Rh1CG132500

DELLA protein GAI1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016384
Physical Location & Seq
Reverse (-)
29116499 .. 29119152
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG132500.1

Sequence Viewer

Length: 1263 bp
ATGAGAGCAGCAGGAGCAAGGTTCATCCAATTCTCTTCCCAAAAGTATGCCGATGACTCCATACCTAAACATGTTTTAGGCTGTGCTCCCATAGGTCTCTCAGACCAGGAAGTCAAAGAGGTTGAGCTTGCACACCTTCTTTTAGCTTTTGCAGATAAGGTTGGAAAGCAACAATATGATAGGGCGAGAAAACTGCAGAATCTATGCCATTTCCTATCTTCCAGCACTGGAAATACTGTTCAGAGAGTTGTTTATTATTTTTCTAAAGCTCTTCGAGAAAGGACAGATAGGGAAACTGGGAGAAACACGTCTAAGGGCTCAGAAAGTAAGGATTTACTTGCAATGCATTTAGAAAAGACAATTGCTTGTTGTCCTGCTTTCTTTGCTTGTTTCCTCAAACTTCCCTTCTATCAAGTAACTCAGTTTGCCGGGATCCAAGCAATTGTGGAAAGTGTAGCATCGGCCAAAAGAGTTCATTTCATTGACCTTGAGATCAGAAGTGGGGGGCACTGCATAGTGTTGATGCAAGCTCTTGCGTCAAGATGTGAACAACCAATTGAGATGCTAAAAGTTACTGCAGTTGGAAGTGGAACTGCATCAAGACAAAAGCTAGAGGACACCGGCAAAAGGTTGGCTCAGTTTGCTGAGGCATTACATTTGCCCTTTTCATTTAAAATAGCAACGGTTACAGACATCAACAACCTCAATGAAGATGCCTTCGAGTCTGAGGATGGTGAAGCAACTGCAGTCTACTGTTGTCTAATGCGAAGCAGCATGAGGACCCTACCTGATTGCTTGGAATCTGCAATAACAGAGCTCAGAAAGCTCAATCCATGTCTAATGGTGATCACAGAAATCGAAGCAAATCTCTATTCACCAGTTTTTGAAGACCGTTTCAATGCAGCGGTCTTCTACTATAGTGCTTATTTTGATTGCCTTGATGTCTGTATGGATAATTCCAGTCCATACAGGAGGGAATTGGAAGAGACTTTTTTGGCGCAACAGATTACAAATATTATAGCAAGTGAAGAAGAGAGGAAATTCAGGCACATGAAGATTGATGTTTGGAGGAGTTTGTTTGCAAAGTTTGGAATGGTGGAAGAGGAGCTTAGCTTGTCATCGTTGTACCAAGCAGACCTTACTGCTAAGCAATTTGCATGTGGGAAATCATGCACATTGGATATGAATGGGAAATGCCTCACCATTGGATGGAAAGGAACAACAATTCTCTCTCTTTCTTCTTGGAAGTTCCATGCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

420

Amino Acids

47.15

Weight (kDa)

