RLG00000029425

DELLA protein GAI1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016384
Physical Location & Seq
Forward (+)
38636823 .. 38639401
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029425

Sequence Viewer

Length: 1341 bp
ATGAGAGTAGCAGGAGCAAGGTTCATCCAATTCTCTTCCCAAAAGTATGCCGATGACTCCATACCTAAACATGTTTTAGGCTGTGCTCCCATAGGTCTCTCAGACCAGGAAGTCAAAGACGTTGAGCTTGCACACCTTCTTTTAGCTTTTGCAGATAAGGTTGGAAAGCAACAATATGATAGGGCGAGAAAACTGCAGAATCTATGCCATTTCCTATCTTCCAGCACTGGAAATACTGTTCAGAGAGTTGTTTATTATTTTTCAAAAGCTCTTCAAGAAAGGACAGATAGGGAAAATGGGAGAGACACATCTAAGCGCTCAGAAAGTAAGGATTTATTTGCAATGCATTTAGAAAAGACACTAGCTTGTTGTCCTACTTTCTTTGCTTGTTTCCTTGAACTTCCCTTCTATCAAGTACAGGGGCGGATCCAGCCACAGGCTGGGAAGTTCAAGCCCCACCGAGCTTGTAATCCTGGATCCGCCCCTGATCAAGTAACTCAGTTTGCCGGGATCCAAGCAATTGTGGAAAGTGTAGCATCGGCCAAAAGAGTTCATTTCATTGACCTTGAGATCAGAAGTGGGGGGCACTGCATAGTGTTGATGCAAGCTCTTGCGTCAAGATATGAACAACCAATTGAGTTGCTAAAAGTTACTGCAGTTGGAAGTGGAACTGCATCAAGACAAAAGCTAGAGGACACCGGCAAAAGGTTGGCTCAGTTTGCTGAGGCATTACATCTGCCCTTTTCCTTTAAAATAGCAACGGTTACAGACATCAACAACCTCAATGAAGATGCCTTCGAGTCTGAGGATGGTGAAGCAACTGCTGTCTACTGTTGTCTAATGCGAAGCAGCATGAGGACCCTACCTGAATGCTTGGAATCTGCAATAACAGAGCTCAGAAAGCTCAATCCATGTCTAATGGTGATCACAGAAATCGAAGCAAATCTCTATTCACCAGTTTTTGAAGACCGTTTCAATGAAGCGGTCTTCTACTATAGTGCTTATTTTGATTGCCTTGATGTCTGTATGGATAATTCCAGTCCATACAGGAGGGAATTGGAAGAGACTTTTTTGGCGCAACAGATTACAAATATTATAGCAAGTGAAGAAGAGAGGATATTCAGGCACATGAAGATTGATGTTTGGAGGAGTTTGTTTGCAAAGTTTGGAATGGTGGAAGTGGAGCTTAGCTTGTCATCGTTGTACCAAGCAGACCTTACTGCTAAGCAATTTGCATGTGGGAAATCATGCACATTGGATATGAATGGGAAATGCCTCACCATTGGATGGAAAGGAACAAGAATTCTCTCTCTTTCTGCTTGGAAGTTCCATGCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

447

Amino Acids

50.2

Weight (kDa)

