Prupe.2G097300_v2.0.a1

protein polyubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013108
Physical Location & Seq
Reverse (-)
15238432 .. 15240793
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G097300.1

Sequence Viewer

Length: 273 bp
ATGGGAAAGGGTGTGATATGGGCAACGGCAGAGGACTTGGCAAGAAACAGAGGACGCGTTCTCTCACTGTATCGCCAAATTCTGAGAAGCCTCAACTCACCGGATTTGCCTCTGAATTTGGCAGCAAGGCTGGCCAAGAAAGCTGAGGCGCGCGCAATCTTCGTGGTGGCGTCTGAGGAGAGGTCCCTGCACAACATTGATGACCTCATTGATGCTGCTCACTACTCTCTTTCCCTCTTAAGGAAAGGAGAAATACCCAAGTACATCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.08

Weight (kDa)

9.77

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 57, 151, 153
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 2 cut(s) 78, 115
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 240
AflII CTTAAG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 55
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 122, 215
ApoI RAATTY 2 cut(s) 78, 115
AspLEI GCGC 3 cut(s) 151, 153, 155
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 90
AvaII GGWCC 1 cut(s) 183
BalI TGGCCA 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 134, 202
BceAI ACGGC 1 cut(s) 42
BfrI CTTAAG 1 cut(s) 238
BisI GCNGC 2 cut(s) 123, 216
BlsI GCNGC 2 cut(s) 124, 217
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 185
BmsI GCATC 1 cut(s) 202
Bpu10I CCTNAGC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 3 cut(s) 74, 135, 165
BsePI GCGCGC 2 cut(s) 149, 151
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 134, 202
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 3 cut(s) 57, 151, 153
BshFI GGCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 134
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 3 cut(s) 75, 136, 166
BspFNI CGCG 3 cut(s) 57, 151, 153
BspLI GGNNCC 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 238
BssHII GCGCGC 2 cut(s) 149, 151
BssNI GRCGYC 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 170
BstAFI CTTAAG 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 132, 151, 153
BstDEI CTNAG 3 cut(s) 83, 144, 174
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 3 cut(s) 57, 151, 153
BstHHI GCGC 3 cut(s) 151, 153, 155
BstMWI GCNNNNNNNGC 2 cut(s) 131, 140
BstUI CGCG 3 cut(s) 57, 151, 153
BstV1I GCAGC 2 cut(s) 134, 202
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 132, 151, 153
CfoI GCGC 3 cut(s) 151, 153, 155
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 2 cut(s) 63, 159
Csp6I GTAC 1 cut(s) 262
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviJI RGCY 4 cut(s) 90, 130, 134, 143
CviKI_1 RGCY 4 cut(s) 90, 130, 134, 143
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 3 cut(s) 83, 144, 174
EaeI YGGCCR 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 183
FaiI YATR 1 cut(s) 19
FaqI GGGAC 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 123, 216
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 123, 216
GlaI GCGC 3 cut(s) 150, 152, 154
GluI GCNGC 2 cut(s) 123, 216
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 101
HgaI GACGC 2 cut(s) 63, 159
HhaI GCGC 3 cut(s) 151, 153, 155
Hin1I GRCGYC 1 cut(s) 170
Hin6I GCGC 3 cut(s) 149, 151, 153
HinP1I GCGC 3 cut(s) 149, 151, 153
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 90
Hpy188I TCNGA 3 cut(s) 84, 114, 175
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 140
HpyF3I CTNAG 3 cut(s) 83, 144, 174
Hsp92I GRCGYC 1 cut(s) 170
HspAI GCGC 3 cut(s) 149, 151, 153
LpnPI CCDG 3 cut(s) 114, 116, 200
Lsp1109I GCAGC 2 cut(s) 134, 202
LweI GCATC 1 cut(s) 202
MboII GAAGA 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 2 cut(s) 78, 115
MluI ACGCGT 1 cut(s) 55
MluNI TGGCCA 1 cut(s) 134
MnlI CCTC 9 cut(s) 25, 44, 101, 120, 139, 169, 174, 215, 245
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 239
Msp20I TGGCCA 1 cut(s) 134
MspCI CTTAAG 1 cut(s) 238
MspI CCGG 1 cut(s) 101
MvnI CGCG 3 cut(s) 57, 151, 153
MwoI GCNNNNNNNGC 2 cut(s) 131, 140
NlaIV GGNNCC 1 cut(s) 185
PauI GCGCGC 2 cut(s) 149, 151
PkrI GCNGC 2 cut(s) 124, 217
PpuMI RGGWCCY 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 183
PspPPI RGGWCCY 1 cut(s) 183
PteI GCGCGC 2 cut(s) 149, 151
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 2 cut(s) 123, 216
Sau96I GGNCC 1 cut(s) 183
SetI ASST 3 cut(s) 145, 185, 207
SfaNI GCATC 1 cut(s) 202
SinI GGWCC 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 2 cut(s) 78, 115
TaaI ACNGT 1 cut(s) 69
TasI AATT 2 cut(s) 78, 115
TatI WGTACW 1 cut(s) 261
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 72
TseI GCWGC 2 cut(s) 122, 215
TspRI CASTG 1 cut(s) 72
Vha464I CTTAAG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 2 cut(s) 78, 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.