Rmu_sc0000574.1_g000025

DELLA protein GAI1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000574.1
OG0016384
Physical Location & Seq
Reverse (-)
61842 .. 63140
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000574.1_g000025.1.cds

Sequence Viewer

Length: 1299 bp
atgagttctgtttccagattatcaactgtagaagtaatgagagtagcaggagcaaggttcatccaattctcttcccaaaagtatgccgatgactccattcctaaacatgttttaggctgtgctcccctaggtctctcagaccaggaagtcaaagaggttgagattgcacaacttcttttagcttttgcagatgaggttggaaagcaacaatatgatcgggcgagaaaactgcagaatctatgccatttcctatcttccagcactggaaatactgttcagagagttgtttattatttttctaaagctcttagagaaaggacagatagggaaactgggagaaacacgtccaagggctcagaaagtaaggatttacttgcaatgcatttagaaaagacaatggcttgttgtcctgctttctttgcttgtttcctcaaacttcccttctatcaagtaactcagtttgctgggatccaagcaattgtggaaagtgtagcatcggccaaaagagttcatttcattgaccttgagatcagaagtggggggcagtgcatagtgttgatgcaagctcttgcgtcaagatatgaacaaccaattgagatgctaaaagttactgcagttggaagtggaactgcatcaagacaaaagctagaggacaccggcaaaaggttggctcagtttgctgaggcattacatttgcccttttcctttaaaatagcaacggttacaggcatcaacaacctcaatgaagatgccttcgagtctgaggatggtgaagcaactgcagtctactgttatctaatgcgaagcagcatgaggaccctacctgattgcttggaatctgcaataacagagctcagaaagctcaatccatgtctaatggtgatcacagaaattgaagcaaatctctattcaccagtttttgaagaccgtttcaatgaagcggtcttctactatagtgcttattttgattgccttgatgtctgtatggataattccagtccatacaggagggaattggaagagacttttttggcgcgacagattacaaatattatagcaagtgaagaagagaggatattcaggcacatgaagattgatgtttggaggagtttgtttgcaaagtttggaatggtggaagcggagcttagcttgtcatcgttgtaccaagcagaccttactgctaagcaatttgcatgtgggaaatcatgcacattggatatgaatgggaaatgcctcaccattggatggaaaggaacaacaattctctctctttctgcttggaagttccatgcagcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

432

Amino Acids

48.52

Weight (kDa)