6.39

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 44 - 127 5.6e-06 GRAS domain family
GRAS PF03514 166 - 442 7e-64 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016384)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06460
malus_domestica MD13G1155900.v1.1
prunus_persica Prupe.1G119200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0334751
rosa_laevigata RLG00000029425
rosa_multiflora Rmu_sc0000574.1_g000025 Rmu_sc0006031.1_g000013 Rmu_sc0015370.1_g000002
rosa_roxburghii Rroxscaffold_4G00316620
rosa_rugosa Rorug01G0115600
rosa_samantha Rh1AG140600 Rh1BG107700 Rh1CG132500 Rh1DG144600
rosa_wichuraiana Rw1G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccB7I CCANNNNNTGG 2 cut(s) 440, 1287
AccI GTMKAC 1 cut(s) 828
AciI CCGC 3 cut(s) 424, 480, 983
AclWI GGATC 6 cut(s) 421, 434, 471, 484, 505, 518
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 1302
AfaI GTAC 2 cut(s) 417, 1205
AfeI AGCGCT 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 436, 440, 705, 1287
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 6 cut(s) 264, 275, 398, 451, 965, 976
AjnI CCWGG 2 cut(s) 105, 472
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
Alw21I GWGCWC 2 cut(s) 88, 897
Alw26I GTCTC 3 cut(s) 101, 297, 1058
AlwI GGATC 6 cut(s) 421, 434, 471, 484, 505, 518
Aor51HI AGCGCT 1 cut(s) 317
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 2 cut(s) 849, 1334
ApoI RAATTY 1 cut(s) 1302
AspLEI GCGC 2 cut(s) 318, 1078
AspS9I GGNCC 1 cut(s) 858
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 4 cut(s) 824, 934, 945, 1270
AvaII GGWCC 1 cut(s) 858
BaeGI GKGCMC 1 cut(s) 588
BamHI GGATCC 3 cut(s) 426, 476, 510
BanII GRGCYC 1 cut(s) 897
BbsI GAAGAC 2 cut(s) 972, 979
Bbv12I GWGCWC 2 cut(s) 88, 897
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 1 cut(s) 861
BccI CCATC 2 cut(s) 803, 1281
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 2 cut(s) 107, 474
BclI TGATCA 2 cut(s) 487, 924
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 3 cut(s) 101, 297, 1058
BfaI CTAG 2 cut(s) 362, 689
BfmI CTRYAG 3 cut(s) 194, 654, 994
BfoI RGCGCY 1 cut(s) 319
BisI GCNGC 2 cut(s) 850, 1335
BlpI GCTNAGC 2 cut(s) 1187, 1224
BlsI GCNGC 2 cut(s) 851, 1336
Bme1390I CCNGG 3 cut(s) 107, 474, 508
Bme18I GGWCC 1 cut(s) 858
BmgT120I GGNCC 1 cut(s) 858
BmiI GGNNCC 4 cut(s) 428, 478, 512, 860
BmrFI CCNGG 3 cut(s) 107, 474, 508
BmsI GCATC 4 cut(s) 545, 591, 683, 781
BpiI GAAGAC 2 cut(s) 972, 979
Bpu10I CCTNAGC 1 cut(s) 723
Bpu1102I GCTNAGC 2 cut(s) 1187, 1224
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 508
BsaI GGTCTC 1 cut(s) 101
Bsc4I CCNNNNNNNGG 4 cut(s) 436, 440, 705, 1287
Bse118I RCCGGY 1 cut(s) 698
Bse1I ACTGG 3 cut(s) 232, 956, 1038
Bse3DI GCAATG 1 cut(s) 348
BseBI CCWGG 2 cut(s) 107, 474
BseGI GGATG 3 cut(s) 24, 814, 1292
BseLI CCNNNNNNNGG 4 cut(s) 436, 440, 705, 1287
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 7 cut(s) 114, 333, 512, 714, 728, 795, 910
BseNI ACTGG 3 cut(s) 232, 956, 1038
BseRI GAGGAG 1 cut(s) 1162
BseSI GKGCMC 1 cut(s) 588
BseXI GCAGC 1 cut(s) 861
BseYI CCCAGC 1 cut(s) 440
BshFI GGCC 1 cut(s) 542
BsiHKAI GWGCWC 2 cut(s) 88, 897
BsiSI CCGG 2 cut(s) 507, 699
BslI CCNNNNNNNGG 4 cut(s) 436, 440, 705, 1287
BsmAI GTCTC 3 cut(s) 101, 297, 1058
BsmI GAATGC 1 cut(s) 875
BsnI GGCC 1 cut(s) 542
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 3 cut(s) 88, 588, 897
Bsp143I GATC 6 cut(s) 426, 476, 487, 510, 570, 924