6.34

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 44 - 416 3.2e-74 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06460
malus_domestica MD13G1155900.v1.1
prunus_persica Prupe.1G119200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0334751
rosa_laevigata RLG00000029425
rosa_multiflora Rmu_sc0000574.1_g000025 Rmu_sc0006031.1_g000013 Rmu_sc0015370.1_g000002
rosa_roxburghii Rroxscaffold_4G00316620
rosa_rugosa Rorug01G0115600
rosa_samantha Rh1AG140600 Rh1BG107700 Rh1CG132500 Rh1DG144600
rosa_wichuraiana Rw1G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 1209
AccI GTMKAC 1 cut(s) 750
AciI CCGC 1 cut(s) 905
AclWI GGATC 2 cut(s) 427, 440
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 1040
AfaI GTAC 1 cut(s) 1127
AfiI CCNNNNNNNGG 2 cut(s) 627, 1209
AflIII ACRYGT 2 cut(s) 70, 306
AgsI TTSAA 2 cut(s) 887, 898
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 1 cut(s) 105
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 9 cut(s) 127, 146, 269, 530, 610, 817, 826, 1108, 1113
AluI AGCT 9 cut(s) 127, 146, 269, 530, 610, 817, 826, 1108, 1113
Alw21I GWGCWC 2 cut(s) 88, 819
Alw26I GTCTC 2 cut(s) 101, 980
AlwI GGATC 2 cut(s) 427, 440
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 4 cut(s) 8, 771, 902, 1256
ApoI RAATTY 1 cut(s) 1040
AspLEI GCGC 1 cut(s) 1000
AspS9I GGNCC 1 cut(s) 780
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 4 cut(s) 746, 856, 867, 1192
AvaII GGWCC 1 cut(s) 780
BaeGI GKGCMC 1 cut(s) 510
BamHI GGATCC 1 cut(s) 432
BanII GRGCYC 2 cut(s) 320, 819
BbsI GAAGAC 2 cut(s) 894, 901
Bbv12I GWGCWC 2 cut(s) 88, 819
BbvCI CCTCAGC 1 cut(s) 645
BbvI GCAGC 3 cut(s) 20, 783, 914
BccI CCATC 2 cut(s) 725, 1203
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 1 cut(s) 107
BclI TGATCA 1 cut(s) 846
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 2 cut(s) 101, 980
BfaI CTAG 1 cut(s) 611
BfmI CTRYAG 4 cut(s) 194, 576, 744, 916
BisI GCNGC 4 cut(s) 9, 772, 903, 1257
BlpI GCTNAGC 2 cut(s) 1109, 1146
BlsI GCNGC 4 cut(s) 10, 773, 904, 1258
Bme1390I CCNGG 2 cut(s) 107, 430
Bme18I GGWCC 1 cut(s) 780
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 780
BmiI GGNNCC 2 cut(s) 434, 782
BmrFI CCNGG 2 cut(s) 107, 430
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 5 cut(s) 467, 513, 552, 605, 703
BmuI ACTGGG 1 cut(s) 306
BpiI GAAGAC 2 cut(s) 894, 901
Bpu10I CCTNAGC 1 cut(s) 645
Bpu1102I GCTNAGC 2 cut(s) 1109, 1146
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 430
BsaI GGTCTC 1 cut(s) 101
Bsc4I CCNNNNNNNGG 2 cut(s) 627, 1209
Bse118I RCCGGY 1 cut(s) 620
Bse1I ACTGG 4 cut(s) 232, 301, 878, 960
Bse3DI GCAATG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 107
BseGI GGATG 3 cut(s) 24, 736, 1214
BseLI CCNNNNNNNGG 2 cut(s) 627, 1209
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 7 cut(s) 114, 333, 434, 636, 650, 717, 832
BseNI ACTGG 4 cut(s) 232, 301, 878, 960
BseRI GAGGAG 2 cut(s) 1084, 1118
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 3 cut(s) 20, 783, 914
BshFI GGCC 1 cut(s) 464
BsiHKAI GWGCWC 2 cut(s) 88, 819
BsiSI CCGG 2 cut(s) 429, 621
BslI CCNNNNNNNGG 2 cut(s) 627, 1209
BsmAI GTCTC 2 cut(s) 101, 980
