Rh1AG150900

protein polyubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0013108
Physical Location & Seq
Reverse (-)
28327953 .. 28329232
1280 bp
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UTR
Exon/CDS
Intron
Rh1AG150900.1

Sequence Viewer

Length: 420 bp
ATGAGTGGGGGTTTGATATGGGCAACGGCAGAGGACTTGGCGAGAAACAGAGGACGCGTTCTTTTTCTGTATCGCCAGATATTGAGAAGCATCAATTCTCCGAATCTGCCTCTGAATTTGGCAGCAAGACTTGCCAAGAAAGCAGAGGCGCGCGCAATCTTCATGTTGGCTTCCGAGGAGAGGTCCCTGCACAACATTGAAGACCTCGTTGATGCTGCCAACTACTCTCTATCCCTCTTGAGGAAAGGAGAGATACCCAATGTAATACGGATGCACAAAGATGAAAAGAACTTGCAAAAATATAAATTCCCAACTGTTGTATCAAAAAATCCTGTCCCATTCACGTGGACCAAAAGTCTAGCATATCCTTTGTTAGATAATAGGGAAGAAGATCAATCTCAGAGGAAGGAGACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.96

Weight (kDa)

9.81

Isoelectric Point (pI)

62.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LYRM_2 PF23655 12 - 81 2.3e-39 LYR motif containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 57, 151, 153
AcsI RAATTY 2 cut(s) 115, 305
AcvI CACGTG 1 cut(s) 345
AfiI CCNNNNNNNGG 2 cut(s) 180, 240
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 1 cut(s) 200
AhdI GACNNNNNGTC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 122, 215
ApoI RAATTY 2 cut(s) 115, 305
AspLEI GCGC 3 cut(s) 151, 153, 155
AspS9I GGNCC 2 cut(s) 183, 348
AvaII GGWCC 2 cut(s) 183, 348
BaeI ACNNNNGTAYC 2 cut(s) 303, 336
BbrPI CACGTG 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 134, 202
BceAI ACGGC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 1 cut(s) 359
BisI GCNGC 2 cut(s) 123, 216
BlsI GCNGC 2 cut(s) 124, 217
Bme18I GGWCC 2 cut(s) 183, 348
BmeRI GACNNNNNGTC 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 183, 348
BmiI GGNNCC 1 cut(s) 185
BmsI GCATC 3 cut(s) 99, 202, 261
BpiI GAAGAC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 240
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 180, 240
BseMII CTCAG 1 cut(s) 413
BsePI GCGCGC 2 cut(s) 149, 151
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 134, 202
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 3 cut(s) 57, 151, 153
BslFI GGGAC 2 cut(s) 169, 320
BslI CCNNNNNNNGG 2 cut(s) 180, 240
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 2 cut(s) 169, 320
Bsp143I GATC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 412
BspFNI CGCG 3 cut(s) 57, 151, 153
BspLI GGNNCC 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 174
BssHII GCGCGC 2 cut(s) 149, 151
BssMI GATC 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 316
BstAPI GCANNNNNTGC 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 151, 153
BstDEI CTNAG 1 cut(s) 399
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 3 cut(s) 57, 151, 153
BstHHI GCGC 3 cut(s) 151, 153, 155
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 2 cut(s) 131, 140
BstUI CGCG 3 cut(s) 57, 151, 153
BstV1I GCAGC 2 cut(s) 134, 202
BstV2I GAAGAC 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 276
Cac8I GCNNGC 2 cut(s) 151, 153
CfoI GCGC 3 cut(s) 151, 153, 155
Cfr13I GGNCC 2 cut(s) 183, 348
CseI GACGC 1 cut(s) 63
CviAII CATG 1 cut(s) 163
CviJI RGCY 1 cut(s) 170
CviKI_1 RGCY 1 cut(s) 170
DdeI CTNAG 1 cut(s) 399
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
DriI GACNNNNNGTC 1 cut(s) 354
Eam1105I GACNNNNNGTC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 183, 348
Eco72I CACGTG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 183
FaeI CATG 1 cut(s) 166
FaiI YATR 4 cut(s) 19, 164, 303, 364
FaqI GGGAC 2 cut(s) 169, 320
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 123, 216
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 2 cut(s) 123, 216
FspBI CTAG 1 cut(s) 359
GlaI GCGC 3 cut(s) 150, 152, 154
GluI GCNGC 2 cut(s) 123, 216
HgaI GACGC 1 cut(s) 63
HhaI GCGC 3 cut(s) 151, 153, 155
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 3 cut(s) 149, 151, 153
HinP1I GCGC 3 cut(s) 149, 151, 153
HinfI GANTC 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 4 cut(s) 102, 114, 175, 402
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 348
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 3 cut(s) 190, 274, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 140
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 344
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 3 cut(s) 149, 151, 153
Kzo9I GATC 1 cut(s) 391
LpnPI CCDG 3 cut(s) 89, 200, 345
Lsp1109I GCAGC 2 cut(s) 134, 202
LweI GCATC 3 cut(s) 99, 202, 261
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 344
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 4 cut(s) 151, 212, 398, 401
MluCI AATT 3 cut(s) 94, 115, 305
MluI ACGCGT 1 cut(s) 55
MslI CAYNNNNRTG 2 cut(s) 279, 343
MvnI CGCG 3 cut(s) 57, 151, 153
MwoI GCNNNNNNNGC 2 cut(s) 131, 140
NdeII GATC 1 cut(s) 391
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 185
PauI GCGCGC 2 cut(s) 149, 151
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 124, 217
PmaCI CACGTG 1 cut(s) 345
PmlI CACGTG 1 cut(s) 345
Ppu21I YACGTR 1 cut(s) 345
PpuMI RGGWCCY 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 183
PspCI CACGTG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 2 cut(s) 183, 348
PspPPI RGGWCCY 1 cut(s) 183
PteI GCGCGC 2 cut(s) 149, 151
RseI CAYNNNNRTG 2 cut(s) 279, 343
SatI GCNGC 2 cut(s) 123, 216
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 2 cut(s) 183, 348
SetI ASST 3 cut(s) 185, 207, 347
SfaNI GCATC 3 cut(s) 99, 202, 261
SinI GGWCC 2 cut(s) 183, 348
SmiMI CAYNNNNRTG 2 cut(s) 279, 343
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 3 cut(s) 94, 115, 305
SspMI CTAG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 1 cut(s) 347
TasI AATT 3 cut(s) 94, 115, 305
TfiI GAWTC 1 cut(s) 103
TseI GCWGC 2 cut(s) 122, 215
TspDTI ATGAA 2 cut(s) 151, 297
TspGWI ACGGA 1 cut(s) 283
VpaK11BI GGWCC 2 cut(s) 183, 348
XapI RAATTY 2 cut(s) 115, 305
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.