Bsp1720I GCTNAGC 2 cut(s) 1187, 1224
BspACI CCGC 3 cut(s) 424, 480, 983
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 7 cut(s) 113, 332, 511, 715, 727, 796, 909
BspLI GGNNCC 4 cut(s) 428, 478, 512, 860
BspMAI CTGCAG 2 cut(s) 198, 658
BspPI GGATC 6 cut(s) 421, 434, 471, 484, 505, 518
BspQI GCTCTTC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 348
BsrFI RCCGGY 1 cut(s) 698
BsrI ACTGG 3 cut(s) 232, 956, 1038
BssAI RCCGGY 1 cut(s) 698
BssMI GATC 6 cut(s) 426, 476, 487, 510, 570, 924
Bst2UI CCWGG 2 cut(s) 107, 474
Bst4CI ACNGT 4 cut(s) 238, 763, 833, 971
Bst6I CTCTTC 4 cut(s) 40, 276, 1056, 1104
BstC8I GCNNGC 2 cut(s) 129, 606
BstF5I GGATG 3 cut(s) 24, 814, 1292
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 2 cut(s) 318, 1078
BstKTI GATC 6 cut(s) 429, 479, 490, 513, 573, 927
BstMAI GTCTC 3 cut(s) 101, 297, 1058
BstMBI GATC 6 cut(s) 426, 476, 487, 510, 570, 924
BstMWI GCNNNNNNNGC 3 cut(s) 430, 719, 901
BstNI CCWGG 2 cut(s) 107, 474
BstNSI RCATGY 2 cut(s) 74, 1239
BstSCI CCNGG 3 cut(s) 105, 472, 506
BstSFI CTRYAG 3 cut(s) 194, 654, 994
BstSLI GKGCMC 1 cut(s) 588
BstV1I GCAGC 1 cut(s) 861
BstV2I GAAGAC 2 cut(s) 972, 979
BstX2I RGATCY 3 cut(s) 426, 476, 510
BstYI RGATCY 3 cut(s) 426, 476, 510
BsuRI GGCC 1 cut(s) 542
BtsCI GGATG 3 cut(s) 24, 814, 1292
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 2 cut(s) 225, 586
Cac8I GCNNGC 2 cut(s) 129, 606
CfoI GCGC 2 cut(s) 318, 1078
Cfr10I RCCGGY 1 cut(s) 698
Cfr13I GGNCC 1 cut(s) 858
CseI GACGC 1 cut(s) 603
Csp6I GTAC 2 cut(s) 416, 1204
CspCI CAANNNNNGTGG 2 cut(s) 446, 481
CviAII CATG 7 cut(s) 71, 853, 912, 1129, 1236, 1248, 1331
CviQI GTAC 2 cut(s) 416, 1204
DpnI GATC 6 cut(s) 428, 478, 489, 512, 572, 926
DpnII GATC 6 cut(s) 426, 476, 487, 510, 570, 924
DraI TTTAAA 1 cut(s) 751
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 4 cut(s) 40, 276, 1056, 1104
EarI CTCTTC 4 cut(s) 40, 276, 1056, 1104
EciI GGCGGA 2 cut(s) 439, 469
Ecl136II GAGCTC 1 cut(s) 895
Eco24I GRGCYC 1 cut(s) 897
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 858
Eco47III AGCGCT 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 895
EcoICRI GAGCTC 1 cut(s) 895
EcoO109I RGGNCCY 1 cut(s) 858
EcoRI GAATTC 1 cut(s) 1302
EcoRII CCWGG 2 cut(s) 105, 472
EcoT22I ATGCAT 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 897
FaeI CATG 7 cut(s) 74, 856, 915, 1132, 1239, 1251, 1334
FalI AAGNNNNNCTT 4 cut(s) 1170, 1202, 1200, 1232
FatI CATG 7 cut(s) 70, 852, 911, 1128, 1235, 1247, 1330
FbaI TGATCA 2 cut(s) 487, 924
FblI GTMKAC 1 cut(s) 828
Fnu4HI GCNGC 2 cut(s) 850, 1335
FokI GGATG 3 cut(s) 11, 821, 1299
FriOI GRGCYC 1 cut(s) 897
Fsp4HI GCNGC 2 cut(s) 850, 1335
FspBI CTAG 2 cut(s) 362, 689
GlaI GCGC 2 cut(s) 317, 1077
GluI GCNGC 2 cut(s) 850, 1335
GsaI CCCAGC 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 1 cut(s) 542
HapII CCGG 2 cut(s) 507, 699
HgaI GACGC 1 cut(s) 603
HhaI GCGC 2 cut(s) 318, 1078
Hin1II CATG 7 cut(s) 74, 856, 915, 1132, 1239, 1251, 1334
Hin6I GCGC 2 cut(s) 316, 1076
HinP1I GCGC 2 cut(s) 316, 1076
HinfI GANTC 4 cut(s) 56, 199, 800, 878
HpaII CCGG 2 cut(s) 507, 699
HphI GGTGA 4 cut(s) 824, 934, 945, 1270
Hpy166II GTNNAC 1 cut(s) 829
Hpy188I TCNGA 6 cut(s) 103, 243, 322, 575, 805, 899
Hpy188III TCNNGA 3 cut(s) 275, 618, 678
Hpy8I GTNNAC 1 cut(s) 829
HpyAV CCTTC 3 cut(s) 146, 415, 805
HpyCH4III ACNGT 4 cut(s) 238, 763, 833, 971