BsnI GGCC 1 cut(s) 464
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 4 cut(s) 88, 320, 510, 819
Bsp143I GATC 3 cut(s) 432, 492, 846
Bsp1720I GCTNAGC 2 cut(s) 1109, 1146
BspACI CCGC 1 cut(s) 905
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 7 cut(s) 113, 332, 433, 637, 649, 718, 831
BspLI GGNNCC 2 cut(s) 434, 782
BspMAI CTGCAG 3 cut(s) 198, 580, 748
BspPI GGATC 2 cut(s) 427, 440
BspQI GCTCTTC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 348
BsrFI RCCGGY 1 cut(s) 620
BsrI ACTGG 4 cut(s) 232, 301, 878, 960
BssAI RCCGGY 1 cut(s) 620
BssMI GATC 3 cut(s) 432, 492, 846
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 4 cut(s) 238, 685, 755, 893
Bst6I CTCTTC 5 cut(s) 40, 276, 978, 1026, 1095
BstC8I GCNNGC 2 cut(s) 129, 528
BstF5I GGATG 3 cut(s) 24, 736, 1214
BstHHI GCGC 1 cut(s) 1000
BstKTI GATC 3 cut(s) 435, 495, 849
BstMAI GTCTC 2 cut(s) 101, 980
BstMBI GATC 3 cut(s) 432, 492, 846
BstMWI GCNNNNNNNGC 4 cut(s) 14, 383, 641, 823
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 2 cut(s) 74, 1161
BstSCI CCNGG 2 cut(s) 105, 428
BstSFI CTRYAG 4 cut(s) 194, 576, 744, 916
BstSLI GKGCMC 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 20, 783, 914
BstV2I GAAGAC 2 cut(s) 894, 901
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 1 cut(s) 464
BtrI CACGTC 1 cut(s) 309
BtsCI GGATG 3 cut(s) 24, 736, 1214
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 2 cut(s) 225, 508
Cac8I GCNNGC 2 cut(s) 129, 528
CfoI GCGC 1 cut(s) 1000
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 1 cut(s) 780
CseI GACGC 1 cut(s) 525
Csp6I GTAC 1 cut(s) 1126
CviAII CATG 7 cut(s) 71, 775, 834, 1051, 1158, 1170, 1253
CviQI GTAC 1 cut(s) 1126
DpnI GATC 3 cut(s) 434, 494, 848
DpnII GATC 3 cut(s) 432, 492, 846
DraI TTTAAA 1 cut(s) 673
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 5 cut(s) 40, 276, 978, 1026, 1095
EarI CTCTTC 5 cut(s) 40, 276, 978, 1026, 1095
Ecl136II GAGCTC 1 cut(s) 817
Eco24I GRGCYC 2 cut(s) 320, 819
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 780
Eco53kI GAGCTC 1 cut(s) 817
EcoICRI GAGCTC 1 cut(s) 817
EcoO109I RGGNCCY 1 cut(s) 780
EcoRII CCWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 348
EcoT38I GRGCYC 2 cut(s) 320, 819
FaeI CATG 7 cut(s) 74, 778, 837, 1054, 1161, 1173, 1256
FalI AAGNNNNNCTT 4 cut(s) 1092, 1124, 1122, 1154
FatI CATG 7 cut(s) 70, 774, 833, 1050, 1157, 1169, 1252
FbaI TGATCA 1 cut(s) 846
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 4 cut(s) 9, 772, 903, 1257
FokI GGATG 3 cut(s) 11, 743, 1221
FriOI GRGCYC 2 cut(s) 320, 819
Fsp4HI GCNGC 4 cut(s) 9, 772, 903, 1257
FspBI CTAG 1 cut(s) 611
GlaI GCGC 1 cut(s) 999
GluI GCNGC 4 cut(s) 9, 772, 903, 1257
HaeIII GGCC 1 cut(s) 464
HapII CCGG 2 cut(s) 429, 621
HgaI GACGC 1 cut(s) 525
HhaI GCGC 1 cut(s) 1000
Hin1II CATG 7 cut(s) 74, 778, 837, 1054, 1161, 1173, 1256
Hin6I GCGC 1 cut(s) 998
HinP1I GCGC 1 cut(s) 998
HinfI GANTC 4 cut(s) 56, 199, 722, 800
HpaII CCGG 2 cut(s) 429, 621
HphI GGTGA 4 cut(s) 746, 856, 867, 1192
Hpy166II GTNNAC 2 cut(s) 548, 751
Hpy188I TCNGA 6 cut(s) 103, 243, 322, 497, 727, 821
Hpy188III TCNNGA 3 cut(s) 275, 540, 600
Hpy8I GTNNAC 2 cut(s) 548, 751