6.07

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06460
malus_domestica MD13G1155900.v1.1
prunus_persica Prupe.1G119200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0334751
rosa_laevigata RLG00000029425
rosa_multiflora Rmu_sc0000574.1_g000025 Rmu_sc0006031.1_g000013 Rmu_sc0015370.1_g000002
rosa_roxburghii Rroxscaffold_4G00316620
rosa_rugosa Rorug01G0115600
rosa_samantha Rh1AG140600 Rh1BG107700 Rh1CG132500 Rh1DG144600
rosa_wichuraiana Rw1G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 1245
AccI GTMKAC 1 cut(s) 786
AccII CGCG 1 cut(s) 1036
AciI CCGC 2 cut(s) 941, 1139
AclWI GGATC 2 cut(s) 463, 476
AcoI YGGCCR 1 cut(s) 498
AfaI GTAC 1 cut(s) 1163
AfiI CCNNNNNNNGG 2 cut(s) 663, 1245
AflIII ACRYGT 2 cut(s) 106, 342
AgsI TTSAA 3 cut(s) 896, 923, 934
AjiI CACGTC 1 cut(s) 345
AjnI CCWGG 1 cut(s) 141
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 8 cut(s) 182, 305, 566, 646, 853, 862, 1144, 1149
AluI AGCT 8 cut(s) 182, 305, 566, 646, 853, 862, 1144, 1149
Alw21I GWGCWC 2 cut(s) 124, 855
Alw26I GTCTC 2 cut(s) 137, 1016
AlwI GGATC 2 cut(s) 463, 476
AoxI GGCC 1 cut(s) 498
ApeKI GCWGC 2 cut(s) 807, 1292
AspA2I CCTAGG 1 cut(s) 127
AspLEI GCGC 1 cut(s) 1036
AspS9I GGNCC 1 cut(s) 816
AsuHPI GGTGA 4 cut(s) 782, 892, 903, 1228
AvaII GGWCC 1 cut(s) 816
AvrII CCTAGG 1 cut(s) 127
BamHI GGATCC 1 cut(s) 468
BanII GRGCYC 2 cut(s) 356, 855
BbsI GAAGAC 2 cut(s) 930, 937
Bbv12I GWGCWC 2 cut(s) 124, 855
BbvCI CCTCAGC 1 cut(s) 681
BbvI GCAGC 1 cut(s) 819
BccI CCATC 2 cut(s) 761, 1239
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 1 cut(s) 143
BclI TGATCA 1 cut(s) 882
BcoDI GTCTC 2 cut(s) 137, 1016
BfaI CTAG 2 cut(s) 128, 647
BfmI CTRYAG 5 cut(s) 27, 230, 612, 780, 952
BisI GCNGC 2 cut(s) 808, 1293
BlnI CCTAGG 1 cut(s) 127
BlpI GCTNAGC 2 cut(s) 1145, 1182
BlsI GCNGC 2 cut(s) 809, 1294
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 816
BmgBI CACGTC 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 816
BmiI GGNNCC 2 cut(s) 470, 818
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 6 cut(s) 503, 549, 588, 641, 738, 739
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 2 cut(s) 930, 937
Bpu10I CCTNAGC 1 cut(s) 681
Bpu1102I GCTNAGC 2 cut(s) 1145, 1182
BpuEI CTTGAG 1 cut(s) 545
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 127, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 663, 1245
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 4 cut(s) 268, 337, 914, 996
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 127, 348
BseGI GGATG 3 cut(s) 60, 772, 1250
BseLI CCNNNNNNNGG 2 cut(s) 663, 1245
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 7 cut(s) 150, 369, 470, 672, 686, 753, 868
BseNI ACTGG 4 cut(s) 268, 337, 914, 996
BseRI GAGGAG 1 cut(s) 1120
BseXI GCAGC 1 cut(s) 819
BseYI CCCAGC 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 1036
BshFI GGCC 1 cut(s) 500
BsiHKAI GWGCWC 2 cut(s) 124, 855
BsiSI CCGG 1 cut(s) 657
BslI CCNNNNNNNGG 2 cut(s) 663, 1245
BsmAI GTCTC 2 cut(s) 137, 1016
BsnI GGCC 1 cut(s) 500
Bso31I GGTCTC 1 cut(s) 137
Bsp1286I GDGCHC 3 cut(s) 124, 356, 855
Bsp143I GATC 4 cut(s) 214, 468, 528, 882