HpyCH4IV ACGT 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 3 cut(s) 430, 719, 901
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 7 cut(s) 74, 856, 915, 1132, 1239, 1251, 1334
HspAI GCGC 2 cut(s) 316, 1076
Ksp22I TGATCA 2 cut(s) 487, 924
Kzo9I GATC 6 cut(s) 426, 476, 487, 510, 570, 924
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 3 cut(s) 14, 91, 1183
Lsp1109I GCAGC 1 cut(s) 861
LweI GCATC 4 cut(s) 545, 591, 683, 781
MaeI CTAG 2 cut(s) 362, 689
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 3 cut(s) 493, 649, 763
MalI GATC 6 cut(s) 428, 478, 489, 512, 572, 926
MboI GATC 6 cut(s) 426, 476, 487, 510, 570, 924
MfeI CAATTG 2 cut(s) 519, 633
MflI RGATCY 3 cut(s) 426, 476, 510
MhlI GDGCHC 3 cut(s) 88, 588, 897
MluCI AATT 7 cut(s) 29, 519, 633, 1033, 1055, 1229, 1302
MlyI GAGTC 2 cut(s) 50, 809
MmeI TCCRAC 2 cut(s) 142, 640
MnlI CCTC 9 cut(s) 685, 718, 791, 799, 849, 1044, 1107, 1140, 1286
Mph1103I ATGCAT 1 cut(s) 348
MseI TTAA 1 cut(s) 750
MspI CCGG 2 cut(s) 507, 699
MspR9I CCNGG 3 cut(s) 107, 474, 508
MunI CAATTG 2 cut(s) 519, 633
Mva1269I GAATGC 1 cut(s) 875
MvaI CCWGG 2 cut(s) 107, 474
MwoI GCNNNNNNNGC 3 cut(s) 430, 719, 901
NciI CCSGG 1 cut(s) 508
NdeII GATC 6 cut(s) 426, 476, 487, 510, 570, 924
NlaIII CATG 7 cut(s) 74, 856, 915, 1132, 1239, 1251, 1334
NlaIV GGNNCC 4 cut(s) 428, 478, 512, 860
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 2 cut(s) 74, 1239
PciI ACATGT 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 276
PctI GAATGC 1 cut(s) 875
PfeI GAWTC 2 cut(s) 199, 878
PflMI CCANNNNNTGG 2 cut(s) 440, 1287
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 2 cut(s) 851, 1336
PleI GAGTC 2 cut(s) 50, 808
PpsI GAGTC 2 cut(s) 50, 808
PpuMI RGGWCCY 1 cut(s) 858
PscI ACATGT 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 897
Psp5II RGGWCCY 1 cut(s) 858
Psp6I CCWGG 2 cut(s) 105, 472
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 2 cut(s) 105, 472
PspN4I GGNNCC 4 cut(s) 428, 478, 512, 860
PspPI GGNCC 1 cut(s) 858
PspPPI RGGWCCY 1 cut(s) 858
PstI CTGCAG 2 cut(s) 198, 658
PsuI RGATCY 3 cut(s) 426, 476, 510
RsaI GTAC 2 cut(s) 417, 1205
RsaNI GTAC 2 cut(s) 416, 1204
SacI GAGCTC 1 cut(s) 897
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 2 cut(s) 850, 1335
Sau3AI GATC 6 cut(s) 426, 476, 487, 510, 570, 924
Sau96I GGNCC 1 cut(s) 858
SchI GAGTC 2 cut(s) 50, 809
ScrFI CCNGG 3 cut(s) 107, 474, 508
SduI GDGCHC 3 cut(s) 88, 588, 897
SfaNI GCATC 4 cut(s) 545, 591, 683, 781
SfcI CTRYAG 3 cut(s) 194, 654, 994
SinI GGWCC 1 cut(s) 858
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 7 cut(s) 29, 519, 633, 1033, 1055, 1229, 1302
SsiI CCGC 3 cut(s) 424, 480, 983
SspI AATATT 1 cut(s) 1093
SspMI CTAG 2 cut(s) 362, 689
SstI GAGCTC 1 cut(s) 897
StyD4I CCNGG 3 cut(s) 105, 472, 506
TaaI ACNGT 4 cut(s) 238, 763, 833, 971
TaiI ACGT 1 cut(s) 123
TaqI TCGA 2 cut(s) 798, 936
TasI AATT 7 cut(s) 29, 519, 633, 1033, 1055, 1229, 1302
TatI WGTACW 1 cut(s) 415
TfiI GAWTC 2 cut(s) 199, 878
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TscAI CASTG 2 cut(s) 232, 593
TseI GCWGC 2 cut(s) 849, 1334
TspDTI ATGAA 8 cut(s) 13, 542, 547, 639, 801, 993, 1145, 1277
TspRI CASTG 2 cut(s) 232, 593
Van91I CCANNNNNTGG 2 cut(s) 440, 1287
VpaK11BI GGWCC 1 cut(s) 858
XapI RAATTY 1 cut(s) 1302
XceI RCATGY 2 cut(s) 74, 1239
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 828
XspI CTAG 2 cut(s) 362, 689
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.