HpyAV CCTTC 3 cut(s) 146, 415, 727
HpyCH4III ACNGT 4 cut(s) 238, 685, 755, 893
HpyCH4IV ACGT 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 383, 641, 823
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 7 cut(s) 74, 778, 837, 1054, 1161, 1173, 1256
HspAI GCGC 1 cut(s) 998
Ksp22I TGATCA 1 cut(s) 846
Kzo9I GATC 3 cut(s) 432, 492, 846
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 3 cut(s) 14, 91, 1105
Lsp1109I GCAGC 3 cut(s) 20, 783, 914
LweI GCATC 5 cut(s) 467, 513, 552, 605, 703
MaeI CTAG 1 cut(s) 611
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 3 cut(s) 415, 571, 685
MalI GATC 3 cut(s) 434, 494, 848
MboI GATC 3 cut(s) 432, 492, 846
MfeI CAATTG 3 cut(s) 360, 441, 555
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 4 cut(s) 88, 320, 510, 819
MluCI AATT 9 cut(s) 29, 360, 441, 555, 955, 977, 1040, 1151, 1224
MlyI GAGTC 2 cut(s) 50, 731
MmeI TCCRAC 2 cut(s) 142, 562
Mph1103I ATGCAT 1 cut(s) 348
MseI TTAA 1 cut(s) 672
MspA1I CMGCKG 1 cut(s) 905
MspI CCGG 2 cut(s) 429, 621
MspR9I CCNGG 2 cut(s) 107, 430
MunI CAATTG 3 cut(s) 360, 441, 555
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 4 cut(s) 14, 383, 641, 823
NciI CCSGG 1 cut(s) 430
NdeII GATC 3 cut(s) 432, 492, 846
NlaIII CATG 7 cut(s) 74, 778, 837, 1054, 1161, 1173, 1256
NlaIV GGNNCC 2 cut(s) 434, 782
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 2 cut(s) 74, 1161
PciI ACATGT 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 199, 800
PflMI CCANNNNNTGG 1 cut(s) 1209
PkrI GCNGC 4 cut(s) 10, 773, 904, 1258
PleI GAGTC 2 cut(s) 50, 730
PpsI GAGTC 2 cut(s) 50, 730
PpuMI RGGWCCY 1 cut(s) 780
PscI ACATGT 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 819
Psp5II RGGWCCY 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 434, 782
PspPI GGNCC 1 cut(s) 780
PspPPI RGGWCCY 1 cut(s) 780
PstI CTGCAG 3 cut(s) 198, 580, 748
PsuI RGATCY 1 cut(s) 432
RsaI GTAC 1 cut(s) 1127
RsaNI GTAC 1 cut(s) 1126
SacI GAGCTC 1 cut(s) 819
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 4 cut(s) 9, 772, 903, 1257
Sau3AI GATC 3 cut(s) 432, 492, 846
Sau96I GGNCC 1 cut(s) 780
SchI GAGTC 2 cut(s) 50, 731
ScrFI CCNGG 2 cut(s) 107, 430
SduI GDGCHC 4 cut(s) 88, 320, 510, 819
SfaNI GCATC 5 cut(s) 467, 513, 552, 605, 703
SfcI CTRYAG 4 cut(s) 194, 576, 744, 916
SinI GGWCC 1 cut(s) 780
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 9 cut(s) 29, 360, 441, 555, 955, 977, 1040, 1151, 1224
SsiI CCGC 1 cut(s) 905
SspI AATATT 1 cut(s) 1015
SspMI CTAG 1 cut(s) 611
SstI GAGCTC 1 cut(s) 819
StyD4I CCNGG 2 cut(s) 105, 428
TaaI ACNGT 4 cut(s) 238, 685, 755, 893
TaiI ACGT 1 cut(s) 311
TaqI TCGA 3 cut(s) 274, 720, 858
TasI AATT 9 cut(s) 29, 360, 441, 555, 955, 977, 1040, 1151, 1224
TfiI GAWTC 2 cut(s) 199, 800
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 2 cut(s) 232, 515
TseI GCWGC 4 cut(s) 8, 771, 902, 1256
TspDTI ATGAA 7 cut(s) 13, 464, 469, 657, 723, 1067, 1199
TspRI CASTG 2 cut(s) 232, 515
Van91I CCANNNNNTGG 1 cut(s) 1209
VpaK11BI GGWCC 1 cut(s) 780
XapI RAATTY 1 cut(s) 1040
XceI RCATGY 2 cut(s) 74, 1161
XmiI GTMKAC 1 cut(s) 750
XspI CTAG 1 cut(s) 611
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.