Bsp1720I GCTNAGC 2 cut(s) 1145, 1182
BspACI CCGC 2 cut(s) 941, 1139
BspANI GGCC 1 cut(s) 500
BspCNI CTCAG 7 cut(s) 149, 368, 469, 673, 685, 754, 867
BspFNI CGCG 1 cut(s) 1036
BspLI GGNNCC 2 cut(s) 470, 818
BspMAI CTGCAG 3 cut(s) 234, 616, 784
BspPI GGATC 2 cut(s) 463, 476
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 1 cut(s) 656
BsrI ACTGG 4 cut(s) 268, 337, 914, 996
BssAI RCCGGY 1 cut(s) 656
BssECI CCNNGG 2 cut(s) 127, 348
BssMI GATC 4 cut(s) 214, 468, 528, 882
BssT1I CCWWGG 2 cut(s) 127, 348
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 5 cut(s) 28, 274, 721, 791, 929
Bst6I CTCTTC 3 cut(s) 76, 1014, 1062
BstC8I GCNNGC 1 cut(s) 564
BstF5I GGATG 3 cut(s) 60, 772, 1250
BstFNI CGCG 1 cut(s) 1036
BstHHI GCGC 1 cut(s) 1036
BstKTI GATC 4 cut(s) 217, 471, 531, 885
BstMAI GTCTC 2 cut(s) 137, 1016
BstMBI GATC 4 cut(s) 214, 468, 528, 882
BstMWI GCNNNNNNNGC 3 cut(s) 419, 677, 859
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 2 cut(s) 110, 1197
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 5 cut(s) 27, 230, 612, 780, 952
BstUI CGCG 1 cut(s) 1036
BstV1I GCAGC 1 cut(s) 819
BstV2I GAAGAC 2 cut(s) 930, 937
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BsuRI GGCC 1 cut(s) 500
BtrI CACGTC 1 cut(s) 345
BtsCI GGATG 3 cut(s) 60, 772, 1250
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 2 cut(s) 261, 551
Cac8I GCNNGC 1 cut(s) 564
CfoI GCGC 1 cut(s) 1036
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 1 cut(s) 816
CseI GACGC 1 cut(s) 561
Csp6I GTAC 1 cut(s) 1162
CviAII CATG 7 cut(s) 107, 811, 870, 1087, 1194, 1206, 1289
CviQI GTAC 1 cut(s) 1162
DpnI GATC 4 cut(s) 216, 470, 530, 884
DpnII GATC 4 cut(s) 214, 468, 528, 882
DraI TTTAAA 1 cut(s) 709
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 498
Eam1104I CTCTTC 3 cut(s) 76, 1014, 1062
EarI CTCTTC 3 cut(s) 76, 1014, 1062
Ecl136II GAGCTC 1 cut(s) 853
Eco130I CCWWGG 2 cut(s) 127, 348
Eco24I GRGCYC 2 cut(s) 356, 855
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 816
Eco53kI GAGCTC 1 cut(s) 853
EcoICRI GAGCTC 1 cut(s) 853
EcoO109I RGGNCCY 1 cut(s) 816
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 2 cut(s) 127, 348
EcoT22I ATGCAT 1 cut(s) 384
EcoT38I GRGCYC 2 cut(s) 356, 855
ErhI CCWWGG 2 cut(s) 127, 348
FaeI CATG 7 cut(s) 110, 814, 873, 1090, 1197, 1209, 1292
FalI AAGNNNNNCTT 4 cut(s) 1128, 1160, 1158, 1190
FatI CATG 7 cut(s) 106, 810, 869, 1086, 1193, 1205, 1288
FbaI TGATCA 1 cut(s) 882
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 2 cut(s) 808, 1293
FokI GGATG 3 cut(s) 47, 779, 1257
FriOI GRGCYC 2 cut(s) 356, 855
Fsp4HI GCNGC 2 cut(s) 808, 1293
FspBI CTAG 2 cut(s) 128, 647
GlaI GCGC 1 cut(s) 1035
GluI GCNGC 2 cut(s) 808, 1293
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 1 cut(s) 500
HapII CCGG 1 cut(s) 657
HgaI GACGC 1 cut(s) 561
HhaI GCGC 1 cut(s) 1036
Hin1II CATG 7 cut(s) 110, 814, 873, 1090, 1197, 1209, 1292
Hin6I GCGC 1 cut(s) 1034
HinP1I GCGC 1 cut(s) 1034
HinfI GANTC 4 cut(s) 92, 235, 758, 836
HpaII CCGG 1 cut(s) 657
HphI GGTGA 4 cut(s) 782, 892, 903, 1228
Hpy166II GTNNAC 1 cut(s) 787
Hpy188I TCNGA 6 cut(s) 139, 279, 358, 533, 763, 857
Hpy188III TCNNGA 3 cut(s) 15, 576, 636
