC	2 cut(s)	430, 462
PstI	CTGCAG	3 cut(s)	138, 508, 1018
PsuI	RGATCY	1 cut(s)	372
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
SacI	GAGCTC	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	216
SatI	GCNGC	3 cut(s)	110, 532, 1017
Sau3AI	GATC	3 cut(s)	372, 432, 606
Sau96I	GGNCC	1 cut(s)	540
SchI	GAGTC	2 cut(s)	50, 491
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	3 cut(s)	88, 260, 579
SfaNI	GCATC	2 cut(s)	407, 463
SfcI	CTRYAG	4 cut(s)	134, 504, 676, 1014
SinI	GGWCC	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	6 cut(s)	29, 381, 715, 737, 911, 984
SsiI	CCGC	2 cut(s)	665, 863
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	368
TaaI	ACNGT	4 cut(s)	178, 445, 515, 653
TaqI	TCGA	4 cut(s)	214, 336, 480, 618
TasI	AATT	6 cut(s)	29, 381, 715, 737, 911, 984
TfiI	GAWTC	2 cut(s)	139, 560
TscAI	CASTG	2 cut(s)	172, 1018
TseI	GCWGC	3 cut(s)	109, 531, 1016
TspDTI	ATGAA	7 cut(s)	13, 404, 409, 483, 675, 827, 959
TspRI	CASTG	2 cut(s)	172, 1018
Van91I	CCANNNNNTGG	1 cut(s)	969
VpaK11BI	GGWCC	1 cut(s)	540
XceI	RCATGY	2 cut(s)	74, 921
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.