FvH4_7g07070

protein polyubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013108
Physical Location & Seq
Reverse (-)
7050315 .. 7052120
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07070.t1

Sequence Viewer

Length: 270 bp
ATGAAGGGTTTGGTATGGGCAACGGCAGAGGACTTAGCGAGAAACAGAGGACGTGTTCTTTCCCTGTATCGCCAGATACTGAGAAGCATCAATTCTCCGAATCTGCCGCTGAACTTGGCAGCAAGACTCGCCAAGAAAGCAGAGGTGCGCGCCATCTTCATGTTGGCTTCCGAGGAGAGGTCACTGCATAACATTGAGGACCTCATTGATGCTGCCGACTACTCTCTCTCCCTCTTGAGGAAAGGAGAGATACCCAAGTATATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.09

Weight (kDa)

9.77

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LYRM_2 PF23655 11 - 80 5.4e-42 LYR motif containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 177, 237
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 1 cut(s) 266
AjiI CACGTC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 119, 212
AspLEI GCGC 2 cut(s) 150, 152
AspS9I GGNCC 1 cut(s) 199
AvaII GGWCC 1 cut(s) 199
BaeI ACNNNNGTAYC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 131, 199
BccI CCATC 1 cut(s) 161
BceAI ACGGC 1 cut(s) 39
BisI GCNGC 3 cut(s) 107, 120, 213
BlsI GCNGC 3 cut(s) 108, 121, 214
Bme18I GGWCC 1 cut(s) 199
BmgBI CACGTC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 199
BmsI GCATC 2 cut(s) 96, 199
BpuEI CTTGAG 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 237
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 177, 237
BseMII CTCAG 1 cut(s) 71
BsePI GCGCGC 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 131, 199
Bsh1236I CGCG 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 177, 237
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 72
BspFNI CGCG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 171
BssHII GCGCGC 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 34, 80
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 2 cut(s) 150, 152
BstMWI GCNNNNNNNGC 2 cut(s) 128, 137
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 131, 199
BtrI CACGTC 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 79
CfoI GCGC 2 cut(s) 150, 152
Cfr13I GGNCC 1 cut(s) 199
CviAII CATG 1 cut(s) 160
CviJI RGCY 1 cut(s) 167
CviKI_1 RGCY 1 cut(s) 167
DdeI CTNAG 2 cut(s) 34, 80
Eco47I GGWCC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 199
FaeI CATG 1 cut(s) 163
FaiI YATR 4 cut(s) 16, 161, 189, 261
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 107, 120, 213
Fsp4HI GCNGC 3 cut(s) 107, 120, 213
GlaI GCGC 2 cut(s) 149, 151
GluI GCNGC 3 cut(s) 107, 120, 213
HhaI GCGC 2 cut(s) 150, 152
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 2 cut(s) 148, 150
HinP1I GCGC 2 cut(s) 148, 150
HinfI GANTC 2 cut(s) 100, 126
Hpy188I TCNGA 2 cut(s) 99, 172
Hpy188III TCNNGA 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 137
HpyF3I CTNAG 2 cut(s) 34, 80
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 2 cut(s) 148, 150
LpnPI CCDG 2 cut(s) 77, 86
Lsp1109I GCAGC 2 cut(s) 131, 199
LweI GCATC 2 cut(s) 96, 199
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 180
MboII GAAGA 1 cut(s) 148
MluCI AATT 1 cut(s) 91
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 9 cut(s) 22, 41, 136, 166, 171, 190, 212, 231, 242
MslI CAYNNNNRTG 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 109
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 128, 137
NlaIII CATG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 180
PauI GCGCGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 3 cut(s) 108, 121, 214
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 79
PteI GCGCGC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 158
SatI GCNGC 3 cut(s) 107, 120, 213
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 1 cut(s) 120
SetI ASST 4 cut(s) 55, 147, 182, 204
SfaNI GCATC 2 cut(s) 96, 199
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 1 cut(s) 91
SsiI CCGC 1 cut(s) 107
TaiI ACGT 1 cut(s) 55
TasI AATT 1 cut(s) 91
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 1 cut(s) 100
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 2 cut(s) 119, 212
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 2 cut(s) 17, 148
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.