Hpy8I GTNNAC 1 cut(s) 787
HpyAV CCTTC 2 cut(s) 451, 763
HpyCH4III ACNGT 5 cut(s) 28, 274, 721, 791, 929
HpyCH4IV ACGT 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 677, 859
HpySE526I ACGT 1 cut(s) 344
Hsp92II CATG 7 cut(s) 110, 814, 873, 1090, 1197, 1209, 1292
HspAI GCGC 1 cut(s) 1034
Ksp22I TGATCA 1 cut(s) 882
Kzo9I GATC 4 cut(s) 214, 468, 528, 882
LmnI GCTCC 3 cut(s) 50, 127, 1141
Lsp1109I GCAGC 1 cut(s) 819
LweI GCATC 6 cut(s) 503, 549, 588, 641, 738, 739
MaeI CTAG 2 cut(s) 128, 647
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 3 cut(s) 451, 607, 721
MalI GATC 4 cut(s) 216, 470, 530, 884
MboI GATC 4 cut(s) 214, 468, 528, 882
MboII GAAGA 9 cut(s) 63, 246, 758, 935, 937, 1031, 1076, 1079, 1102
MfeI CAATTG 2 cut(s) 477, 591
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 3 cut(s) 124, 356, 855
MluCI AATT 8 cut(s) 65, 477, 591, 891, 991, 1013, 1187, 1260
MlyI GAGTC 2 cut(s) 86, 767
MmeI TCCRAC 2 cut(s) 178, 598
Mph1103I ATGCAT 1 cut(s) 384
MseI TTAA 1 cut(s) 708
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 2 cut(s) 477, 591
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 1036
MwoI GCNNNNNNNGC 3 cut(s) 419, 677, 859
NdeII GATC 4 cut(s) 214, 468, 528, 882
NlaIII CATG 7 cut(s) 110, 814, 873, 1090, 1197, 1209, 1292
NlaIV GGNNCC 2 cut(s) 470, 818
NsiI ATGCAT 1 cut(s) 384
NspI RCATGY 2 cut(s) 110, 1197
PciI ACATGT 1 cut(s) 106
PfeI GAWTC 2 cut(s) 235, 836
PflMI CCANNNNNTGG 1 cut(s) 1245
PkrI GCNGC 2 cut(s) 809, 1294
PleI GAGTC 2 cut(s) 86, 766
PpsI GAGTC 2 cut(s) 86, 766
PpuMI RGGWCCY 1 cut(s) 816
PscI ACATGT 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 816
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 470, 818
PspPI GGNCC 1 cut(s) 816
PspPPI RGGWCCY 1 cut(s) 816
PstI CTGCAG 3 cut(s) 234, 616, 784
PsuI RGATCY 1 cut(s) 468
RsaI GTAC 1 cut(s) 1163
RsaNI GTAC 1 cut(s) 1162
SacI GAGCTC 1 cut(s) 855
SaqAI TTAA 1 cut(s) 708
SatI GCNGC 2 cut(s) 808, 1293
Sau3AI GATC 4 cut(s) 214, 468, 528, 882
Sau96I GGNCC 1 cut(s) 816
SchI GAGTC 2 cut(s) 86, 767
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 3 cut(s) 124, 356, 855
SfaNI GCATC 6 cut(s) 503, 549, 588, 641, 738, 739
SfcI CTRYAG 5 cut(s) 27, 230, 612, 780, 952
SinI GGWCC 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 8 cut(s) 65, 477, 591, 891, 991, 1013, 1187, 1260
SsiI CCGC 2 cut(s) 941, 1139
SspI AATATT 1 cut(s) 1051
SspMI CTAG 2 cut(s) 128, 647
SstI GAGCTC 1 cut(s) 855
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 2 cut(s) 127, 348
TaaI ACNGT 5 cut(s) 28, 274, 721, 791, 929
TaiI ACGT 1 cut(s) 347
TaqI TCGA 1 cut(s) 756
TasI AATT 8 cut(s) 65, 477, 591, 891, 991, 1013, 1187, 1260
TfiI GAWTC 2 cut(s) 235, 836
Tru1I TTAA 1 cut(s) 708
Tru9I TTAA 1 cut(s) 708
TscAI CASTG 2 cut(s) 268, 551
TseI GCWGC 2 cut(s) 807, 1292
TspDTI ATGAA 8 cut(s) 49, 500, 505, 597, 759, 951, 1103, 1235
TspRI CASTG 2 cut(s) 268, 551
Van91I CCANNNNNTGG 1 cut(s) 1245
VpaK11BI GGWCC 1 cut(s) 816
XceI RCATGY 2 cut(s) 110, 1197
XmaJI CCTAGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 786
XspI CTAG 2 cut(s) 128, 647
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.